data_8PTD # _model_server_result.job_id tdyJo_FTfh9cCi4kWt0MEA _model_server_result.datetime_utc '2024-10-10 11:25:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ptd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8PTD # _exptl.entry_id 8PTD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 17.007 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HYDROXIDE ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PTD _cell.length_a 52.471 _cell.length_b 147.665 _cell.length_c 116.043 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PTD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O34 B12 . A B12 402 1_555 F NA NA . A NA 405 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc2 F NA NA . A NA 405 1_555 H O HOH . A HOH 634 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc3 G NA NA . A NA 406 1_555 H O HOH . A HOH 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.088 ? # _chem_comp.formula 'H O -1' _chem_comp.formula_weight 17.007 _chem_comp.id OH _chem_comp.mon_nstd_flag . _chem_comp.name 'HYDROXIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _chem_comp_bond.atom_id_1 O _chem_comp_bond.atom_id_2 HO _chem_comp_bond.comp_id OH _chem_comp_bond.value_order sing _chem_comp_bond.pdbx_ordinal 440 _chem_comp_bond.pdbx_stereo_config n _chem_comp_bond.pdbx_aromatic_flag n # _atom_sites.entry_id 8PTD _atom_sites.fract_transf_matrix[1][1] 0.019058 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006772 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008617 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 406 GOL GOL . C 3 B12 A 1 402 411 B12 B12 . D 4 OH A 1 403 412 OH OH . E 2 GOL A 1 404 413 GOL GOL . F 5 NA A 1 405 1 NA NA . G 5 NA A 1 406 2 NA NA . H 6 HOH A 1 501 281 HOH HOH . H 6 HOH A 2 502 159 HOH HOH . H 6 HOH A 3 503 292 HOH HOH . H 6 HOH A 4 504 123 HOH HOH . H 6 HOH A 5 505 228 HOH HOH . H 6 HOH A 6 506 143 HOH HOH . H 6 HOH A 7 507 279 HOH HOH . H 6 HOH A 8 508 185 HOH HOH . H 6 HOH A 9 509 210 HOH HOH . H 6 HOH A 10 510 133 HOH HOH . H 6 HOH A 11 511 196 HOH HOH . H 6 HOH A 12 512 13 HOH HOH . H 6 HOH A 13 513 25 HOH HOH . H 6 HOH A 14 514 124 HOH HOH . H 6 HOH A 15 515 43 HOH HOH . H 6 HOH A 16 516 144 HOH HOH . H 6 HOH A 17 517 202 HOH HOH . H 6 HOH A 18 518 82 HOH HOH . H 6 HOH A 19 519 121 HOH HOH . H 6 HOH A 20 520 71 HOH HOH . H 6 HOH A 21 521 114 HOH HOH . H 6 HOH A 22 522 8 HOH HOH . H 6 HOH A 23 523 90 HOH HOH . H 6 HOH A 24 524 99 HOH HOH . H 6 HOH A 25 525 146 HOH HOH . H 6 HOH A 26 526 68 HOH HOH . H 6 HOH A 27 527 12 HOH HOH . H 6 HOH A 28 528 207 HOH HOH . H 6 HOH A 29 529 101 HOH HOH . H 6 HOH A 30 530 92 HOH HOH . H 6 HOH A 31 531 21 HOH HOH . H 6 HOH A 32 532 79 HOH HOH . H 6 HOH A 33 533 117 HOH HOH . H 6 HOH A 34 534 9 HOH HOH . H 6 HOH A 35 535 199 HOH HOH . H 6 HOH A 36 536 64 HOH HOH . H 6 HOH A 37 537 83 HOH HOH . H 6 HOH A 38 538 22 HOH HOH . H 6 HOH A 39 539 205 HOH HOH . H 6 HOH A 40 540 39 HOH HOH . H 6 HOH A 41 541 113 HOH HOH . H 6 HOH A 42 542 263 HOH HOH . H 6 HOH A 43 543 224 HOH HOH . H 6 HOH A 44 544 233 HOH HOH . H 6 HOH A 45 545 175 HOH HOH . H 6 HOH A 46 546 234 HOH HOH . H 6 HOH A 47 547 118 HOH HOH . H 6 HOH A 48 548 201 HOH HOH . H 6 HOH A 49 549 40 HOH HOH . H 6 HOH A 50 550 46 HOH HOH . H 6 HOH A 51 551 142 HOH HOH . H 6 HOH A 52 552 16 HOH HOH . H 6 HOH A 53 553 136 HOH HOH . H 6 HOH A 54 554 132 HOH HOH . H 6 HOH A 55 555 67 HOH HOH . H 6 HOH A 56 556 63 HOH HOH . H 6 HOH A 57 557 259 HOH HOH . H 6 HOH A 58 558 57 HOH HOH . H 6 HOH A 59 559 271 HOH HOH . H 6 HOH A 60 560 104 HOH HOH . H 6 HOH A 61 561 260 HOH HOH . H 6 HOH A 62 562 156 HOH HOH . H 6 HOH A 63 563 6 HOH HOH . H 6 HOH A 64 564 102 HOH HOH . H 6 HOH A 65 565 183 HOH HOH . H 6 HOH A 66 566 227 HOH HOH . H 6 HOH A 67 567 15 HOH HOH . H 6 HOH A 68 568 173 HOH HOH . H 6 HOH A 69 569 243 HOH HOH . H 6 HOH A 70 570 27 HOH HOH . H 6 HOH A 71 571 97 HOH HOH . H 6 HOH A 72 572 19 HOH HOH . H 6 HOH A 73 573 24 HOH HOH . H 6 HOH A 74 574 41 HOH HOH . H 6 HOH A 75 575 11 HOH HOH . H 6 HOH A 76 576 265 HOH HOH . H 6 HOH A 77 577 116 HOH HOH . H 6 HOH A 78 578 87 HOH HOH . H 6 HOH A 79 579 127 HOH HOH . H 6 HOH A 80 580 235 HOH HOH . H 6 HOH A 81 581 109 HOH HOH . H 6 HOH A 82 582 119 HOH HOH . H 6 HOH A 83 583 94 HOH HOH . H 6 HOH A 84 584 26 HOH HOH . H 6 HOH A 85 585 155 HOH HOH . H 6 HOH A 86 586 54 HOH HOH . H 6 HOH A 87 587 53 HOH HOH . H 6 HOH A 88 588 229 HOH HOH . H 6 HOH A 89 589 59 HOH HOH . H 6 HOH A 90 590 29 HOH HOH . H 6 HOH A 91 591 103 HOH HOH . H 6 HOH A 92 592 70 HOH HOH . H 6 HOH A 93 593 62 HOH HOH . H 6 HOH A 94 594 138 HOH HOH . H 6 HOH A 95 595 18 HOH HOH . H 6 HOH A 96 596 242 HOH HOH . H 6 HOH A 97 597 232 HOH HOH . H 6 HOH A 98 598 49 HOH HOH . H 6 HOH A 99 599 126 HOH HOH . H 6 HOH A 100 600 163 HOH HOH . H 6 HOH A 101 601 151 HOH HOH . H 6 HOH A 102 602 84 HOH HOH . H 6 HOH A 103 603 56 HOH HOH . H 6 HOH A 104 604 42 HOH HOH . H 6 HOH A 105 605 187 HOH HOH . H 6 HOH A 106 606 120 HOH HOH . H 6 HOH A 107 607 52 HOH HOH . H 6 HOH A 108 608 10 HOH HOH . H 6 HOH A 109 609 284 HOH HOH . H 6 HOH A 110 610 276 HOH HOH . H 6 HOH A 111 611 32 HOH HOH . H 6 HOH A 112 612 200 HOH HOH . H 6 HOH A 113 613 65 HOH HOH . H 6 HOH A 114 614 86 HOH HOH . H 6 HOH A 115 615 96 HOH HOH . H 6 HOH A 116 616 216 HOH HOH . H 6 HOH A 117 617 211 HOH HOH . H 6 HOH A 118 618 193 HOH HOH . H 6 HOH A 119 619 72 HOH HOH . H 6 HOH A 120 620 148 HOH HOH . H 6 HOH A 121 621 182 HOH HOH . H 6 HOH A 122 622 128 HOH HOH . H 6 HOH A 123 623 213 HOH HOH . H 6 HOH A 124 624 23 HOH HOH . H 6 HOH A 125 625 269 HOH HOH . H 6 HOH A 126 626 267 HOH HOH . H 6 HOH A 127 627 55 HOH HOH . H 6 HOH A 128 628 160 HOH HOH . H 6 HOH A 129 629 230 HOH HOH . H 6 HOH A 130 630 36 HOH HOH . H 6 HOH A 131 631 122 HOH HOH . H 6 HOH A 132 632 184 HOH HOH . H 6 HOH A 133 633 282 HOH HOH . H 6 HOH A 134 634 285 HOH HOH . H 6 HOH A 135 635 7 HOH HOH . H 6 HOH A 136 636 93 HOH HOH . H 6 HOH A 137 637 88 HOH HOH . H 6 HOH A 138 638 275 HOH HOH . H 6 HOH A 139 639 28 HOH HOH . H 6 HOH A 140 640 157 HOH HOH . H 6 HOH A 141 641 37 HOH HOH . H 6 HOH A 142 642 170 HOH HOH . H 6 HOH A 143 643 168 HOH HOH . H 6 HOH A 144 644 261 HOH HOH . H 6 HOH A 145 645 140 HOH HOH . H 6 HOH A 146 646 287 HOH HOH . H 6 HOH A 147 647 98 HOH HOH . H 6 HOH A 148 648 278 HOH HOH . H 6 HOH A 149 649 147 HOH HOH . H 6 HOH A 150 650 105 HOH HOH . H 6 HOH A 151 651 174 HOH HOH . H 6 HOH A 152 652 250 HOH HOH . H 6 HOH A 153 653 38 HOH HOH . H 6 HOH A 154 654 221 HOH HOH . H 6 HOH A 155 655 266 HOH HOH . H 6 HOH A 156 656 47 HOH HOH . H 6 HOH A 157 657 33 HOH HOH . H 6 HOH A 158 658 107 HOH HOH . H 6 HOH A 159 659 218 HOH HOH . H 6 HOH A 160 660 76 HOH HOH . H 6 HOH A 161 661 112 HOH HOH . H 6 HOH A 162 662 212 HOH HOH . H 6 HOH A 163 663 270 HOH HOH . H 6 HOH A 164 664 81 HOH HOH . H 6 HOH A 165 665 100 HOH HOH . H 6 HOH A 166 666 134 HOH HOH . H 6 HOH A 167 667 262 HOH HOH . H 6 HOH A 168 668 74 HOH HOH . H 6 HOH A 169 669 152 HOH HOH . H 6 HOH A 170 670 209 HOH HOH . H 6 HOH A 171 671 189 HOH HOH . H 6 HOH A 172 672 167 HOH HOH . H 6 HOH A 173 673 225 HOH HOH . H 6 HOH A 174 674 31 HOH HOH . H 6 HOH A 175 675 274 HOH HOH . H 6 HOH A 176 676 130 HOH HOH . H 6 HOH A 177 677 58 HOH HOH . H 6 HOH A 178 678 60 HOH HOH . H 6 HOH A 179 679 178 HOH HOH . H 6 HOH A 180 680 226 HOH HOH . H 6 HOH A 181 681 115 HOH HOH . H 6 HOH A 182 682 214 HOH HOH . H 6 HOH A 183 683 150 HOH HOH . H 6 HOH A 184 684 77 HOH HOH . H 6 HOH A 185 685 220 HOH HOH . H 6 HOH A 186 686 283 HOH HOH . H 6 HOH A 187 687 239 HOH HOH . H 6 HOH A 188 688 272 HOH HOH . H 6 HOH A 189 689 153 HOH HOH . H 6 HOH A 190 690 165 HOH HOH . H 6 HOH A 191 691 80 HOH HOH . H 6 HOH A 192 692 66 HOH HOH . H 6 HOH A 193 693 198 HOH HOH . H 6 HOH A 194 694 171 HOH HOH . H 6 HOH A 195 695 172 HOH HOH . H 6 HOH A 196 696 135 HOH HOH . H 6 HOH A 197 697 30 HOH HOH . H 6 HOH A 198 698 45 HOH HOH . H 6 HOH A 199 699 14 HOH HOH . H 6 HOH A 200 700 51 HOH HOH . H 6 HOH A 201 701 108 HOH HOH . H 6 HOH A 202 702 264 HOH HOH . H 6 HOH A 203 703 20 HOH HOH . H 6 HOH A 204 704 180 HOH HOH . H 6 HOH A 205 705 139 HOH HOH . H 6 HOH A 206 706 73 HOH HOH . H 6 HOH A 207 707 34 HOH HOH . H 6 HOH A 208 708 85 HOH HOH . H 6 HOH A 209 709 280 HOH HOH . H 6 HOH A 210 710 95 HOH HOH . H 6 HOH A 211 711 125 HOH HOH . H 6 HOH A 212 712 78 HOH HOH . H 6 HOH A 213 713 192 HOH HOH . H 6 HOH A 214 714 217 HOH HOH . H 6 HOH A 215 715 288 HOH HOH . H 6 HOH A 216 716 257 HOH HOH . H 6 HOH A 217 717 286 HOH HOH . H 6 HOH A 218 718 237 HOH HOH . H 6 HOH A 219 719 91 HOH HOH . H 6 HOH A 220 720 223 HOH HOH . H 6 HOH A 221 721 203 HOH HOH . H 6 HOH A 222 722 149 HOH HOH . H 6 HOH A 223 723 141 HOH HOH . H 6 HOH A 224 724 176 HOH HOH . H 6 HOH A 225 725 277 HOH HOH . H 6 HOH A 226 726 177 HOH HOH . H 6 HOH A 227 727 166 HOH HOH . H 6 HOH A 228 728 188 HOH HOH . H 6 HOH A 229 729 289 HOH HOH . H 6 HOH A 230 730 254 HOH HOH . H 6 HOH A 231 731 290 HOH HOH . H 6 HOH A 232 732 206 HOH HOH . H 6 HOH A 233 733 169 HOH HOH . H 6 HOH A 234 734 186 HOH HOH . H 6 HOH A 235 735 231 HOH HOH . H 6 HOH A 236 736 110 HOH HOH . H 6 HOH A 237 737 129 HOH HOH . H 6 HOH A 238 738 268 HOH HOH . H 6 HOH A 239 739 251 HOH HOH . H 6 HOH A 240 740 246 HOH HOH . H 6 HOH A 241 741 75 HOH HOH . H 6 HOH A 242 742 245 HOH HOH . H 6 HOH A 243 743 255 HOH HOH . H 6 HOH A 244 744 248 HOH HOH . H 6 HOH A 245 745 238 HOH HOH . H 6 HOH A 246 746 291 HOH HOH . H 6 HOH A 247 747 204 HOH HOH . H 6 HOH A 248 748 162 HOH HOH . H 6 HOH A 249 749 219 HOH HOH . H 6 HOH A 250 750 273 HOH HOH . H 6 HOH A 251 751 190 HOH HOH . H 6 HOH A 252 752 253 HOH HOH . H 6 HOH A 253 753 236 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O OH . . . D 4 -9.71 -8.676 -7.355 1 40.46 ? O OH 403 A 1 HETATM 2 H HO OH . . . D 4 -9.003 -8.681 -6.705 1 48.55 ? HO OH 403 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 15 _model_server_stats.element_count 2 #