data_8PT5 # _model_server_result.job_id 85oDUrPoZMjlFehnd4UeNw _model_server_result.datetime_utc '2024-11-05 00:09:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pt5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8PT5 # _exptl.entry_id 8PT5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 270.321 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{O}3-~{tert}-butyl ~{O}1-methyl (1~{S},3~{R})-1-methyl-4-oxidanylidene-cyclohexane-1,3-dicarboxylate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PT5 _cell.length_a 41.442 _cell.length_b 76.836 _cell.length_c 123.322 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PT5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NE2 HIS 129 A HIS 125 1_555 C C3 D5R . A D5R 402 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.523 ? covale ? covale2 A SG CYS 165 A CYS 161 1_555 C C3 D5R . A D5R 402 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.74 ? # _chem_comp.formula 'C14 H22 O5' _chem_comp.formula_weight 270.321 _chem_comp.id D5R _chem_comp.mon_nstd_flag . _chem_comp.name '~{O}3-~{tert}-butyl ~{O}1-methyl (1~{S},3~{R})-1-methyl-4-oxidanylidene-cyclohexane-1,3-dicarboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C19 C17 D5R sing 133 n n C20 C17 D5R sing 134 n n C17 O3 D5R sing 135 n n C17 C18 D5R sing 136 n n O3 C16 D5R sing 137 n n O2 C16 D5R doub 138 n n C16 C2 D5R sing 139 n n C7 C4 D5R sing 140 n n C2 C3 D5R sing 141 n n C2 C1 D5R sing 142 n n C3 C4 D5R sing 143 n n C4 C14 D5R sing 144 n n C4 C5 D5R sing 145 n n O C14 D5R sing 146 n n O C15 D5R sing 147 n n C1 C6 D5R sing 148 n n C1 O4 D5R doub 149 n n C14 O1 D5R doub 150 n n C6 C5 D5R sing 151 n n C2 H1 D5R sing 152 n n C3 H2 D5R sing 153 n n C3 H3 D5R sing 154 n n C5 H4 D5R sing 155 n n C5 H5 D5R sing 156 n n C6 H6 D5R sing 157 n n C6 H7 D5R sing 158 n n C20 H8 D5R sing 159 n n C20 H9 D5R sing 160 n n C20 H10 D5R sing 161 n n C7 H11 D5R sing 162 n n C7 H12 D5R sing 163 n n C7 H13 D5R sing 164 n n C18 H14 D5R sing 165 n n C18 H15 D5R sing 166 n n C18 H16 D5R sing 167 n n C15 H17 D5R sing 168 n n C15 H18 D5R sing 169 n n C15 H19 D5R sing 170 n n C19 H20 D5R sing 171 n n C19 H21 D5R sing 172 n n C19 H22 D5R sing 173 n n # _atom_sites.entry_id 8PT5 _atom_sites.fract_transf_matrix[1][1] 0.02413 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013015 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008109 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ANP A 1 401 401 ANP ANP . C 3 D5R A 1 402 502 D5R 187 . D 4 GOL A 1 403 601 GOL GOL . E 5 HOH A 1 501 45 HOH HOH . E 5 HOH A 2 502 15 HOH HOH . E 5 HOH A 3 503 56 HOH HOH . E 5 HOH A 4 504 65 HOH HOH . E 5 HOH A 5 505 66 HOH HOH . E 5 HOH A 6 506 37 HOH HOH . E 5 HOH A 7 507 10 HOH HOH . E 5 HOH A 8 508 35 HOH HOH . E 5 HOH A 9 509 70 HOH HOH . E 5 HOH A 10 510 34 HOH HOH . E 5 HOH A 11 511 39 HOH HOH . E 5 HOH A 12 512 23 HOH HOH . E 5 HOH A 13 513 41 HOH HOH . E 5 HOH A 14 514 22 HOH HOH . E 5 HOH A 15 515 42 HOH HOH . E 5 HOH A 16 516 60 HOH HOH . E 5 HOH A 17 517 86 HOH HOH . E 5 HOH A 18 518 53 HOH HOH . E 5 HOH A 19 519 12 HOH HOH . E 5 HOH A 20 520 6 HOH HOH . E 5 HOH A 21 521 16 HOH HOH . E 5 HOH A 22 522 27 HOH HOH . E 5 HOH A 23 523 38 HOH HOH . E 5 HOH A 24 524 18 HOH HOH . E 5 HOH A 25 525 50 HOH HOH . E 5 HOH A 26 526 77 HOH HOH . E 5 HOH A 27 527 59 HOH HOH . E 5 HOH A 28 528 55 HOH HOH . E 5 HOH A 29 529 61 HOH HOH . E 5 HOH A 30 530 1 HOH HOH . E 5 HOH A 31 531 82 HOH HOH . E 5 HOH A 32 532 24 HOH HOH . E 5 HOH A 33 533 57 HOH HOH . E 5 HOH A 34 534 31 HOH HOH . E 5 HOH A 35 535 47 HOH HOH . E 5 HOH A 36 536 5 HOH HOH . E 5 HOH A 37 537 74 HOH HOH . E 5 HOH A 38 538 9 HOH HOH . E 5 HOH A 39 539 51 HOH HOH . E 5 HOH A 40 540 40 HOH HOH . E 5 HOH A 41 541 69 HOH HOH . E 5 HOH A 42 542 33 HOH HOH . E 5 HOH A 43 543 58 HOH HOH . E 5 HOH A 44 544 71 HOH HOH . E 5 HOH A 45 545 44 HOH HOH . E 5 HOH A 46 546 21 HOH HOH . E 5 HOH A 47 547 54 HOH HOH . E 5 HOH A 48 548 20 HOH HOH . E 5 HOH A 49 549 13 HOH HOH . E 5 HOH A 50 550 30 HOH HOH . E 5 HOH A 51 551 83 HOH HOH . E 5 HOH A 52 552 19 HOH HOH . E 5 HOH A 53 553 7 HOH HOH . E 5 HOH A 54 554 32 HOH HOH . E 5 HOH A 55 555 17 HOH HOH . E 5 HOH A 56 556 49 HOH HOH . E 5 HOH A 57 557 26 HOH HOH . E 5 HOH A 58 558 8 HOH HOH . E 5 HOH A 59 559 4 HOH HOH . E 5 HOH A 60 560 2 HOH HOH . E 5 HOH A 61 561 29 HOH HOH . E 5 HOH A 62 562 14 HOH HOH . E 5 HOH A 63 563 46 HOH HOH . E 5 HOH A 64 564 79 HOH HOH . E 5 HOH A 65 565 52 HOH HOH . E 5 HOH A 66 566 72 HOH HOH . E 5 HOH A 67 567 68 HOH HOH . E 5 HOH A 68 568 3 HOH HOH . E 5 HOH A 69 569 43 HOH HOH . E 5 HOH A 70 570 28 HOH HOH . E 5 HOH A 71 571 25 HOH HOH . E 5 HOH A 72 572 85 HOH HOH . E 5 HOH A 73 573 11 HOH HOH . E 5 HOH A 74 574 67 HOH HOH . E 5 HOH A 75 575 48 HOH HOH . E 5 HOH A 76 576 78 HOH HOH . E 5 HOH A 77 577 62 HOH HOH . E 5 HOH A 78 578 76 HOH HOH . E 5 HOH A 79 579 64 HOH HOH . E 5 HOH A 80 580 81 HOH HOH . E 5 HOH A 81 581 63 HOH HOH . E 5 HOH A 82 582 73 HOH HOH . E 5 HOH A 83 583 80 HOH HOH . E 5 HOH A 84 584 84 HOH HOH . E 5 HOH A 85 585 36 HOH HOH . E 5 HOH A 86 586 75 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 D5R . A . C 3 -24.756 -30.654 21.853 0.42 53.37 ? C1 D5R 402 A 1 HETATM 2 C C1 D5R . B . C 3 -24.237 -36.523 21.512 0.58 54.46 ? C1 D5R 402 A 1 HETATM 3 C C2 D5R . A . C 3 -23.745 -30.579 20.748 0.42 55.6 ? C2 D5R 402 A 1 HETATM 4 C C2 D5R . B . C 3 -24.196 -35.15 22.117 0.58 54.91 ? C2 D5R 402 A 1 HETATM 5 C C3 D5R . A . C 3 -22.728 -31.714 20.878 0.42 58.56 ? C3 D5R 402 A 1 HETATM 6 C C3 D5R . B . C 3 -22.755 -34.657 22.295 0.58 56.52 ? C3 D5R 402 A 1 HETATM 7 C C4 D5R . A . C 3 -23.266 -33.057 21.377 0.42 56.79 ? C4 D5R 402 A 1 HETATM 8 C C4 D5R . B . C 3 -21.661 -35.723 22.191 0.58 58.97 ? C4 D5R 402 A 1 HETATM 9 C C5 D5R . A . C 3 -24.315 -32.95 22.477 0.42 55.32 ? C5 D5R 402 A 1 HETATM 10 C C5 D5R . B . C 3 -22.124 -37.062 22.758 0.58 56.78 ? C5 D5R 402 A 1 HETATM 11 C C6 D5R . A . C 3 -25.424 -31.97 22.145 0.42 57.5 ? C6 D5R 402 A 1 HETATM 12 C C6 D5R . B . C 3 -23.377 -37.618 22.089 0.58 53.81 ? C6 D5R 402 A 1 HETATM 13 C C20 D5R . A . C 3 -23.915 -27.607 17.142 0.42 49.62 ? C20 D5R 402 A 1 HETATM 14 C C20 D5R . B . C 3 -26.417 -31.794 22.186 0.58 59.3 ? C20 D5R 402 A 1 HETATM 15 C C7 D5R . A . C 3 -23.8 -33.898 20.222 0.42 57.21 ? C7 D5R 402 A 1 HETATM 16 C C7 D5R . B . C 3 -21.159 -35.854 20.754 0.58 55.35 ? C7 D5R 402 A 1 HETATM 17 C C14 D5R . A . C 3 -22.089 -33.77 21.983 0.42 56.46 ? C14 D5R 402 A 1 HETATM 18 C C14 D5R . B . C 3 -20.461 -35.28 22.99 0.58 56 ? C14 D5R 402 A 1 HETATM 19 C C16 D5R . A . C 3 -24.398 -30.589 19.391 0.42 54.9 ? C16 D5R 402 A 1 HETATM 20 C C16 D5R . B . C 3 -24.937 -34.111 21.323 0.58 54.61 ? C16 D5R 402 A 1 HETATM 21 C C18 D5R . A . C 3 -25.509 -27.971 19.011 0.42 53.88 ? C18 D5R 402 A 1 HETATM 22 C C18 D5R . B . C 3 -24.24 -30.59 22.215 0.58 51.63 ? C18 D5R 402 A 1 HETATM 23 C C15 D5R . A . C 3 -21.991 -36.264 22.208 0.42 58.24 ? C15 D5R 402 A 1 HETATM 24 C C15 D5R . B . C 3 -18.798 -35.695 24.792 0.58 50.05 ? C15 D5R 402 A 1 HETATM 25 O O3 D5R . A . C 3 -23.94 -29.663 18.365 0.42 52.45 ? O3 D5R 402 A 1 HETATM 26 O O3 D5R . B . C 3 -24.372 -32.77 21.271 0.58 58.39 ? O3 D5R 402 A 1 HETATM 27 C C17 D5R . A . C 3 -24.785 -28.634 17.852 0.42 51.8 ? C17 D5R 402 A 1 HETATM 28 C C17 D5R . B . C 3 -25.112 -31.558 21.431 0.58 58.58 ? C17 D5R 402 A 1 HETATM 29 C C19 D5R . A . C 3 -25.792 -29.21 16.866 0.42 51.19 ? C19 D5R 402 A 1 HETATM 30 C C19 D5R . B . C 3 -25.413 -30.982 20.054 0.58 57.81 ? C19 D5R 402 A 1 HETATM 31 O O4 D5R . A . C 3 -25.026 -29.667 22.51 0.42 57.96 ? O4 D5R 402 A 1 HETATM 32 O O4 D5R . B . C 3 -24.958 -36.781 20.565 0.58 63.35 ? O4 D5R 402 A 1 HETATM 33 O O1 D5R . A . C 3 -21.48 -33.246 22.903 0.42 56.71 ? O1 D5R 402 A 1 HETATM 34 O O1 D5R . B . C 3 -19.831 -34.286 22.667 0.58 49.56 ? O1 D5R 402 A 1 HETATM 35 O O2 D5R . A . C 3 -25.302 -31.366 19.129 0.42 58.13 ? O2 D5R 402 A 1 HETATM 36 O O2 D5R . B . C 3 -25.973 -34.367 20.729 0.58 55.03 ? O2 D5R 402 A 1 HETATM 37 O O D5R . A . C 3 -21.661 -35.072 21.492 0.42 57.7 ? O D5R 402 A 1 HETATM 38 O O D5R . B . C 3 -20.027 -36.036 24.156 0.58 53.58 ? O D5R 402 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 38 #