data_8PT8 # _model_server_result.job_id u7GXQQUq7KgdX46CrIp_zA _model_server_result.datetime_utc '2024-11-14 21:54:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":402}' # _entry.id 8PT8 # _exptl.entry_id 8PT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PT8 _cell.length_a 107.72 _cell.length_b 107.72 _cell.length_c 99.085 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 144 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,H 1 1 B,E,I 2 1 C,F,G,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 118 A CYS 116 1_555 D C3 A3O . A A3O 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.734 ? covale ? covale2 B SG CYS 118 B CYS 116 1_555 E C3 A3O . B A3O 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? covale ? covale3 C SG CYS 118 C CYS 116 1_555 F C3 A3O . C A3O 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 212 n n C1 C2 GOL sing 213 n n C1 H11 GOL sing 214 n n C1 H12 GOL sing 215 n n O1 HO1 GOL sing 216 n n C2 O2 GOL sing 217 n n C2 C3 GOL sing 218 n n C2 H2 GOL sing 219 n n O2 HO2 GOL sing 220 n n C3 O3 GOL sing 221 n n C3 H31 GOL sing 222 n n C3 H32 GOL sing 223 n n O3 HO3 GOL sing 224 n n # _atom_sites.entry_id 8PT8 _atom_sites.fract_transf_matrix[1][1] 0.009283 _atom_sites.fract_transf_matrix[1][2] 0.00536 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010719 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010092 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 A3O A 1 401 401 A3O 35R . E 2 A3O B 1 401 401 A3O 35R . F 2 A3O C 1 401 401 A3O 35R . G 3 GOL C 1 402 101 GOL GOL . H 4 HOH A 1 501 1 HOH HOH . I 4 HOH B 1 501 3 HOH HOH . I 4 HOH B 2 502 4 HOH HOH . J 4 HOH C 1 501 5 HOH HOH . J 4 HOH C 2 502 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 3 32.312 -2.325 2.924 1 57.14 ? C1 GOL 402 C 1 HETATM 2 O O1 GOL . . . G 3 30.897 -2.25 2.794 1 56.9 ? O1 GOL 402 C 1 HETATM 3 C C2 GOL . . . G 3 32.969 -1.032 2.499 1 63.84 ? C2 GOL 402 C 1 HETATM 4 O O2 GOL . . . G 3 32.127 0.064 2.85 1 57.44 ? O2 GOL 402 C 1 HETATM 5 C C3 GOL . . . G 3 34.338 -0.839 3.113 1 69.14 ? C3 GOL 402 C 1 HETATM 6 O O3 GOL . . . G 3 35.106 0.119 2.391 1 74.88 ? O3 GOL 402 C 1 HETATM 7 H H11 GOL . . . G 3 32.654 -3.063 2.365 1 67.63 ? H11 GOL 402 C 1 HETATM 8 H H12 GOL . . . G 3 32.545 -2.512 3.864 1 67.63 ? H12 GOL 402 C 1 HETATM 9 H HO1 GOL . . . G 3 30.71 -1.497 2.459 1 67.34 ? HO1 GOL 402 C 1 HETATM 10 H H2 GOL . . . G 3 33.071 -1.046 1.519 1 75.67 ? H2 GOL 402 C 1 HETATM 11 H HO2 GOL . . . G 3 31.924 -0.027 3.667 1 67.99 ? HO2 GOL 402 C 1 HETATM 12 H H31 GOL . . . G 3 34.814 -1.704 3.117 1 82.03 ? H31 GOL 402 C 1 HETATM 13 H H32 GOL . . . G 3 34.233 -0.538 4.047 1 82.03 ? H32 GOL 402 C 1 HETATM 14 H HO3 GOL . . . G 3 35.863 0.187 2.763 1 88.92 ? HO3 GOL 402 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 15 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 14 #