data_8PT1 # _model_server_result.job_id O2DZcXX42AraMFAbhFbwtg _model_server_result.datetime_utc '2024-11-18 12:45:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pt1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8PT1 # _exptl.entry_id 8PT1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 304.338 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{O}1-methyl ~{O}3-(phenylmethyl) (1~{S},3~{R})-1-methyl-4-oxidanylidene-cyclohexane-1,3-dicarboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PT1 _cell.length_a 41.58 _cell.length_b 77.15 _cell.length_c 123.68 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PT1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 165 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 161 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id C _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id E2A _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id E2A _struct_conn.ptnr2_auth_seq_id 402 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.78 _struct_conn.pdbx_value_order ? # _chem_comp.formula ? _chem_comp.formula_weight 304.338 _chem_comp.id E2A _chem_comp.mon_nstd_flag . _chem_comp.name '~{O}1-methyl ~{O}3-(phenylmethyl) (1~{S},3~{R})-1-methyl-4-oxidanylidene-cyclohexane-1,3-dicarboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 O E2A sing 133 n n O1 C14 E2A doub 134 n n O C14 E2A sing 135 n n C14 C4 E2A sing 136 n n C5 C4 E2A sing 137 n n C5 C6 E2A sing 138 n n C2 C3 E2A sing 139 n n C2 C16 E2A sing 140 n n C2 C1 E2A sing 141 n n C4 C3 E2A sing 142 n n C4 C7 E2A sing 143 n n O2 C16 E2A doub 144 n n C16 O3 E2A sing 145 n n C1 O4 E2A doub 146 n n C1 C6 E2A sing 147 n n O3 C17 E2A sing 148 n n C17 C18 E2A sing 149 n n C23 C18 E2A doub 150 n y C23 C22 E2A sing 151 n y C18 C19 E2A sing 152 n y C22 C21 E2A doub 153 n y C19 C20 E2A doub 154 n y C21 C20 E2A sing 155 n y C3 H1 E2A sing 156 n n C3 H2 E2A sing 157 n n C7 H3 E2A sing 158 n n C7 H4 E2A sing 159 n n C7 H5 E2A sing 160 n n C15 H6 E2A sing 161 n n C15 H7 E2A sing 162 n n C15 H8 E2A sing 163 n n C5 H9 E2A sing 164 n n C5 H10 E2A sing 165 n n C6 H11 E2A sing 166 n n C6 H12 E2A sing 167 n n C2 H13 E2A sing 168 n n C17 H14 E2A sing 169 n n C17 H15 E2A sing 170 n n C23 H16 E2A sing 171 n n C22 H17 E2A sing 172 n n C21 H18 E2A sing 173 n n C20 H19 E2A sing 174 n n C19 H20 E2A sing 175 n n # _atom_sites.entry_id 8PT1 _atom_sites.fract_transf_matrix[1][1] 0.02405 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012962 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008085 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 1359 ANP ANP . C 3 E2A A 1 402 1360 E2A R76 . D 4 HOH A 1 501 180 HOH HOH . D 4 HOH A 2 502 78 HOH HOH . D 4 HOH A 3 503 149 HOH HOH . D 4 HOH A 4 504 71 HOH HOH . D 4 HOH A 5 505 150 HOH HOH . D 4 HOH A 6 506 138 HOH HOH . D 4 HOH A 7 507 126 HOH HOH . D 4 HOH A 8 508 174 HOH HOH . D 4 HOH A 9 509 77 HOH HOH . D 4 HOH A 10 510 25 HOH HOH . D 4 HOH A 11 511 26 HOH HOH . D 4 HOH A 12 512 82 HOH HOH . D 4 HOH A 13 513 156 HOH HOH . D 4 HOH A 14 514 88 HOH HOH . D 4 HOH A 15 515 142 HOH HOH . D 4 HOH A 16 516 194 HOH HOH . D 4 HOH A 17 517 76 HOH HOH . D 4 HOH A 18 518 94 HOH HOH . D 4 HOH A 19 519 95 HOH HOH . D 4 HOH A 20 520 154 HOH HOH . D 4 HOH A 21 521 55 HOH HOH . D 4 HOH A 22 522 165 HOH HOH . D 4 HOH A 23 523 61 HOH HOH . D 4 HOH A 24 524 39 HOH HOH . D 4 HOH A 25 525 37 HOH HOH . D 4 HOH A 26 526 49 HOH HOH . D 4 HOH A 27 527 3 HOH HOH . D 4 HOH A 28 528 166 HOH HOH . D 4 HOH A 29 529 146 HOH HOH . D 4 HOH A 30 530 109 HOH HOH . D 4 HOH A 31 531 190 HOH HOH . D 4 HOH A 32 532 158 HOH HOH . D 4 HOH A 33 533 13 HOH HOH . D 4 HOH A 34 534 16 HOH HOH . D 4 HOH A 35 535 47 HOH HOH . D 4 HOH A 36 536 80 HOH HOH . D 4 HOH A 37 537 22 HOH HOH . D 4 HOH A 38 538 171 HOH HOH . D 4 HOH A 39 539 167 HOH HOH . D 4 HOH A 40 540 5 HOH HOH . D 4 HOH A 41 541 60 HOH HOH . D 4 HOH A 42 542 52 HOH HOH . D 4 HOH A 43 543 48 HOH HOH . D 4 HOH A 44 544 203 HOH HOH . D 4 HOH A 45 545 62 HOH HOH . D 4 HOH A 46 546 32 HOH HOH . D 4 HOH A 47 547 143 HOH HOH . D 4 HOH A 48 548 107 HOH HOH . D 4 HOH A 49 549 173 HOH HOH . D 4 HOH A 50 550 169 HOH HOH . D 4 HOH A 51 551 15 HOH HOH . D 4 HOH A 52 552 92 HOH HOH . D 4 HOH A 53 553 72 HOH HOH . D 4 HOH A 54 554 181 HOH HOH . D 4 HOH A 55 555 1 HOH HOH . D 4 HOH A 56 556 10 HOH HOH . D 4 HOH A 57 557 117 HOH HOH . D 4 HOH A 58 558 75 HOH HOH . D 4 HOH A 59 559 91 HOH HOH . D 4 HOH A 60 560 155 HOH HOH . D 4 HOH A 61 561 63 HOH HOH . D 4 HOH A 62 562 56 HOH HOH . D 4 HOH A 63 563 116 HOH HOH . D 4 HOH A 64 564 182 HOH HOH . D 4 HOH A 65 565 31 HOH HOH . D 4 HOH A 66 566 121 HOH HOH . D 4 HOH A 67 567 70 HOH HOH . D 4 HOH A 68 568 29 HOH HOH . D 4 HOH A 69 569 123 HOH HOH . D 4 HOH A 70 570 118 HOH HOH . D 4 HOH A 71 571 20 HOH HOH . D 4 HOH A 72 572 87 HOH HOH . D 4 HOH A 73 573 196 HOH HOH . D 4 HOH A 74 574 136 HOH HOH . D 4 HOH A 75 575 43 HOH HOH . D 4 HOH A 76 576 212 HOH HOH . D 4 HOH A 77 577 57 HOH HOH . D 4 HOH A 78 578 40 HOH HOH . D 4 HOH A 79 579 11 HOH HOH . D 4 HOH A 80 580 104 HOH HOH . D 4 HOH A 81 581 59 HOH HOH . D 4 HOH A 82 582 85 HOH HOH . D 4 HOH A 83 583 128 HOH HOH . D 4 HOH A 84 584 9 HOH HOH . D 4 HOH A 85 585 152 HOH HOH . D 4 HOH A 86 586 50 HOH HOH . D 4 HOH A 87 587 23 HOH HOH . D 4 HOH A 88 588 2 HOH HOH . D 4 HOH A 89 589 84 HOH HOH . D 4 HOH A 90 590 8 HOH HOH . D 4 HOH A 91 591 125 HOH HOH . D 4 HOH A 92 592 215 HOH HOH . D 4 HOH A 93 593 24 HOH HOH . D 4 HOH A 94 594 14 HOH HOH . D 4 HOH A 95 595 68 HOH HOH . D 4 HOH A 96 596 124 HOH HOH . D 4 HOH A 97 597 6 HOH HOH . D 4 HOH A 98 598 12 HOH HOH . D 4 HOH A 99 599 97 HOH HOH . D 4 HOH A 100 600 17 HOH HOH . D 4 HOH A 101 601 67 HOH HOH . D 4 HOH A 102 602 28 HOH HOH . D 4 HOH A 103 603 159 HOH HOH . D 4 HOH A 104 604 160 HOH HOH . D 4 HOH A 105 605 89 HOH HOH . D 4 HOH A 106 606 162 HOH HOH . D 4 HOH A 107 607 131 HOH HOH . D 4 HOH A 108 608 192 HOH HOH . D 4 HOH A 109 609 151 HOH HOH . D 4 HOH A 110 610 4 HOH HOH . D 4 HOH A 111 611 187 HOH HOH . D 4 HOH A 112 612 65 HOH HOH . D 4 HOH A 113 613 21 HOH HOH . D 4 HOH A 114 614 51 HOH HOH . D 4 HOH A 115 615 19 HOH HOH . D 4 HOH A 116 616 69 HOH HOH . D 4 HOH A 117 617 105 HOH HOH . D 4 HOH A 118 618 7 HOH HOH . D 4 HOH A 119 619 83 HOH HOH . D 4 HOH A 120 620 106 HOH HOH . D 4 HOH A 121 621 170 HOH HOH . D 4 HOH A 122 622 188 HOH HOH . D 4 HOH A 123 623 100 HOH HOH . D 4 HOH A 124 624 18 HOH HOH . D 4 HOH A 125 625 99 HOH HOH . D 4 HOH A 126 626 74 HOH HOH . D 4 HOH A 127 627 44 HOH HOH . D 4 HOH A 128 628 30 HOH HOH . D 4 HOH A 129 629 35 HOH HOH . D 4 HOH A 130 630 46 HOH HOH . D 4 HOH A 131 631 36 HOH HOH . D 4 HOH A 132 632 205 HOH HOH . D 4 HOH A 133 633 179 HOH HOH . D 4 HOH A 134 634 101 HOH HOH . D 4 HOH A 135 635 127 HOH HOH . D 4 HOH A 136 636 27 HOH HOH . D 4 HOH A 137 637 38 HOH HOH . D 4 HOH A 138 638 42 HOH HOH . D 4 HOH A 139 639 172 HOH HOH . D 4 HOH A 140 640 58 HOH HOH . D 4 HOH A 141 641 53 HOH HOH . D 4 HOH A 142 642 132 HOH HOH . D 4 HOH A 143 643 145 HOH HOH . D 4 HOH A 144 644 33 HOH HOH . D 4 HOH A 145 645 41 HOH HOH . D 4 HOH A 146 646 81 HOH HOH . D 4 HOH A 147 647 34 HOH HOH . D 4 HOH A 148 648 45 HOH HOH . D 4 HOH A 149 649 66 HOH HOH . D 4 HOH A 150 650 129 HOH HOH . D 4 HOH A 151 651 86 HOH HOH . D 4 HOH A 152 652 122 HOH HOH . D 4 HOH A 153 653 141 HOH HOH . D 4 HOH A 154 654 191 HOH HOH . D 4 HOH A 155 655 199 HOH HOH . D 4 HOH A 156 656 137 HOH HOH . D 4 HOH A 157 657 168 HOH HOH . D 4 HOH A 158 658 79 HOH HOH . D 4 HOH A 159 659 177 HOH HOH . D 4 HOH A 160 660 183 HOH HOH . D 4 HOH A 161 661 111 HOH HOH . D 4 HOH A 162 662 186 HOH HOH . D 4 HOH A 163 663 110 HOH HOH . D 4 HOH A 164 664 113 HOH HOH . D 4 HOH A 165 665 73 HOH HOH . D 4 HOH A 166 666 139 HOH HOH . D 4 HOH A 167 667 176 HOH HOH . D 4 HOH A 168 668 175 HOH HOH . D 4 HOH A 169 669 195 HOH HOH . D 4 HOH A 170 670 213 HOH HOH . D 4 HOH A 171 671 108 HOH HOH . D 4 HOH A 172 672 207 HOH HOH . D 4 HOH A 173 673 147 HOH HOH . D 4 HOH A 174 674 204 HOH HOH . D 4 HOH A 175 675 161 HOH HOH . D 4 HOH A 176 676 208 HOH HOH . D 4 HOH A 177 677 114 HOH HOH . D 4 HOH A 178 678 93 HOH HOH . D 4 HOH A 179 679 144 HOH HOH . D 4 HOH A 180 680 178 HOH HOH . D 4 HOH A 181 681 163 HOH HOH . D 4 HOH A 182 682 184 HOH HOH . D 4 HOH A 183 683 64 HOH HOH . D 4 HOH A 184 684 98 HOH HOH . D 4 HOH A 185 685 133 HOH HOH . D 4 HOH A 186 686 209 HOH HOH . D 4 HOH A 187 687 153 HOH HOH . D 4 HOH A 188 688 193 HOH HOH . D 4 HOH A 189 689 200 HOH HOH . D 4 HOH A 190 690 96 HOH HOH . D 4 HOH A 191 691 164 HOH HOH . D 4 HOH A 192 692 103 HOH HOH . D 4 HOH A 193 693 148 HOH HOH . D 4 HOH A 194 694 120 HOH HOH . D 4 HOH A 195 695 201 HOH HOH . D 4 HOH A 196 696 140 HOH HOH . D 4 HOH A 197 697 202 HOH HOH . D 4 HOH A 198 698 189 HOH HOH . D 4 HOH A 199 699 134 HOH HOH . D 4 HOH A 200 700 211 HOH HOH . D 4 HOH A 201 701 135 HOH HOH . D 4 HOH A 202 702 54 HOH HOH . D 4 HOH A 203 703 206 HOH HOH . D 4 HOH A 204 704 115 HOH HOH . D 4 HOH A 205 705 112 HOH HOH . D 4 HOH A 206 706 198 HOH HOH . D 4 HOH A 207 707 119 HOH HOH . D 4 HOH A 208 708 185 HOH HOH . D 4 HOH A 209 709 90 HOH HOH . D 4 HOH A 210 710 130 HOH HOH . D 4 HOH A 211 711 102 HOH HOH . D 4 HOH A 212 712 157 HOH HOH . D 4 HOH A 213 713 197 HOH HOH . D 4 HOH A 214 714 216 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C3 E2A . . . C 3 -23.132 -32.489 20.659 1 83.49 ? C3 E2A 402 A 1 HETATM 2 C C4 E2A . . . C 3 -24.108 -31.289 20.501 1 93.41 ? C4 E2A 402 A 1 HETATM 3 C C7 E2A . . . C 3 -24.151 -30.41 21.726 1 93.29 ? C7 E2A 402 A 1 HETATM 4 C C14 E2A . . . C 3 -23.918 -30.562 19.218 1 97.01 ? C14 E2A 402 A 1 HETATM 5 C C15 E2A . . . C 3 -24.205 -28.457 18.053 1 92.5 ? C15 E2A 402 A 1 HETATM 6 C C5 E2A . . . C 3 -25.568 -31.601 20.347 1 95.72 ? C5 E2A 402 A 1 HETATM 7 C C6 E2A . . . C 3 -25.915 -32.435 21.531 1 99.21 ? C6 E2A 402 A 1 HETATM 8 C C1 E2A . . . C 3 -25.364 -33.725 21.047 1 99.94 ? C1 E2A 402 A 1 HETATM 9 C C2 E2A . . . C 3 -23.983 -33.783 20.46 1 102.22 ? C2 E2A 402 A 1 HETATM 10 C C16 E2A . . . C 3 -23.408 -35.101 20.902 1 108.98 ? C16 E2A 402 A 1 HETATM 11 C C17 E2A . . . C 3 -21.797 -36.454 22.134 1 113.75 ? C17 E2A 402 A 1 HETATM 12 C C18 E2A . . . C 3 -20.821 -36.17 23.227 1 113.77 ? C18 E2A 402 A 1 HETATM 13 C C23 E2A . . . C 3 -19.965 -35.111 23.1 1 113.18 ? C23 E2A 402 A 1 HETATM 14 C C22 E2A . . . C 3 -19.072 -34.898 24.122 1 114.85 ? C22 E2A 402 A 1 HETATM 15 C C21 E2A . . . C 3 -19.037 -35.712 25.231 1 113.85 ? C21 E2A 402 A 1 HETATM 16 C C20 E2A . . . C 3 -19.904 -36.769 25.342 1 113.59 ? C20 E2A 402 A 1 HETATM 17 C C19 E2A . . . C 3 -20.801 -36.994 24.331 1 113.84 ? C19 E2A 402 A 1 HETATM 18 O O E2A . . . C 3 -23.63 -29.159 19.141 1 93.43 ? O E2A 402 A 1 HETATM 19 O O1 E2A . . . C 3 -24.102 -31.168 18.198 1 100.09 ? O1 E2A 402 A 1 HETATM 20 O O4 E2A . . . C 3 -26.111 -34.673 21.103 1 99.24 ? O4 E2A 402 A 1 HETATM 21 O O2 E2A . . . C 3 -24.064 -36.128 20.843 1 111.61 ? O2 E2A 402 A 1 HETATM 22 O O3 E2A . . . C 3 -22.084 -35.233 21.469 1 113.41 ? O3 E2A 402 A 1 # _model_server_stats.io_time_ms 76 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #