data_8PTF
#
_model_server_result.job_id            WmZ6mYiolabK_Sc2DWpZRQ 
_model_server_result.datetime_utc      '2024-10-10 11:25:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ptf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":407}' 
#
_entry.id    8PTF 
#
_exptl.entry_id    8PTF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PTF 
_cell.length_a            52.724 
_cell.length_b            145.391 
_cell.length_c            116.382 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PTF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 H N N 
? 4 I N N 
? 4 J N N 
? 4 K N N 
? 4 L N N 
? 4 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OH TYR 15 A TYR 36 1_555 H NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.873 ? 
metalc ? metalc2 A OH TYR 43 A TYR 64 1_555 H NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.517 ? 
metalc ? metalc3 A O PHE 81 A PHE 102 1_555 H NA NA . A NA 407 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? 
metalc ? metalc4 A OD2 ASP 143 A ASP 164 1_555 L NA NA . A NA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.106 ? 
metalc ? metalc5 A OD1 ASP 160 A ASP 181 1_555 J NA NA . A NA 409 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.709 ? 
metalc ? metalc6 A O ILE 193 A ILE 214 1_555 L NA NA . A NA 411 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.657 ? 
metalc ? metalc7 A O ARG 206 A ARG 227 1_555 K NA NA . A NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.77 ? 
metalc ? metalc8 A O ASP 209 A ASP 230 1_555 K NA NA . A NA 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc9 A O VAL 306 A VAL 327 1_555 I NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.543 ? 
metalc ? metalc10 A OD1 ASN 329 A ASN 350 1_555 I NA NA . A NA 408 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.927 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8PTF 
_atom_sites.fract_transf_matrix[1][1]    0.018967 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006878 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008592 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CBY A 1 401 403 CBY CBY . 
C 3 3P8 A 1 402 404 3P8 CYN . 
D 3 3P8 A 1 403 406 3P8 CYN . 
E 3 3P8 A 1 404 407 3P8 CYN . 
F 3 3P8 A 1 405 408 3P8 CYN . 
G 3 3P8 A 1 406 409 3P8 CYN . 
H 4 NA A 1 407 1 NA NA . 
I 4 NA A 1 408 2 NA NA . 
J 4 NA A 1 409 3 NA NA . 
K 4 NA A 1 410 4 NA NA . 
L 4 NA A 1 411 5 NA NA . 
M 4 NA A 1 412 6 NA NA . 
N 5 HOH A 1 501 51 HOH HOH . 
N 5 HOH A 2 502 67 HOH HOH . 
N 5 HOH A 3 503 119 HOH HOH . 
N 5 HOH A 4 504 74 HOH HOH . 
N 5 HOH A 5 505 22 HOH HOH . 
N 5 HOH A 6 506 60 HOH HOH . 
N 5 HOH A 7 507 121 HOH HOH . 
N 5 HOH A 8 508 111 HOH HOH . 
N 5 HOH A 9 509 8 HOH HOH . 
N 5 HOH A 10 510 35 HOH HOH . 
N 5 HOH A 11 511 73 HOH HOH . 
N 5 HOH A 12 512 62 HOH HOH . 
N 5 HOH A 13 513 20 HOH HOH . 
N 5 HOH A 14 514 63 HOH HOH . 
N 5 HOH A 15 515 3 HOH HOH . 
N 5 HOH A 16 516 36 HOH HOH . 
N 5 HOH A 17 517 69 HOH HOH . 
N 5 HOH A 18 518 24 HOH HOH . 
N 5 HOH A 19 519 54 HOH HOH . 
N 5 HOH A 20 520 57 HOH HOH . 
N 5 HOH A 21 521 90 HOH HOH . 
N 5 HOH A 22 522 44 HOH HOH . 
N 5 HOH A 23 523 70 HOH HOH . 
N 5 HOH A 24 524 68 HOH HOH . 
N 5 HOH A 25 525 19 HOH HOH . 
N 5 HOH A 26 526 100 HOH HOH . 
N 5 HOH A 27 527 27 HOH HOH . 
N 5 HOH A 28 528 38 HOH HOH . 
N 5 HOH A 29 529 59 HOH HOH . 
N 5 HOH A 30 530 61 HOH HOH . 
N 5 HOH A 31 531 13 HOH HOH . 
N 5 HOH A 32 532 94 HOH HOH . 
N 5 HOH A 33 533 30 HOH HOH . 
N 5 HOH A 34 534 81 HOH HOH . 
N 5 HOH A 35 535 45 HOH HOH . 
N 5 HOH A 36 536 37 HOH HOH . 
N 5 HOH A 37 537 29 HOH HOH . 
N 5 HOH A 38 538 48 HOH HOH . 
N 5 HOH A 39 539 10 HOH HOH . 
N 5 HOH A 40 540 42 HOH HOH . 
N 5 HOH A 41 541 43 HOH HOH . 
N 5 HOH A 42 542 9 HOH HOH . 
N 5 HOH A 43 543 16 HOH HOH . 
N 5 HOH A 44 544 11 HOH HOH . 
N 5 HOH A 45 545 84 HOH HOH . 
N 5 HOH A 46 546 122 HOH HOH . 
N 5 HOH A 47 547 93 HOH HOH . 
N 5 HOH A 48 548 34 HOH HOH . 
N 5 HOH A 49 549 55 HOH HOH . 
N 5 HOH A 50 550 78 HOH HOH . 
N 5 HOH A 51 551 124 HOH HOH . 
N 5 HOH A 52 552 21 HOH HOH . 
N 5 HOH A 53 553 33 HOH HOH . 
N 5 HOH A 54 554 46 HOH HOH . 
N 5 HOH A 55 555 92 HOH HOH . 
N 5 HOH A 56 556 71 HOH HOH . 
N 5 HOH A 57 557 15 HOH HOH . 
N 5 HOH A 58 558 47 HOH HOH . 
N 5 HOH A 59 559 28 HOH HOH . 
N 5 HOH A 60 560 58 HOH HOH . 
N 5 HOH A 61 561 39 HOH HOH . 
N 5 HOH A 62 562 103 HOH HOH . 
N 5 HOH A 63 563 126 HOH HOH . 
N 5 HOH A 64 564 50 HOH HOH . 
N 5 HOH A 65 565 88 HOH HOH . 
N 5 HOH A 66 566 1 HOH HOH . 
N 5 HOH A 67 567 12 HOH HOH . 
N 5 HOH A 68 568 41 HOH HOH . 
N 5 HOH A 69 569 82 HOH HOH . 
N 5 HOH A 70 570 7 HOH HOH . 
N 5 HOH A 71 571 137 HOH HOH . 
N 5 HOH A 72 572 102 HOH HOH . 
N 5 HOH A 73 573 101 HOH HOH . 
N 5 HOH A 74 574 79 HOH HOH . 
N 5 HOH A 75 575 106 HOH HOH . 
N 5 HOH A 76 576 130 HOH HOH . 
N 5 HOH A 77 577 133 HOH HOH . 
N 5 HOH A 78 578 112 HOH HOH . 
N 5 HOH A 79 579 80 HOH HOH . 
N 5 HOH A 80 580 138 HOH HOH . 
N 5 HOH A 81 581 97 HOH HOH . 
N 5 HOH A 82 582 2 HOH HOH . 
N 5 HOH A 83 583 76 HOH HOH . 
N 5 HOH A 84 584 66 HOH HOH . 
N 5 HOH A 85 585 23 HOH HOH . 
N 5 HOH A 86 586 85 HOH HOH . 
N 5 HOH A 87 587 65 HOH HOH . 
N 5 HOH A 88 588 31 HOH HOH . 
N 5 HOH A 89 589 17 HOH HOH . 
N 5 HOH A 90 590 18 HOH HOH . 
N 5 HOH A 91 591 104 HOH HOH . 
N 5 HOH A 92 592 118 HOH HOH . 
N 5 HOH A 93 593 136 HOH HOH . 
N 5 HOH A 94 594 108 HOH HOH . 
N 5 HOH A 95 595 114 HOH HOH . 
N 5 HOH A 96 596 116 HOH HOH . 
N 5 HOH A 97 597 32 HOH HOH . 
N 5 HOH A 98 598 64 HOH HOH . 
N 5 HOH A 99 599 53 HOH HOH . 
N 5 HOH A 100 600 87 HOH HOH . 
N 5 HOH A 101 601 134 HOH HOH . 
N 5 HOH A 102 602 56 HOH HOH . 
N 5 HOH A 103 603 40 HOH HOH . 
N 5 HOH A 104 604 128 HOH HOH . 
N 5 HOH A 105 605 96 HOH HOH . 
N 5 HOH A 106 606 120 HOH HOH . 
N 5 HOH A 107 607 132 HOH HOH . 
N 5 HOH A 108 608 25 HOH HOH . 
N 5 HOH A 109 609 83 HOH HOH . 
N 5 HOH A 110 610 117 HOH HOH . 
N 5 HOH A 111 611 52 HOH HOH . 
N 5 HOH A 112 612 127 HOH HOH . 
N 5 HOH A 113 613 109 HOH HOH . 
N 5 HOH A 114 614 123 HOH HOH . 
N 5 HOH A 115 615 49 HOH HOH . 
N 5 HOH A 116 616 86 HOH HOH . 
N 5 HOH A 117 617 95 HOH HOH . 
N 5 HOH A 118 618 91 HOH HOH . 
N 5 HOH A 119 619 99 HOH HOH . 
N 5 HOH A 120 620 89 HOH HOH . 
N 5 HOH A 121 621 105 HOH HOH . 
N 5 HOH A 122 622 77 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         H 
_atom_site.label_entity_id       4 
_atom_site.Cartn_x               -4.587 
_atom_site.Cartn_y               -30.144 
_atom_site.Cartn_z               10.174 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        40.34 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           407 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           273 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           1 
#