data_8PT3 # _model_server_result.job_id zS9RBgkbKbWuwDheT18c0w _model_server_result.datetime_utc '2024-11-25 04:00:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8PT3 # _exptl.entry_id 8PT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PT3 _cell.length_a 41.937 _cell.length_b 78.471 _cell.length_c 122.744 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 129 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 125 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id D7O _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id D7O _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.55 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 223 n n C1 C2 GOL sing 224 n n C1 H11 GOL sing 225 n n C1 H12 GOL sing 226 n n O1 HO1 GOL sing 227 n n C2 O2 GOL sing 228 n n C2 C3 GOL sing 229 n n C2 H2 GOL sing 230 n n O2 HO2 GOL sing 231 n n C3 O3 GOL sing 232 n n C3 H31 GOL sing 233 n n C3 H32 GOL sing 234 n n O3 HO3 GOL sing 235 n n # _atom_sites.entry_id 8PT3 _atom_sites.fract_transf_matrix[1][1] 0.023845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D7O A 1 401 402 D7O R77 . C 3 GOL A 1 402 403 GOL GOL . D 3 GOL A 1 403 404 GOL GOL . E 3 GOL A 1 404 405 GOL GOL . F 4 ANP A 1 405 406 ANP ANP . G 5 HOH A 1 501 70 HOH HOH . G 5 HOH A 2 502 47 HOH HOH . G 5 HOH A 3 503 85 HOH HOH . G 5 HOH A 4 504 29 HOH HOH . G 5 HOH A 5 505 77 HOH HOH . G 5 HOH A 6 506 33 HOH HOH . G 5 HOH A 7 507 37 HOH HOH . G 5 HOH A 8 508 117 HOH HOH . G 5 HOH A 9 509 96 HOH HOH . G 5 HOH A 10 510 66 HOH HOH . G 5 HOH A 11 511 145 HOH HOH . G 5 HOH A 12 512 12 HOH HOH . G 5 HOH A 13 513 44 HOH HOH . G 5 HOH A 14 514 103 HOH HOH . G 5 HOH A 15 515 20 HOH HOH . G 5 HOH A 16 516 51 HOH HOH . G 5 HOH A 17 517 87 HOH HOH . G 5 HOH A 18 518 102 HOH HOH . G 5 HOH A 19 519 138 HOH HOH . G 5 HOH A 20 520 41 HOH HOH . G 5 HOH A 21 521 72 HOH HOH . G 5 HOH A 22 522 81 HOH HOH . G 5 HOH A 23 523 7 HOH HOH . G 5 HOH A 24 524 13 HOH HOH . G 5 HOH A 25 525 88 HOH HOH . G 5 HOH A 26 526 111 HOH HOH . G 5 HOH A 27 527 22 HOH HOH . G 5 HOH A 28 528 50 HOH HOH . G 5 HOH A 29 529 49 HOH HOH . G 5 HOH A 30 530 59 HOH HOH . G 5 HOH A 31 531 24 HOH HOH . G 5 HOH A 32 532 99 HOH HOH . G 5 HOH A 33 533 82 HOH HOH . G 5 HOH A 34 534 92 HOH HOH . G 5 HOH A 35 535 17 HOH HOH . G 5 HOH A 36 536 112 HOH HOH . G 5 HOH A 37 537 114 HOH HOH . G 5 HOH A 38 538 61 HOH HOH . G 5 HOH A 39 539 113 HOH HOH . G 5 HOH A 40 540 23 HOH HOH . G 5 HOH A 41 541 124 HOH HOH . G 5 HOH A 42 542 152 HOH HOH . G 5 HOH A 43 543 45 HOH HOH . G 5 HOH A 44 544 142 HOH HOH . G 5 HOH A 45 545 115 HOH HOH . G 5 HOH A 46 546 19 HOH HOH . G 5 HOH A 47 547 27 HOH HOH . G 5 HOH A 48 548 38 HOH HOH . G 5 HOH A 49 549 34 HOH HOH . G 5 HOH A 50 550 55 HOH HOH . G 5 HOH A 51 551 48 HOH HOH . G 5 HOH A 52 552 153 HOH HOH . G 5 HOH A 53 553 104 HOH HOH . G 5 HOH A 54 554 137 HOH HOH . G 5 HOH A 55 555 39 HOH HOH . G 5 HOH A 56 556 93 HOH HOH . G 5 HOH A 57 557 133 HOH HOH . G 5 HOH A 58 558 10 HOH HOH . G 5 HOH A 59 559 100 HOH HOH . G 5 HOH A 60 560 67 HOH HOH . G 5 HOH A 61 561 151 HOH HOH . G 5 HOH A 62 562 64 HOH HOH . G 5 HOH A 63 563 16 HOH HOH . G 5 HOH A 64 564 91 HOH HOH . G 5 HOH A 65 565 68 HOH HOH . G 5 HOH A 66 566 150 HOH HOH . G 5 HOH A 67 567 89 HOH HOH . G 5 HOH A 68 568 3 HOH HOH . G 5 HOH A 69 569 15 HOH HOH . G 5 HOH A 70 570 31 HOH HOH . G 5 HOH A 71 571 147 HOH HOH . G 5 HOH A 72 572 14 HOH HOH . G 5 HOH A 73 573 146 HOH HOH . G 5 HOH A 74 574 32 HOH HOH . G 5 HOH A 75 575 9 HOH HOH . G 5 HOH A 76 576 18 HOH HOH . G 5 HOH A 77 577 94 HOH HOH . G 5 HOH A 78 578 86 HOH HOH . G 5 HOH A 79 579 105 HOH HOH . G 5 HOH A 80 580 28 HOH HOH . G 5 HOH A 81 581 148 HOH HOH . G 5 HOH A 82 582 110 HOH HOH . G 5 HOH A 83 583 30 HOH HOH . G 5 HOH A 84 584 78 HOH HOH . G 5 HOH A 85 585 6 HOH HOH . G 5 HOH A 86 586 80 HOH HOH . G 5 HOH A 87 587 108 HOH HOH . G 5 HOH A 88 588 84 HOH HOH . G 5 HOH A 89 589 107 HOH HOH . G 5 HOH A 90 590 26 HOH HOH . G 5 HOH A 91 591 42 HOH HOH . G 5 HOH A 92 592 57 HOH HOH . G 5 HOH A 93 593 75 HOH HOH . G 5 HOH A 94 594 126 HOH HOH . G 5 HOH A 95 595 98 HOH HOH . G 5 HOH A 96 596 158 HOH HOH . G 5 HOH A 97 597 53 HOH HOH . G 5 HOH A 98 598 121 HOH HOH . G 5 HOH A 99 599 101 HOH HOH . G 5 HOH A 100 600 4 HOH HOH . G 5 HOH A 101 601 40 HOH HOH . G 5 HOH A 102 602 60 HOH HOH . G 5 HOH A 103 603 52 HOH HOH . G 5 HOH A 104 604 129 HOH HOH . G 5 HOH A 105 605 35 HOH HOH . G 5 HOH A 106 606 130 HOH HOH . G 5 HOH A 107 607 106 HOH HOH . G 5 HOH A 108 608 25 HOH HOH . G 5 HOH A 109 609 2 HOH HOH . G 5 HOH A 110 610 63 HOH HOH . G 5 HOH A 111 611 132 HOH HOH . G 5 HOH A 112 612 21 HOH HOH . G 5 HOH A 113 613 8 HOH HOH . G 5 HOH A 114 614 131 HOH HOH . G 5 HOH A 115 615 65 HOH HOH . G 5 HOH A 116 616 54 HOH HOH . G 5 HOH A 117 617 36 HOH HOH . G 5 HOH A 118 618 11 HOH HOH . G 5 HOH A 119 619 95 HOH HOH . G 5 HOH A 120 620 76 HOH HOH . G 5 HOH A 121 621 139 HOH HOH . G 5 HOH A 122 622 1 HOH HOH . G 5 HOH A 123 623 5 HOH HOH . G 5 HOH A 124 624 134 HOH HOH . G 5 HOH A 125 625 58 HOH HOH . G 5 HOH A 126 626 127 HOH HOH . G 5 HOH A 127 627 62 HOH HOH . G 5 HOH A 128 628 97 HOH HOH . G 5 HOH A 129 629 43 HOH HOH . G 5 HOH A 130 630 123 HOH HOH . G 5 HOH A 131 631 125 HOH HOH . G 5 HOH A 132 632 56 HOH HOH . G 5 HOH A 133 633 122 HOH HOH . G 5 HOH A 134 634 159 HOH HOH . G 5 HOH A 135 635 140 HOH HOH . G 5 HOH A 136 636 128 HOH HOH . G 5 HOH A 137 637 141 HOH HOH . G 5 HOH A 138 638 90 HOH HOH . G 5 HOH A 139 639 135 HOH HOH . G 5 HOH A 140 640 71 HOH HOH . G 5 HOH A 141 641 73 HOH HOH . G 5 HOH A 142 642 144 HOH HOH . G 5 HOH A 143 643 109 HOH HOH . G 5 HOH A 144 644 149 HOH HOH . G 5 HOH A 145 645 116 HOH HOH . G 5 HOH A 146 646 74 HOH HOH . G 5 HOH A 147 647 83 HOH HOH . G 5 HOH A 148 648 69 HOH HOH . G 5 HOH A 149 649 46 HOH HOH . G 5 HOH A 150 650 143 HOH HOH . G 5 HOH A 151 651 136 HOH HOH . G 5 HOH A 152 652 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 -15.448 -7.369 13.881 1 50.35 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . D 3 -15.976 -6.163 13.185 1 47.07 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . D 3 -16.619 -8.375 13.994 1 57.33 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . D 3 -16.223 -9.727 13.992 1 66.75 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . D 3 -17.298 -8.039 15.344 1 57.07 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . D 3 -16.265 -7.977 16.363 1 50.28 ? O3 GOL 403 A 1 HETATM 7 H H11 GOL . . . D 3 -15.109 -7.169 14.767 1 60.43 ? H11 GOL 403 A 1 HETATM 8 H H12 GOL . . . D 3 -14.713 -7.784 13.402 1 60.43 ? H12 GOL 403 A 1 HETATM 9 H HO1 GOL . . . D 3 -16.304 -5.656 13.796 1 56.49 ? HO1 GOL 403 A 1 HETATM 10 H H2 GOL . . . D 3 -17.197 -8.257 13.224 1 68.79 ? H2 GOL 403 A 1 HETATM 11 H HO2 GOL . . . D 3 -15.799 -9.872 13.277 1 80.09 ? HO2 GOL 403 A 1 HETATM 12 H H31 GOL . . . D 3 -17.973 -8.712 15.526 1 68.48 ? H31 GOL 403 A 1 HETATM 13 H H32 GOL . . . D 3 -17.787 -7.207 15.245 1 68.48 ? H32 GOL 403 A 1 HETATM 14 H HO3 GOL . . . D 3 -16.066 -7.152 16.478 1 60.33 ? HO3 GOL 403 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 21 _model_server_stats.element_count 14 #