data_8PT5
#
_model_server_result.job_id            RxJzLwbtKfwBDa-CY-HcFA 
_model_server_result.datetime_utc      '2024-11-05 00:14:22' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pt5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":403}' 
#
_entry.id    8PT5 
#
_exptl.entry_id    8PT5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PT5 
_cell.length_a            41.442 
_cell.length_b            76.836 
_cell.length_c            123.322 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PT5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NE2 HIS 129 A HIS 125 1_555 C C3 D5R . A D5R 402 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.523 ? 
covale ? covale2 A SG CYS 165 A CYS 161 1_555 C C3 D5R . A D5R 402 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.74 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 220 n n 
C1 C2 GOL sing 221 n n 
C1 H11 GOL sing 222 n n 
C1 H12 GOL sing 223 n n 
O1 HO1 GOL sing 224 n n 
C2 O2 GOL sing 225 n n 
C2 C3 GOL sing 226 n n 
C2 H2 GOL sing 227 n n 
O2 HO2 GOL sing 228 n n 
C3 O3 GOL sing 229 n n 
C3 H31 GOL sing 230 n n 
C3 H32 GOL sing 231 n n 
O3 HO3 GOL sing 232 n n 
#
_atom_sites.entry_id                     8PT5 
_atom_sites.fract_transf_matrix[1][1]    0.02413 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013015 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008109 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ANP A 1 401 401 ANP ANP . 
C 3 D5R A 1 402 502 D5R 187 . 
D 4 GOL A 1 403 601 GOL GOL . 
E 5 HOH A 1 501 45 HOH HOH . 
E 5 HOH A 2 502 15 HOH HOH . 
E 5 HOH A 3 503 56 HOH HOH . 
E 5 HOH A 4 504 65 HOH HOH . 
E 5 HOH A 5 505 66 HOH HOH . 
E 5 HOH A 6 506 37 HOH HOH . 
E 5 HOH A 7 507 10 HOH HOH . 
E 5 HOH A 8 508 35 HOH HOH . 
E 5 HOH A 9 509 70 HOH HOH . 
E 5 HOH A 10 510 34 HOH HOH . 
E 5 HOH A 11 511 39 HOH HOH . 
E 5 HOH A 12 512 23 HOH HOH . 
E 5 HOH A 13 513 41 HOH HOH . 
E 5 HOH A 14 514 22 HOH HOH . 
E 5 HOH A 15 515 42 HOH HOH . 
E 5 HOH A 16 516 60 HOH HOH . 
E 5 HOH A 17 517 86 HOH HOH . 
E 5 HOH A 18 518 53 HOH HOH . 
E 5 HOH A 19 519 12 HOH HOH . 
E 5 HOH A 20 520 6 HOH HOH . 
E 5 HOH A 21 521 16 HOH HOH . 
E 5 HOH A 22 522 27 HOH HOH . 
E 5 HOH A 23 523 38 HOH HOH . 
E 5 HOH A 24 524 18 HOH HOH . 
E 5 HOH A 25 525 50 HOH HOH . 
E 5 HOH A 26 526 77 HOH HOH . 
E 5 HOH A 27 527 59 HOH HOH . 
E 5 HOH A 28 528 55 HOH HOH . 
E 5 HOH A 29 529 61 HOH HOH . 
E 5 HOH A 30 530 1 HOH HOH . 
E 5 HOH A 31 531 82 HOH HOH . 
E 5 HOH A 32 532 24 HOH HOH . 
E 5 HOH A 33 533 57 HOH HOH . 
E 5 HOH A 34 534 31 HOH HOH . 
E 5 HOH A 35 535 47 HOH HOH . 
E 5 HOH A 36 536 5 HOH HOH . 
E 5 HOH A 37 537 74 HOH HOH . 
E 5 HOH A 38 538 9 HOH HOH . 
E 5 HOH A 39 539 51 HOH HOH . 
E 5 HOH A 40 540 40 HOH HOH . 
E 5 HOH A 41 541 69 HOH HOH . 
E 5 HOH A 42 542 33 HOH HOH . 
E 5 HOH A 43 543 58 HOH HOH . 
E 5 HOH A 44 544 71 HOH HOH . 
E 5 HOH A 45 545 44 HOH HOH . 
E 5 HOH A 46 546 21 HOH HOH . 
E 5 HOH A 47 547 54 HOH HOH . 
E 5 HOH A 48 548 20 HOH HOH . 
E 5 HOH A 49 549 13 HOH HOH . 
E 5 HOH A 50 550 30 HOH HOH . 
E 5 HOH A 51 551 83 HOH HOH . 
E 5 HOH A 52 552 19 HOH HOH . 
E 5 HOH A 53 553 7 HOH HOH . 
E 5 HOH A 54 554 32 HOH HOH . 
E 5 HOH A 55 555 17 HOH HOH . 
E 5 HOH A 56 556 49 HOH HOH . 
E 5 HOH A 57 557 26 HOH HOH . 
E 5 HOH A 58 558 8 HOH HOH . 
E 5 HOH A 59 559 4 HOH HOH . 
E 5 HOH A 60 560 2 HOH HOH . 
E 5 HOH A 61 561 29 HOH HOH . 
E 5 HOH A 62 562 14 HOH HOH . 
E 5 HOH A 63 563 46 HOH HOH . 
E 5 HOH A 64 564 79 HOH HOH . 
E 5 HOH A 65 565 52 HOH HOH . 
E 5 HOH A 66 566 72 HOH HOH . 
E 5 HOH A 67 567 68 HOH HOH . 
E 5 HOH A 68 568 3 HOH HOH . 
E 5 HOH A 69 569 43 HOH HOH . 
E 5 HOH A 70 570 28 HOH HOH . 
E 5 HOH A 71 571 25 HOH HOH . 
E 5 HOH A 72 572 85 HOH HOH . 
E 5 HOH A 73 573 11 HOH HOH . 
E 5 HOH A 74 574 67 HOH HOH . 
E 5 HOH A 75 575 48 HOH HOH . 
E 5 HOH A 76 576 78 HOH HOH . 
E 5 HOH A 77 577 62 HOH HOH . 
E 5 HOH A 78 578 76 HOH HOH . 
E 5 HOH A 79 579 64 HOH HOH . 
E 5 HOH A 80 580 81 HOH HOH . 
E 5 HOH A 81 581 63 HOH HOH . 
E 5 HOH A 82 582 73 HOH HOH . 
E 5 HOH A 83 583 80 HOH HOH . 
E 5 HOH A 84 584 84 HOH HOH . 
E 5 HOH A 85 585 36 HOH HOH . 
E 5 HOH A 86 586 75 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . D 4 -18.711 -3.216 -1.78 1 53.54 ? C1 GOL 403 A 1 
HETATM 2 O O1 GOL . . . D 4 -19.569 -3.549 -0.669 1 44.8 ? O1 GOL 403 A 1 
HETATM 3 C C2 GOL . . . D 4 -17.506 -2.295 -1.286 1 56.58 ? C2 GOL 403 A 1 
HETATM 4 O O2 GOL . . . D 4 -17.894 -1.325 -0.364 1 46.93 ? O2 GOL 403 A 1 
HETATM 5 C C3 GOL . . . D 4 -16.429 -3.263 -0.703 1 47.62 ? C3 GOL 403 A 1 
HETATM 6 O O3 GOL . . . D 4 -15.381 -2.477 -0.162 1 36.33 ? O3 GOL 403 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           19 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           304 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#