data_8PT3 # _model_server_result.job_id A7TslfCTkzgVW00FAD_FKw _model_server_result.datetime_utc '2024-11-28 20:12:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8PT3 # _exptl.entry_id 8PT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 294.343 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{O}3-~{tert}-butyl ~{O}1-methyl (1~{S},3~{S},5~{R})-6-methylidene-4-oxidanylidene-bicyclo[3.2.1]octane-1,3-dicarboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PT3 _cell.length_a 41.937 _cell.length_b 78.471 _cell.length_c 122.744 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 129 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 125 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id D7O _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id D7O _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.55 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C16 H22 O5' _chem_comp.formula_weight 294.343 _chem_comp.id D7O _chem_comp.mon_nstd_flag . _chem_comp.name '~{O}3-~{tert}-butyl ~{O}1-methyl (1~{S},3~{S},5~{R})-6-methylidene-4-oxidanylidene-bicyclo[3.2.1]octane-1,3-dicarboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C18 C17 D7O sing 133 n n C9 C8 D7O doub 134 n n O2 C16 D7O doub 135 n n O4 C1 D7O doub 136 n n C17 O3 D7O sing 137 n n C17 C19 D7O sing 138 n n C17 C20 D7O sing 139 n n C16 C2 D7O sing 140 n n C16 O3 D7O sing 141 n n C8 C7 D7O sing 142 n n C8 C6 D7O sing 143 n n C2 C1 D7O sing 144 n n C2 C3 D7O sing 145 n n C1 C6 D7O sing 146 n n C7 C4 D7O sing 147 n n C6 C5 D7O sing 148 n n C3 C4 D7O sing 149 n n C4 C5 D7O sing 150 n n C4 C14 D7O sing 151 n n O C14 D7O sing 152 n n O C15 D7O sing 153 n n C14 O1 D7O doub 154 n n C2 H1 D7O sing 155 n n C3 H2 D7O sing 156 n n C3 H3 D7O sing 157 n n C15 H4 D7O sing 158 n n C15 H5 D7O sing 159 n n C15 H6 D7O sing 160 n n C19 H7 D7O sing 161 n n C19 H8 D7O sing 162 n n C19 H9 D7O sing 163 n n C20 H10 D7O sing 164 n n C20 H11 D7O sing 165 n n C20 H12 D7O sing 166 n n C18 H13 D7O sing 167 n n C18 H14 D7O sing 168 n n C18 H15 D7O sing 169 n n C7 H16 D7O sing 170 n n C7 H17 D7O sing 171 n n C5 H18 D7O sing 172 n n C5 H19 D7O sing 173 n n C6 H20 D7O sing 174 n n C9 H21 D7O sing 175 n n C9 H22 D7O sing 176 n n # _atom_sites.entry_id 8PT3 _atom_sites.fract_transf_matrix[1][1] 0.023845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D7O A 1 401 402 D7O R77 . C 3 GOL A 1 402 403 GOL GOL . D 3 GOL A 1 403 404 GOL GOL . E 3 GOL A 1 404 405 GOL GOL . F 4 ANP A 1 405 406 ANP ANP . G 5 HOH A 1 501 70 HOH HOH . G 5 HOH A 2 502 47 HOH HOH . G 5 HOH A 3 503 85 HOH HOH . G 5 HOH A 4 504 29 HOH HOH . G 5 HOH A 5 505 77 HOH HOH . G 5 HOH A 6 506 33 HOH HOH . G 5 HOH A 7 507 37 HOH HOH . G 5 HOH A 8 508 117 HOH HOH . G 5 HOH A 9 509 96 HOH HOH . G 5 HOH A 10 510 66 HOH HOH . G 5 HOH A 11 511 145 HOH HOH . G 5 HOH A 12 512 12 HOH HOH . G 5 HOH A 13 513 44 HOH HOH . G 5 HOH A 14 514 103 HOH HOH . G 5 HOH A 15 515 20 HOH HOH . G 5 HOH A 16 516 51 HOH HOH . G 5 HOH A 17 517 87 HOH HOH . G 5 HOH A 18 518 102 HOH HOH . G 5 HOH A 19 519 138 HOH HOH . G 5 HOH A 20 520 41 HOH HOH . G 5 HOH A 21 521 72 HOH HOH . G 5 HOH A 22 522 81 HOH HOH . G 5 HOH A 23 523 7 HOH HOH . G 5 HOH A 24 524 13 HOH HOH . G 5 HOH A 25 525 88 HOH HOH . G 5 HOH A 26 526 111 HOH HOH . G 5 HOH A 27 527 22 HOH HOH . G 5 HOH A 28 528 50 HOH HOH . G 5 HOH A 29 529 49 HOH HOH . G 5 HOH A 30 530 59 HOH HOH . G 5 HOH A 31 531 24 HOH HOH . G 5 HOH A 32 532 99 HOH HOH . G 5 HOH A 33 533 82 HOH HOH . G 5 HOH A 34 534 92 HOH HOH . G 5 HOH A 35 535 17 HOH HOH . G 5 HOH A 36 536 112 HOH HOH . G 5 HOH A 37 537 114 HOH HOH . G 5 HOH A 38 538 61 HOH HOH . G 5 HOH A 39 539 113 HOH HOH . G 5 HOH A 40 540 23 HOH HOH . G 5 HOH A 41 541 124 HOH HOH . G 5 HOH A 42 542 152 HOH HOH . G 5 HOH A 43 543 45 HOH HOH . G 5 HOH A 44 544 142 HOH HOH . G 5 HOH A 45 545 115 HOH HOH . G 5 HOH A 46 546 19 HOH HOH . G 5 HOH A 47 547 27 HOH HOH . G 5 HOH A 48 548 38 HOH HOH . G 5 HOH A 49 549 34 HOH HOH . G 5 HOH A 50 550 55 HOH HOH . G 5 HOH A 51 551 48 HOH HOH . G 5 HOH A 52 552 153 HOH HOH . G 5 HOH A 53 553 104 HOH HOH . G 5 HOH A 54 554 137 HOH HOH . G 5 HOH A 55 555 39 HOH HOH . G 5 HOH A 56 556 93 HOH HOH . G 5 HOH A 57 557 133 HOH HOH . G 5 HOH A 58 558 10 HOH HOH . G 5 HOH A 59 559 100 HOH HOH . G 5 HOH A 60 560 67 HOH HOH . G 5 HOH A 61 561 151 HOH HOH . G 5 HOH A 62 562 64 HOH HOH . G 5 HOH A 63 563 16 HOH HOH . G 5 HOH A 64 564 91 HOH HOH . G 5 HOH A 65 565 68 HOH HOH . G 5 HOH A 66 566 150 HOH HOH . G 5 HOH A 67 567 89 HOH HOH . G 5 HOH A 68 568 3 HOH HOH . G 5 HOH A 69 569 15 HOH HOH . G 5 HOH A 70 570 31 HOH HOH . G 5 HOH A 71 571 147 HOH HOH . G 5 HOH A 72 572 14 HOH HOH . G 5 HOH A 73 573 146 HOH HOH . G 5 HOH A 74 574 32 HOH HOH . G 5 HOH A 75 575 9 HOH HOH . G 5 HOH A 76 576 18 HOH HOH . G 5 HOH A 77 577 94 HOH HOH . G 5 HOH A 78 578 86 HOH HOH . G 5 HOH A 79 579 105 HOH HOH . G 5 HOH A 80 580 28 HOH HOH . G 5 HOH A 81 581 148 HOH HOH . G 5 HOH A 82 582 110 HOH HOH . G 5 HOH A 83 583 30 HOH HOH . G 5 HOH A 84 584 78 HOH HOH . G 5 HOH A 85 585 6 HOH HOH . G 5 HOH A 86 586 80 HOH HOH . G 5 HOH A 87 587 108 HOH HOH . G 5 HOH A 88 588 84 HOH HOH . G 5 HOH A 89 589 107 HOH HOH . G 5 HOH A 90 590 26 HOH HOH . G 5 HOH A 91 591 42 HOH HOH . G 5 HOH A 92 592 57 HOH HOH . G 5 HOH A 93 593 75 HOH HOH . G 5 HOH A 94 594 126 HOH HOH . G 5 HOH A 95 595 98 HOH HOH . G 5 HOH A 96 596 158 HOH HOH . G 5 HOH A 97 597 53 HOH HOH . G 5 HOH A 98 598 121 HOH HOH . G 5 HOH A 99 599 101 HOH HOH . G 5 HOH A 100 600 4 HOH HOH . G 5 HOH A 101 601 40 HOH HOH . G 5 HOH A 102 602 60 HOH HOH . G 5 HOH A 103 603 52 HOH HOH . G 5 HOH A 104 604 129 HOH HOH . G 5 HOH A 105 605 35 HOH HOH . G 5 HOH A 106 606 130 HOH HOH . G 5 HOH A 107 607 106 HOH HOH . G 5 HOH A 108 608 25 HOH HOH . G 5 HOH A 109 609 2 HOH HOH . G 5 HOH A 110 610 63 HOH HOH . G 5 HOH A 111 611 132 HOH HOH . G 5 HOH A 112 612 21 HOH HOH . G 5 HOH A 113 613 8 HOH HOH . G 5 HOH A 114 614 131 HOH HOH . G 5 HOH A 115 615 65 HOH HOH . G 5 HOH A 116 616 54 HOH HOH . G 5 HOH A 117 617 36 HOH HOH . G 5 HOH A 118 618 11 HOH HOH . G 5 HOH A 119 619 95 HOH HOH . G 5 HOH A 120 620 76 HOH HOH . G 5 HOH A 121 621 139 HOH HOH . G 5 HOH A 122 622 1 HOH HOH . G 5 HOH A 123 623 5 HOH HOH . G 5 HOH A 124 624 134 HOH HOH . G 5 HOH A 125 625 58 HOH HOH . G 5 HOH A 126 626 127 HOH HOH . G 5 HOH A 127 627 62 HOH HOH . G 5 HOH A 128 628 97 HOH HOH . G 5 HOH A 129 629 43 HOH HOH . G 5 HOH A 130 630 123 HOH HOH . G 5 HOH A 131 631 125 HOH HOH . G 5 HOH A 132 632 56 HOH HOH . G 5 HOH A 133 633 122 HOH HOH . G 5 HOH A 134 634 159 HOH HOH . G 5 HOH A 135 635 140 HOH HOH . G 5 HOH A 136 636 128 HOH HOH . G 5 HOH A 137 637 141 HOH HOH . G 5 HOH A 138 638 90 HOH HOH . G 5 HOH A 139 639 135 HOH HOH . G 5 HOH A 140 640 71 HOH HOH . G 5 HOH A 141 641 73 HOH HOH . G 5 HOH A 142 642 144 HOH HOH . G 5 HOH A 143 643 109 HOH HOH . G 5 HOH A 144 644 149 HOH HOH . G 5 HOH A 145 645 116 HOH HOH . G 5 HOH A 146 646 74 HOH HOH . G 5 HOH A 147 647 83 HOH HOH . G 5 HOH A 148 648 69 HOH HOH . G 5 HOH A 149 649 46 HOH HOH . G 5 HOH A 150 650 143 HOH HOH . G 5 HOH A 151 651 136 HOH HOH . G 5 HOH A 152 652 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D7O . . . B 2 -27.131 -35.805 21.685 1 56.29 ? C1 D7O 401 A 1 HETATM 2 C C2 D7O . . . B 2 -26.169 -34.618 21.622 1 51.87 ? C2 D7O 401 A 1 HETATM 3 C C3 D7O . . . B 2 -25.2 -34.545 22.825 1 49.23 ? C3 D7O 401 A 1 HETATM 4 C C8 D7O . . . B 2 -25.389 -37.428 21.49 1 55.58 ? C8 D7O 401 A 1 HETATM 5 C C14 D7O . . . B 2 -23.612 -35.795 24.319 1 47.93 ? C14 D7O 401 A 1 HETATM 6 C C15 D7O . . . B 2 -21.403 -35.053 24.768 1 42.75 ? C15 D7O 401 A 1 HETATM 7 C C16 D7O . . . B 2 -26.925 -33.318 21.406 1 56.97 ? C16 D7O 401 A 1 HETATM 8 C C17 D7O . . . B 2 -26.484 -30.891 21.284 1 51.9 ? C17 D7O 401 A 1 HETATM 9 C C19 D7O . . . B 2 -27.828 -30.483 21.837 1 57.49 ? C19 D7O 401 A 1 HETATM 10 C C20 D7O . . . B 2 -25.372 -30.04 21.843 1 41.94 ? C20 D7O 401 A 1 HETATM 11 C C18 D7O . . . B 2 -26.485 -30.899 19.773 1 51.37 ? C18 D7O 401 A 1 HETATM 12 C C7 D7O . . . B 2 -24.15 -36.775 22.07 1 53.16 ? C7 D7O 401 A 1 HETATM 13 C C5 D7O . . . B 2 -25.918 -36.745 23.722 1 50.5 ? C5 D7O 401 A 1 HETATM 14 C C6 D7O . . . B 2 -26.573 -37.045 22.365 1 49.58 ? C6 D7O 401 A 1 HETATM 15 C C9 D7O . . . B 2 -25.433 -38.18 20.406 1 50.21 ? C9 D7O 401 A 1 HETATM 16 C C4 D7O . . . B 2 -24.69 -35.935 23.254 1 49.65 ? C4 D7O 401 A 1 HETATM 17 O O4 D7O . . . B 2 -28.25 -35.784 21.219 1 55.16 ? O4 D7O 401 A 1 HETATM 18 O O3 D7O . . . B 2 -26.171 -32.269 21.732 1 45.37 ? O3 D7O 401 A 1 HETATM 19 O O2 D7O . . . B 2 -28.038 -33.253 20.945 1 53.86 ? O2 D7O 401 A 1 HETATM 20 O O D7O . . . B 2 -22.463 -35.332 23.82 1 47.69 ? O D7O 401 A 1 HETATM 21 O O1 D7O . . . B 2 -23.78 -36.053 25.483 1 52.05 ? O1 D7O 401 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #