data_8PT5
#
_model_server_result.job_id            FzQiNTQpvkWOfpsEwZmghw 
_model_server_result.datetime_utc      '2024-11-05 00:10:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pt5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":401}' 
#
_entry.id    8PT5 
#
_exptl.entry_id    8PT5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PT5 
_cell.length_a            41.442 
_cell.length_b            76.836 
_cell.length_c            123.322 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PT5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 129 A HIS 125 1_555 C C3 D5R . A D5R 402 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.523 ? 
covale ? covale2 A SG CYS 165 A CYS 161 1_555 C C3 D5R . A D5R 402 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.74 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     8PT5 
_atom_sites.fract_transf_matrix[1][1]    0.02413 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013015 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ANP A 1 401 401 ANP ANP . 
C 3 D5R A 1 402 502 D5R 187 . 
D 4 GOL A 1 403 601 GOL GOL . 
E 5 HOH A 1 501 45 HOH HOH . 
E 5 HOH A 2 502 15 HOH HOH . 
E 5 HOH A 3 503 56 HOH HOH . 
E 5 HOH A 4 504 65 HOH HOH . 
E 5 HOH A 5 505 66 HOH HOH . 
E 5 HOH A 6 506 37 HOH HOH . 
E 5 HOH A 7 507 10 HOH HOH . 
E 5 HOH A 8 508 35 HOH HOH . 
E 5 HOH A 9 509 70 HOH HOH . 
E 5 HOH A 10 510 34 HOH HOH . 
E 5 HOH A 11 511 39 HOH HOH . 
E 5 HOH A 12 512 23 HOH HOH . 
E 5 HOH A 13 513 41 HOH HOH . 
E 5 HOH A 14 514 22 HOH HOH . 
E 5 HOH A 15 515 42 HOH HOH . 
E 5 HOH A 16 516 60 HOH HOH . 
E 5 HOH A 17 517 86 HOH HOH . 
E 5 HOH A 18 518 53 HOH HOH . 
E 5 HOH A 19 519 12 HOH HOH . 
E 5 HOH A 20 520 6 HOH HOH . 
E 5 HOH A 21 521 16 HOH HOH . 
E 5 HOH A 22 522 27 HOH HOH . 
E 5 HOH A 23 523 38 HOH HOH . 
E 5 HOH A 24 524 18 HOH HOH . 
E 5 HOH A 25 525 50 HOH HOH . 
E 5 HOH A 26 526 77 HOH HOH . 
E 5 HOH A 27 527 59 HOH HOH . 
E 5 HOH A 28 528 55 HOH HOH . 
E 5 HOH A 29 529 61 HOH HOH . 
E 5 HOH A 30 530 1 HOH HOH . 
E 5 HOH A 31 531 82 HOH HOH . 
E 5 HOH A 32 532 24 HOH HOH . 
E 5 HOH A 33 533 57 HOH HOH . 
E 5 HOH A 34 534 31 HOH HOH . 
E 5 HOH A 35 535 47 HOH HOH . 
E 5 HOH A 36 536 5 HOH HOH . 
E 5 HOH A 37 537 74 HOH HOH . 
E 5 HOH A 38 538 9 HOH HOH . 
E 5 HOH A 39 539 51 HOH HOH . 
E 5 HOH A 40 540 40 HOH HOH . 
E 5 HOH A 41 541 69 HOH HOH . 
E 5 HOH A 42 542 33 HOH HOH . 
E 5 HOH A 43 543 58 HOH HOH . 
E 5 HOH A 44 544 71 HOH HOH . 
E 5 HOH A 45 545 44 HOH HOH . 
E 5 HOH A 46 546 21 HOH HOH . 
E 5 HOH A 47 547 54 HOH HOH . 
E 5 HOH A 48 548 20 HOH HOH . 
E 5 HOH A 49 549 13 HOH HOH . 
E 5 HOH A 50 550 30 HOH HOH . 
E 5 HOH A 51 551 83 HOH HOH . 
E 5 HOH A 52 552 19 HOH HOH . 
E 5 HOH A 53 553 7 HOH HOH . 
E 5 HOH A 54 554 32 HOH HOH . 
E 5 HOH A 55 555 17 HOH HOH . 
E 5 HOH A 56 556 49 HOH HOH . 
E 5 HOH A 57 557 26 HOH HOH . 
E 5 HOH A 58 558 8 HOH HOH . 
E 5 HOH A 59 559 4 HOH HOH . 
E 5 HOH A 60 560 2 HOH HOH . 
E 5 HOH A 61 561 29 HOH HOH . 
E 5 HOH A 62 562 14 HOH HOH . 
E 5 HOH A 63 563 46 HOH HOH . 
E 5 HOH A 64 564 79 HOH HOH . 
E 5 HOH A 65 565 52 HOH HOH . 
E 5 HOH A 66 566 72 HOH HOH . 
E 5 HOH A 67 567 68 HOH HOH . 
E 5 HOH A 68 568 3 HOH HOH . 
E 5 HOH A 69 569 43 HOH HOH . 
E 5 HOH A 70 570 28 HOH HOH . 
E 5 HOH A 71 571 25 HOH HOH . 
E 5 HOH A 72 572 85 HOH HOH . 
E 5 HOH A 73 573 11 HOH HOH . 
E 5 HOH A 74 574 67 HOH HOH . 
E 5 HOH A 75 575 48 HOH HOH . 
E 5 HOH A 76 576 78 HOH HOH . 
E 5 HOH A 77 577 62 HOH HOH . 
E 5 HOH A 78 578 76 HOH HOH . 
E 5 HOH A 79 579 64 HOH HOH . 
E 5 HOH A 80 580 81 HOH HOH . 
E 5 HOH A 81 581 63 HOH HOH . 
E 5 HOH A 82 582 73 HOH HOH . 
E 5 HOH A 83 583 80 HOH HOH . 
E 5 HOH A 84 584 84 HOH HOH . 
E 5 HOH A 85 585 36 HOH HOH . 
E 5 HOH A 86 586 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . B 2 -20.473 -8.932 18.423 1 37.91 ? PG ANP 401 A 1 
HETATM 2 O O1G ANP . . . B 2 -19.77 -9.006 19.747 1 37.75 ? O1G ANP 401 A 1 
HETATM 3 O O2G ANP . . . B 2 -21.273 -10.269 18.17 1 40.18 ? O2G ANP 401 A 1 
HETATM 4 O O3G ANP . . . B 2 -21.497 -7.727 18.41 1 38.77 ? O3G ANP 401 A 1 
HETATM 5 P PB ANP . . . B 2 -19.707 -8.8 15.621 1 39.43 ? PB ANP 401 A 1 
HETATM 6 O O1B ANP . . . B 2 -20.834 -7.848 15.35 1 36.74 ? O1B ANP 401 A 1 
HETATM 7 O O2B ANP . . . B 2 -18.474 -8.332 14.78 1 36.77 ? O2B ANP 401 A 1 
HETATM 8 N N3B ANP . . . B 2 -19.255 -8.729 17.252 1 37.13 ? N3B ANP 401 A 1 
HETATM 9 P PA ANP . . . B 2 -19.661 -11.66 15.52 1 38.57 ? PA ANP 401 A 1 
HETATM 10 O O1A ANP . . . B 2 -18.313 -11.959 14.97 1 39.01 ? O1A ANP 401 A 1 
HETATM 11 O O2A ANP . . . B 2 -19.728 -11.8 17.043 1 39.42 ? O2A ANP 401 A 1 
HETATM 12 O O3A ANP . . . B 2 -20.173 -10.211 15.104 1 39 ? O3A ANP 401 A 1 
HETATM 13 O O5' ANP . . . B 2 -20.713 -12.618 14.819 1 40.01 ? O5' ANP 401 A 1 
HETATM 14 C C5' ANP . . . B 2 -22.151 -12.441 14.935 1 33.76 ? C5' ANP 401 A 1 
HETATM 15 C C4' ANP . . . B 2 -22.825 -13.796 15.003 1 33.05 ? C4' ANP 401 A 1 
HETATM 16 O O4' ANP . . . B 2 -22.768 -14.452 13.714 1 34.88 ? O4' ANP 401 A 1 
HETATM 17 C C3' ANP . . . B 2 -22.211 -14.795 15.978 1 38.21 ? C3' ANP 401 A 1 
HETATM 18 O O3' ANP . . . B 2 -22.675 -14.627 17.314 1 35.8 ? O3' ANP 401 A 1 
HETATM 19 C C2' ANP . . . B 2 -22.655 -16.131 15.389 1 35.91 ? C2' ANP 401 A 1 
HETATM 20 O O2' ANP . . . B 2 -23.998 -16.445 15.732 1 38.46 ? O2' ANP 401 A 1 
HETATM 21 C C1' ANP . . . B 2 -22.566 -15.846 13.888 1 32.19 ? C1' ANP 401 A 1 
HETATM 22 N N9 ANP . . . B 2 -21.28 -16.195 13.307 1 28.39 ? N9 ANP 401 A 1 
HETATM 23 C C8 ANP . . . B 2 -20.138 -15.436 13.31 1 31.11 ? C8 ANP 401 A 1 
HETATM 24 N N7 ANP . . . B 2 -19.122 -15.997 12.7 1 30.9 ? N7 ANP 401 A 1 
HETATM 25 C C5 ANP . . . B 2 -19.635 -17.206 12.256 1 27.24 ? C5 ANP 401 A 1 
HETATM 26 C C6 ANP . . . B 2 -19.065 -18.267 11.519 1 30.94 ? C6 ANP 401 A 1 
HETATM 27 N N6 ANP . . . B 2 -17.797 -18.279 11.096 1 28.3 ? N6 ANP 401 A 1 
HETATM 28 N N1 ANP . . . B 2 -19.854 -19.33 11.235 1 24.64 ? N1 ANP 401 A 1 
HETATM 29 C C2 ANP . . . B 2 -21.121 -19.324 11.662 1 32.03 ? C2 ANP 401 A 1 
HETATM 30 N N3 ANP . . . B 2 -21.763 -18.385 12.364 1 34.24 ? N3 ANP 401 A 1 
HETATM 31 C C4 ANP . . . B 2 -20.961 -17.347 12.627 1 29.38 ? C4 ANP 401 A 1 
#
_model_server_stats.io_time_ms              12 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    17 
_model_server_stats.query_time_ms           276 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           31 
#