data_8PT3 # _model_server_result.job_id yasRAJ6KknjLrZCJmWhHvw _model_server_result.datetime_utc '2024-11-25 04:00:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pt3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":405}' # _entry.id 8PT3 # _exptl.entry_id 8PT3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PT3 _cell.length_a 41.937 _cell.length_b 78.471 _cell.length_c 122.744 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PT3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NE2 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 129 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 125 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C3 _struct_conn.ptnr2_label_comp_id D7O _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id D7O _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.55 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8PT3 _atom_sites.fract_transf_matrix[1][1] 0.023845 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012744 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 D7O A 1 401 402 D7O R77 . C 3 GOL A 1 402 403 GOL GOL . D 3 GOL A 1 403 404 GOL GOL . E 3 GOL A 1 404 405 GOL GOL . F 4 ANP A 1 405 406 ANP ANP . G 5 HOH A 1 501 70 HOH HOH . G 5 HOH A 2 502 47 HOH HOH . G 5 HOH A 3 503 85 HOH HOH . G 5 HOH A 4 504 29 HOH HOH . G 5 HOH A 5 505 77 HOH HOH . G 5 HOH A 6 506 33 HOH HOH . G 5 HOH A 7 507 37 HOH HOH . G 5 HOH A 8 508 117 HOH HOH . G 5 HOH A 9 509 96 HOH HOH . G 5 HOH A 10 510 66 HOH HOH . G 5 HOH A 11 511 145 HOH HOH . G 5 HOH A 12 512 12 HOH HOH . G 5 HOH A 13 513 44 HOH HOH . G 5 HOH A 14 514 103 HOH HOH . G 5 HOH A 15 515 20 HOH HOH . G 5 HOH A 16 516 51 HOH HOH . G 5 HOH A 17 517 87 HOH HOH . G 5 HOH A 18 518 102 HOH HOH . G 5 HOH A 19 519 138 HOH HOH . G 5 HOH A 20 520 41 HOH HOH . G 5 HOH A 21 521 72 HOH HOH . G 5 HOH A 22 522 81 HOH HOH . G 5 HOH A 23 523 7 HOH HOH . G 5 HOH A 24 524 13 HOH HOH . G 5 HOH A 25 525 88 HOH HOH . G 5 HOH A 26 526 111 HOH HOH . G 5 HOH A 27 527 22 HOH HOH . G 5 HOH A 28 528 50 HOH HOH . G 5 HOH A 29 529 49 HOH HOH . G 5 HOH A 30 530 59 HOH HOH . G 5 HOH A 31 531 24 HOH HOH . G 5 HOH A 32 532 99 HOH HOH . G 5 HOH A 33 533 82 HOH HOH . G 5 HOH A 34 534 92 HOH HOH . G 5 HOH A 35 535 17 HOH HOH . G 5 HOH A 36 536 112 HOH HOH . G 5 HOH A 37 537 114 HOH HOH . G 5 HOH A 38 538 61 HOH HOH . G 5 HOH A 39 539 113 HOH HOH . G 5 HOH A 40 540 23 HOH HOH . G 5 HOH A 41 541 124 HOH HOH . G 5 HOH A 42 542 152 HOH HOH . G 5 HOH A 43 543 45 HOH HOH . G 5 HOH A 44 544 142 HOH HOH . G 5 HOH A 45 545 115 HOH HOH . G 5 HOH A 46 546 19 HOH HOH . G 5 HOH A 47 547 27 HOH HOH . G 5 HOH A 48 548 38 HOH HOH . G 5 HOH A 49 549 34 HOH HOH . G 5 HOH A 50 550 55 HOH HOH . G 5 HOH A 51 551 48 HOH HOH . G 5 HOH A 52 552 153 HOH HOH . G 5 HOH A 53 553 104 HOH HOH . G 5 HOH A 54 554 137 HOH HOH . G 5 HOH A 55 555 39 HOH HOH . G 5 HOH A 56 556 93 HOH HOH . G 5 HOH A 57 557 133 HOH HOH . G 5 HOH A 58 558 10 HOH HOH . G 5 HOH A 59 559 100 HOH HOH . G 5 HOH A 60 560 67 HOH HOH . G 5 HOH A 61 561 151 HOH HOH . G 5 HOH A 62 562 64 HOH HOH . G 5 HOH A 63 563 16 HOH HOH . G 5 HOH A 64 564 91 HOH HOH . G 5 HOH A 65 565 68 HOH HOH . G 5 HOH A 66 566 150 HOH HOH . G 5 HOH A 67 567 89 HOH HOH . G 5 HOH A 68 568 3 HOH HOH . G 5 HOH A 69 569 15 HOH HOH . G 5 HOH A 70 570 31 HOH HOH . G 5 HOH A 71 571 147 HOH HOH . G 5 HOH A 72 572 14 HOH HOH . G 5 HOH A 73 573 146 HOH HOH . G 5 HOH A 74 574 32 HOH HOH . G 5 HOH A 75 575 9 HOH HOH . G 5 HOH A 76 576 18 HOH HOH . G 5 HOH A 77 577 94 HOH HOH . G 5 HOH A 78 578 86 HOH HOH . G 5 HOH A 79 579 105 HOH HOH . G 5 HOH A 80 580 28 HOH HOH . G 5 HOH A 81 581 148 HOH HOH . G 5 HOH A 82 582 110 HOH HOH . G 5 HOH A 83 583 30 HOH HOH . G 5 HOH A 84 584 78 HOH HOH . G 5 HOH A 85 585 6 HOH HOH . G 5 HOH A 86 586 80 HOH HOH . G 5 HOH A 87 587 108 HOH HOH . G 5 HOH A 88 588 84 HOH HOH . G 5 HOH A 89 589 107 HOH HOH . G 5 HOH A 90 590 26 HOH HOH . G 5 HOH A 91 591 42 HOH HOH . G 5 HOH A 92 592 57 HOH HOH . G 5 HOH A 93 593 75 HOH HOH . G 5 HOH A 94 594 126 HOH HOH . G 5 HOH A 95 595 98 HOH HOH . G 5 HOH A 96 596 158 HOH HOH . G 5 HOH A 97 597 53 HOH HOH . G 5 HOH A 98 598 121 HOH HOH . G 5 HOH A 99 599 101 HOH HOH . G 5 HOH A 100 600 4 HOH HOH . G 5 HOH A 101 601 40 HOH HOH . G 5 HOH A 102 602 60 HOH HOH . G 5 HOH A 103 603 52 HOH HOH . G 5 HOH A 104 604 129 HOH HOH . G 5 HOH A 105 605 35 HOH HOH . G 5 HOH A 106 606 130 HOH HOH . G 5 HOH A 107 607 106 HOH HOH . G 5 HOH A 108 608 25 HOH HOH . G 5 HOH A 109 609 2 HOH HOH . G 5 HOH A 110 610 63 HOH HOH . G 5 HOH A 111 611 132 HOH HOH . G 5 HOH A 112 612 21 HOH HOH . G 5 HOH A 113 613 8 HOH HOH . G 5 HOH A 114 614 131 HOH HOH . G 5 HOH A 115 615 65 HOH HOH . G 5 HOH A 116 616 54 HOH HOH . G 5 HOH A 117 617 36 HOH HOH . G 5 HOH A 118 618 11 HOH HOH . G 5 HOH A 119 619 95 HOH HOH . G 5 HOH A 120 620 76 HOH HOH . G 5 HOH A 121 621 139 HOH HOH . G 5 HOH A 122 622 1 HOH HOH . G 5 HOH A 123 623 5 HOH HOH . G 5 HOH A 124 624 134 HOH HOH . G 5 HOH A 125 625 58 HOH HOH . G 5 HOH A 126 626 127 HOH HOH . G 5 HOH A 127 627 62 HOH HOH . G 5 HOH A 128 628 97 HOH HOH . G 5 HOH A 129 629 43 HOH HOH . G 5 HOH A 130 630 123 HOH HOH . G 5 HOH A 131 631 125 HOH HOH . G 5 HOH A 132 632 56 HOH HOH . G 5 HOH A 133 633 122 HOH HOH . G 5 HOH A 134 634 159 HOH HOH . G 5 HOH A 135 635 140 HOH HOH . G 5 HOH A 136 636 128 HOH HOH . G 5 HOH A 137 637 141 HOH HOH . G 5 HOH A 138 638 90 HOH HOH . G 5 HOH A 139 639 135 HOH HOH . G 5 HOH A 140 640 71 HOH HOH . G 5 HOH A 141 641 73 HOH HOH . G 5 HOH A 142 642 144 HOH HOH . G 5 HOH A 143 643 109 HOH HOH . G 5 HOH A 144 644 149 HOH HOH . G 5 HOH A 145 645 116 HOH HOH . G 5 HOH A 146 646 74 HOH HOH . G 5 HOH A 147 647 83 HOH HOH . G 5 HOH A 148 648 69 HOH HOH . G 5 HOH A 149 649 46 HOH HOH . G 5 HOH A 150 650 143 HOH HOH . G 5 HOH A 151 651 136 HOH HOH . G 5 HOH A 152 652 160 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . F 4 -22.901 -10.689 19.398 1 110.4 ? PG ANP 405 A 1 HETATM 2 O O1G ANP . . . F 4 -24.001 -10.904 18.384 1 86.47 ? O1G ANP 405 A 1 HETATM 3 O O2G ANP . . . F 4 -23.577 -10.873 20.815 1 81.73 ? O2G ANP 405 A 1 HETATM 4 O O3G ANP . . . F 4 -22.278 -9.218 19.347 1 83.85 ? O3G ANP 405 A 1 HETATM 5 P PB ANP . . . F 4 -21.293 -12.113 17.543 1 108.21 ? PB ANP 405 A 1 HETATM 6 O O1B ANP . . . F 4 -19.916 -11.63 17.224 1 74.32 ? O1B ANP 405 A 1 HETATM 7 O O2B ANP . . . F 4 -21.344 -13.659 17.25 1 76.91 ? O2B ANP 405 A 1 HETATM 8 N N3B ANP . . . F 4 -21.634 -11.828 19.179 1 73.12 ? N3B ANP 405 A 1 HETATM 9 P PA ANP . . . F 4 -22.536 -11.406 15.087 1 107.38 ? PA ANP 405 A 1 HETATM 10 O O1A ANP . . . F 4 -23.276 -10.256 14.505 1 79.42 ? O1A ANP 405 A 1 HETATM 11 O O2A ANP . . . F 4 -21.128 -11.57 14.496 1 93.77 ? O2A ANP 405 A 1 HETATM 12 O O3A ANP . . . F 4 -22.332 -11.288 16.679 1 105.52 ? O3A ANP 405 A 1 HETATM 13 O O5' ANP . . . F 4 -23.456 -12.695 14.861 1 84.64 ? O5' ANP 405 A 1 HETATM 14 C C5' ANP . . . F 4 -24.536 -12.688 13.906 1 63.85 ? C5' ANP 405 A 1 HETATM 15 C C4' ANP . . . F 4 -25.139 -14.06 13.748 1 56.73 ? C4' ANP 405 A 1 HETATM 16 O O4' ANP . . . F 4 -24.304 -14.829 12.851 1 58.24 ? O4' ANP 405 A 1 HETATM 17 C C3' ANP . . . F 4 -25.302 -14.901 15.015 1 60.49 ? C3' ANP 405 A 1 HETATM 18 O O3' ANP . . . F 4 -26.575 -15.533 14.937 1 54.2 ? O3' ANP 405 A 1 HETATM 19 C C2' ANP . . . F 4 -24.116 -15.874 14.952 1 60.22 ? C2' ANP 405 A 1 HETATM 20 O O2' ANP . . . F 4 -24.381 -17.123 15.585 1 52.93 ? O2' ANP 405 A 1 HETATM 21 C C1' ANP . . . F 4 -23.969 -16.067 13.446 1 55.94 ? C1' ANP 405 A 1 HETATM 22 N N9 ANP . . . F 4 -22.637 -16.479 12.995 1 54.56 ? N9 ANP 405 A 1 HETATM 23 C C8 ANP . . . F 4 -21.435 -15.82 13.103 1 51.32 ? C8 ANP 405 A 1 HETATM 24 N N7 ANP . . . F 4 -20.427 -16.466 12.567 1 51.95 ? N7 ANP 405 A 1 HETATM 25 C C5 ANP . . . F 4 -20.996 -17.639 12.089 1 46.74 ? C5 ANP 405 A 1 HETATM 26 C C6 ANP . . . F 4 -20.463 -18.759 11.412 1 40.99 ? C6 ANP 405 A 1 HETATM 27 N N6 ANP . . . F 4 -19.164 -18.904 11.11 1 32 ? N6 ANP 405 A 1 HETATM 28 N N1 ANP . . . F 4 -21.315 -19.758 11.083 1 34.26 ? N1 ANP 405 A 1 HETATM 29 C C2 ANP . . . F 4 -22.611 -19.622 11.376 1 40.74 ? C2 ANP 405 A 1 HETATM 30 N N3 ANP . . . F 4 -23.227 -18.628 12.024 1 42.92 ? N3 ANP 405 A 1 HETATM 31 C C4 ANP . . . F 4 -22.363 -17.654 12.34 1 49.12 ? C4 ANP 405 A 1 HETATM 32 H HNB1 ANP . . . F 4 -20.885 -11.502 19.575 1 87.75 ? HNB1 ANP 405 A 1 HETATM 33 H "H5'1" ANP . . . F 4 -24.193 -12.39 13.046 1 76.62 ? "H5'1" ANP 405 A 1 HETATM 34 H "H5'2" ANP . . . F 4 -25.223 -12.072 14.213 1 76.62 ? "H5'2" ANP 405 A 1 HETATM 35 H H4' ANP . . . F 4 -26.028 -13.997 13.342 1 68.07 ? H4' ANP 405 A 1 HETATM 36 H H3' ANP . . . F 4 -25.194 -14.379 15.813 1 72.58 ? H3' ANP 405 A 1 HETATM 37 H HO3' ANP . . . F 4 -26.68 -15.897 14.136 1 65.04 ? HO3' ANP 405 A 1 HETATM 38 H H2' ANP . . . F 4 -23.326 -15.453 15.311 1 72.26 ? H2' ANP 405 A 1 HETATM 39 H HO2' ANP . . . F 4 -24.232 -17.783 15.01 1 63.52 ? HO2' ANP 405 A 1 HETATM 40 H H1' ANP . . . F 4 -24.612 -16.74 13.173 1 67.13 ? H1' ANP 405 A 1 HETATM 41 H H8 ANP . . . F 4 -21.342 -14.969 13.53 1 61.59 ? H8 ANP 405 A 1 HETATM 42 H HN61 ANP . . . F 4 -18.591 -18.189 11.217 1 38.4 ? HN61 ANP 405 A 1 HETATM 43 H HN62 ANP . . . F 4 -18.844 -19.703 10.805 1 38.4 ? HN62 ANP 405 A 1 HETATM 44 H H2 ANP . . . F 4 -23.186 -20.345 11.077 1 48.88 ? H2 ANP 405 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 27 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 44 #