data_8PT8 # _model_server_result.job_id rJ4DvtdtoQC4IOuNJLcLsw _model_server_result.datetime_utc '2024-11-14 21:48:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":401}' # _entry.id 8PT8 # _exptl.entry_id 8PT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 606.671 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'methyl (1R,3R)-1-methyl-3-[[3-[[3-methyl-4-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]methylcarbamoyl]-4-oxidanylidene-cyclohexane-1-carboxylate' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PT8 _cell.length_a 107.72 _cell.length_b 107.72 _cell.length_c 99.085 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,H 1 1 B,E,I 2 1 C,F,G,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 118 A CYS 116 1_555 D C3 A3O . A A3O 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? covale ? covale2 B SG CYS 118 B CYS 116 1_555 E C3 A3O . B A3O 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? covale ? covale3 C SG CYS 118 C CYS 116 1_555 F C3 A3O . C A3O 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? # _chem_comp.formula 'C34 H34 N6 O5' _chem_comp.formula_weight 606.671 _chem_comp.id A3O _chem_comp.mon_nstd_flag . _chem_comp.name 'methyl (1R,3R)-1-methyl-3-[[3-[[3-methyl-4-[(4-pyridin-3-ylpyrimidin-2-yl)amino]phenyl]carbamoyl]phenyl]methylcarbamoyl]-4-oxidanylidene-cyclohexane-1-carboxylate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C7 C4 A3O sing 1 n n C6 C5 A3O sing 2 n n C6 C1 A3O sing 3 n n C5 C4 A3O sing 4 n n C4 C14 A3O sing 5 n n C4 C3 A3O sing 6 n n C1 O4 A3O doub 7 n n C1 C2 A3O sing 8 n n C14 O1 A3O doub 9 n n C14 O A3O sing 10 n n O C15 A3O sing 11 n n C3 C2 A3O sing 12 n n C2 C16 A3O sing 13 n n C16 O2 A3O doub 14 n n C16 N2 A3O sing 15 n n N2 C10 A3O sing 16 n n C43 N44 A3O doub 17 n y C43 C42 A3O sing 18 n y C18 C19 A3O doub 19 n y C18 C17 A3O sing 20 n y C19 C20 A3O sing 21 n y C10 C17 A3O sing 22 n n N44 C45 A3O sing 23 n y C17 C22 A3O doub 24 n y C42 C41 A3O doub 25 n y C20 C21 A3O doub 26 n y C22 C21 A3O sing 27 n y C21 C23 A3O sing 28 n n C45 C40 A3O doub 29 n y C41 C40 A3O sing 30 n y C23 O24 A3O doub 31 n n C23 N25 A3O sing 32 n n C40 C37 A3O sing 33 n n N25 C26 A3O sing 34 n n C27 C26 A3O doub 35 n y C27 C28 A3O sing 36 n y C26 C31 A3O sing 37 n y C39 C28 A3O sing 38 n n C37 N38 A3O doub 39 n y C37 C36 A3O sing 40 n y C28 C29 A3O doub 41 n y N38 C33 A3O sing 42 n y C31 C30 A3O doub 43 n y C36 C35 A3O doub 44 n y C29 C30 A3O sing 45 n y C29 N32 A3O sing 46 n n C33 N32 A3O sing 47 n n C33 N34 A3O doub 48 n y C35 N34 A3O sing 49 n y C2 H1 A3O sing 50 n n C5 H2 A3O sing 51 n n C5 H3 A3O sing 52 n n C6 H4 A3O sing 53 n n C6 H5 A3O sing 54 n n C18 H6 A3O sing 55 n n C19 H7 A3O sing 56 n n C20 H8 A3O sing 57 n n C27 H9 A3O sing 58 n n C7 H10 A3O sing 59 n n C7 H11 A3O sing 60 n n C7 H12 A3O sing 61 n n C15 H13 A3O sing 62 n n C15 H14 A3O sing 63 n n C15 H15 A3O sing 64 n n C10 H16 A3O sing 65 n n C10 H17 A3O sing 66 n n C22 H18 A3O sing 67 n n C30 H19 A3O sing 68 n n C31 H20 A3O sing 69 n n C35 H21 A3O sing 70 n n C36 H22 A3O sing 71 n n C39 H23 A3O sing 72 n n C39 H24 A3O sing 73 n n C39 H25 A3O sing 74 n n C41 H26 A3O sing 75 n n C42 H27 A3O sing 76 n n C43 H28 A3O sing 77 n n C45 H29 A3O sing 78 n n C3 H30 A3O sing 79 n n C3 H31 A3O sing 80 n n N2 H32 A3O sing 81 n n N25 H33 A3O sing 82 n n N32 H34 A3O sing 83 n n # _atom_sites.entry_id 8PT8 _atom_sites.fract_transf_matrix[1][1] 0.009283 _atom_sites.fract_transf_matrix[1][2] 0.00536 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 A3O A 1 401 401 A3O 35R . E 2 A3O B 1 401 401 A3O 35R . F 2 A3O C 1 401 401 A3O 35R . G 3 GOL C 1 402 101 GOL GOL . H 4 HOH A 1 501 1 HOH HOH . I 4 HOH B 1 501 3 HOH HOH . I 4 HOH B 2 502 4 HOH HOH . J 4 HOH C 1 501 5 HOH HOH . J 4 HOH C 2 502 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 A3O . . . E 2 -8.125 -64.626 -9.178 1 108.07 ? O1 A3O 401 B 1 HETATM 2 C C2 A3O . . . E 2 -3.474 -64.141 -8.374 1 106.54 ? C2 A3O 401 B 1 HETATM 3 C C4 A3O . . . E 2 -5.821 -64.113 -9.281 1 103.83 ? C4 A3O 401 B 1 HETATM 4 C C5 A3O . . . E 2 -5.697 -65.615 -9.251 1 105.45 ? C5 A3O 401 B 1 HETATM 5 C C6 A3O . . . E 2 -4.398 -66.117 -9.808 1 107.8 ? C6 A3O 401 B 1 HETATM 6 C C14 A3O . . . E 2 -7.272 -63.78 -9.115 1 106.41 ? C14 A3O 401 B 1 HETATM 7 C C16 A3O . . . E 2 -2.94 -64.678 -7.083 1 114.68 ? C16 A3O 401 B 1 HETATM 8 C C17 A3O . . . E 2 -2.784 -67.286 -5.297 1 94.04 ? C17 A3O 401 B 1 HETATM 9 C C18 A3O . . . E 2 -2.86 -68.652 -5.19 1 94.69 ? C18 A3O 401 B 1 HETATM 10 C C19 A3O . . . E 2 -1.825 -69.356 -4.625 1 95.87 ? C19 A3O 401 B 1 HETATM 11 C C20 A3O . . . E 2 -0.715 -68.681 -4.178 1 96.85 ? C20 A3O 401 B 1 HETATM 12 C C23 A3O . . . E 2 0.582 -66.635 -3.763 1 98.82 ? C23 A3O 401 B 1 HETATM 13 C C26 A3O . . . E 2 1.632 -65.089 -2.381 1 90.78 ? C26 A3O 401 B 1 HETATM 14 C C27 A3O . . . E 2 2.035 -63.775 -2.365 1 85.14 ? C27 A3O 401 B 1 HETATM 15 C C28 A3O . . . E 2 3.131 -63.366 -1.638 1 82.19 ? C28 A3O 401 B 1 HETATM 16 C C29 A3O . . . E 2 3.849 -64.244 -0.905 1 84.88 ? C29 A3O 401 B 1 HETATM 17 C C7 A3O . . . E 2 -5.51 -63.556 -10.635 1 105.99 ? C7 A3O 401 B 1 HETATM 18 C C15 A3O . . . E 2 -9.122 -62.156 -8.992 1 95.58 ? C15 A3O 401 B 1 HETATM 19 C C10 A3O . . . E 2 -3.953 -66.604 -5.929 1 96.62 ? C10 A3O 401 B 1 HETATM 20 C C21 A3O . . . E 2 -0.642 -67.309 -4.282 1 97.44 ? C21 A3O 401 B 1 HETATM 21 C C22 A3O . . . E 2 -1.679 -66.602 -4.848 1 95.78 ? C22 A3O 401 B 1 HETATM 22 C C30 A3O . . . E 2 3.456 -65.552 -0.891 1 93.15 ? C30 A3O 401 B 1 HETATM 23 C C31 A3O . . . E 2 2.362 -65.977 -1.624 1 89.57 ? C31 A3O 401 B 1 HETATM 24 C C33 A3O . . . E 2 5.908 -63.15 -0.691 1 85.7 ? C33 A3O 401 B 1 HETATM 25 C C35 A3O . . . E 2 7.46 -61.465 -0.444 1 83.05 ? C35 A3O 401 B 1 HETATM 26 C C36 A3O . . . E 2 7.905 -61.686 -1.709 1 87.17 ? C36 A3O 401 B 1 HETATM 27 C C37 A3O . . . E 2 7.312 -62.667 -2.46 1 93.41 ? C37 A3O 401 B 1 HETATM 28 C C39 A3O . . . E 2 3.532 -61.934 -1.657 1 89.76 ? C39 A3O 401 B 1 HETATM 29 C C1 A3O . . . E 2 -3.295 -65.241 -9.345 1 109.12 ? C1 A3O 401 B 1 HETATM 30 C C40 A3O . . . E 2 7.78 -62.905 -3.85 1 96.79 ? C40 A3O 401 B 1 HETATM 31 C C41 A3O . . . E 2 8.92 -62.288 -4.309 1 94.94 ? C41 A3O 401 B 1 HETATM 32 C C42 A3O . . . E 2 9.355 -62.507 -5.597 1 90.35 ? C42 A3O 401 B 1 HETATM 33 C C43 A3O . . . E 2 8.639 -63.336 -6.414 1 88.34 ? C43 A3O 401 B 1 HETATM 34 C C45 A3O . . . E 2 7.1 -63.726 -4.716 1 95.32 ? C45 A3O 401 B 1 HETATM 35 C C3 A3O . . . E 2 -4.853 -63.491 -8.285 1 111.8 ? C3 A3O 401 B 1 HETATM 36 N N2 A3O . . . E 2 -3.776 -65.203 -6.208 1 100.05 ? N2 A3O 401 B 1 HETATM 37 N N25 A3O . . . E 2 0.549 -65.493 -3.094 1 92.94 ? N25 A3O 401 B 1 HETATM 38 N N32 A3O . . . E 2 4.91 -63.879 -0.18 1 92.5 ? N32 A3O 401 B 1 HETATM 39 N N34 A3O . . . E 2 6.474 -62.197 0.031 1 86.95 ? N34 A3O 401 B 1 HETATM 40 N N38 A3O . . . E 2 6.319 -63.38 -1.928 1 95.04 ? N38 A3O 401 B 1 HETATM 41 N N44 A3O . . . E 2 7.546 -63.916 -5.954 1 95.32 ? N44 A3O 401 B 1 HETATM 42 O O2 A3O . . . E 2 -1.746 -64.65 -6.903 1 106.53 ? O2 A3O 401 B 1 HETATM 43 O O A3O . . . E 2 -7.729 -62.432 -8.956 1 104.48 ? O A3O 401 B 1 HETATM 44 O O4 A3O . . . E 2 -2.173 -65.457 -9.709 1 113.11 ? O4 A3O 401 B 1 HETATM 45 O O24 A3O . . . E 2 1.62 -67.208 -3.945 1 107.81 ? O24 A3O 401 B 1 # _model_server_stats.io_time_ms 29 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 394 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 45 #