data_8PTK # _model_server_result.job_id hojm5uUMUkPpn63HNYoeSQ _model_server_result.datetime_utc '2025-09-08 06:31:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ptk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"GC","auth_seq_id":4702}' # _entry.id 8PTK # _exptl.entry_id 8PTK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 21 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PTK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 53-meric _pdbx_struct_assembly.oligomeric_count 53 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 21 IB N N ? 21 KB N N ? 21 QB N N ? 21 WB N N ? 21 BC N N ? 21 GC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 OB O1B ADP . e ADP 4801 1_555 PB MG MG . e MG 4802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc2 QB O1G ATP . e ATP 4803 1_555 RB MG MG . e MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 QB O2B ATP . e ATP 4803 1_555 RB MG MG . e MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc4 QB O3B ATP . e ATP 4803 1_555 RB MG MG . e MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc5 UB O1B ADP . f ADP 4801 1_555 VB MG MG . f MG 4802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc6 WB O1G ATP . f ATP 4803 1_555 XB MG MG . f MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc7 WB O2B ATP . f ATP 4803 1_555 XB MG MG . f MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc8 WB O3B ATP . f ATP 4803 1_555 XB MG MG . f MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc9 BC O3G ATP . m ATP 4702 1_555 CC MG MG . m MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc10 BC O1B ATP . m ATP 4702 1_555 CC MG MG . m MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc11 GC O3G ATP . n ATP 4702 1_555 HC MG MG . n MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc12 GC O1B ATP . n ATP 4702 1_555 HC MG MG . n MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 164 n n PG O2G ATP sing 165 n n PG O3G ATP sing 166 n n PG O3B ATP sing 167 n n O2G HOG2 ATP sing 168 n n O3G HOG3 ATP sing 169 n n PB O1B ATP doub 170 n n PB O2B ATP sing 171 n n PB O3B ATP sing 172 n n PB O3A ATP sing 173 n n O2B HOB2 ATP sing 174 n n PA O1A ATP doub 175 n n PA O2A ATP sing 176 n n PA O3A ATP sing 177 n n PA O5' ATP sing 178 n n O2A HOA2 ATP sing 179 n n O5' C5' ATP sing 180 n n C5' C4' ATP sing 181 n n C5' "H5'1" ATP sing 182 n n C5' "H5'2" ATP sing 183 n n C4' O4' ATP sing 184 n n C4' C3' ATP sing 185 n n C4' H4' ATP sing 186 n n O4' C1' ATP sing 187 n n C3' O3' ATP sing 188 n n C3' C2' ATP sing 189 n n C3' H3' ATP sing 190 n n O3' HO3' ATP sing 191 n n C2' O2' ATP sing 192 n n C2' C1' ATP sing 193 n n C2' H2' ATP sing 194 n n O2' HO2' ATP sing 195 n n C1' N9 ATP sing 196 n n C1' H1' ATP sing 197 n n N9 C8 ATP sing 198 n y N9 C4 ATP sing 199 n y C8 N7 ATP doub 200 n y C8 H8 ATP sing 201 n n N7 C5 ATP sing 202 n y C5 C6 ATP sing 203 n y C5 C4 ATP doub 204 n y C6 N6 ATP sing 205 n n C6 N1 ATP doub 206 n y N6 HN61 ATP sing 207 n n N6 HN62 ATP sing 208 n n N1 C2 ATP sing 209 n y C2 N3 ATP doub 210 n y C2 H2 ATP sing 211 n n N3 C4 ATP sing 212 n y # _atom_sites.entry_id 8PTK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code BB 20 ADP A 1 800 800 ADP ADP . CB 20 ADP B 1 800 800 ADP ADP . DB 20 ADP C 1 800 800 ADP ADP . EB 20 ADP D 1 800 800 ADP ADP . FB 20 ADP E 1 800 800 ADP ADP . GB 20 ADP F 1 800 800 ADP ADP . HB 20 ADP G 1 800 800 ADP ADP . IB 21 ATP H 1 401 401 ATP ATP . JB 20 ADP I 1 800 800 ADP ADP . KB 21 ATP J 1 800 800 ATP ATP . LB 22 ZN Y 1 501 501 ZN ZN . MB 22 ZN Y 1 502 502 ZN ZN . NB 22 ZN Y 1 503 503 ZN ZN . OB 20 ADP e 1 4801 4801 ADP ADP . PB 23 MG e 1 4802 4802 MG MG . QB 21 ATP e 1 4803 4803 ATP ATP . RB 23 MG e 1 4804 4804 MG MG . SB 20 ADP e 1 4805 4805 ADP ADP . TB 20 ADP e 1 4806 4806 ADP ADP . UB 20 ADP f 1 4801 4801 ADP ADP . VB 23 MG f 1 4802 4802 MG MG . WB 21 ATP f 1 4803 4803 ATP ATP . XB 23 MG f 1 4804 4804 MG MG . YB 20 ADP f 1 4805 4805 ADP ADP . ZB 20 ADP f 1 4806 4806 ADP ADP . AC 20 ADP m 1 4701 4701 ADP ADP . BC 21 ATP m 1 4702 4702 ATP ATP . CC 23 MG m 1 4703 4703 MG MG . DC 24 ANP m 1 4704 4704 ANP ANP . EC 24 ANP m 1 4705 4705 ANP ANP . FC 20 ADP n 1 4701 4701 ADP ADP . GC 21 ATP n 1 4702 4702 ATP ATP . HC 23 MG n 1 4703 4703 MG MG . IC 24 ANP n 1 4704 4704 ANP ANP . JC 24 ANP n 1 4705 4705 ANP ANP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . GC 21 278.164 541.457 371.646 1 150.71 ? PG ATP 4702 n 1 HETATM 2 O O1G ATP . . . GC 21 277.507 541.192 372.953 1 150.71 ? O1G ATP 4702 n 1 HETATM 3 O O2G ATP . . . GC 21 278.3 540.302 370.74 1 150.71 ? O2G ATP 4702 n 1 HETATM 4 O O3G ATP . . . GC 21 279.548 542.082 371.744 1 150.71 ? O3G ATP 4702 n 1 HETATM 5 P PB ATP . . . GC 21 277.579 543.724 369.947 1 150.71 ? PB ATP 4702 n 1 HETATM 6 O O1B ATP . . . GC 21 278.496 544.671 370.602 1 150.71 ? O1B ATP 4702 n 1 HETATM 7 O O2B ATP . . . GC 21 276.194 544.232 369.562 1 150.71 ? O2B ATP 4702 n 1 HETATM 8 O O3B ATP . . . GC 21 277.344 542.486 370.832 1 150.71 ? O3B ATP 4702 n 1 HETATM 9 P PA ATP . . . GC 21 279.489 543.454 367.748 1 150.71 ? PA ATP 4702 n 1 HETATM 10 O O1A ATP . . . GC 21 279.681 544.919 367.811 1 150.71 ? O1A ATP 4702 n 1 HETATM 11 O O2A ATP . . . GC 21 280.675 542.604 368.19 1 150.71 ? O2A ATP 4702 n 1 HETATM 12 O O3A ATP . . . GC 21 278.278 543.087 368.668 1 150.71 ? O3A ATP 4702 n 1 HETATM 13 O O5' ATP . . . GC 21 279.026 542.908 366.343 1 150.71 ? O5' ATP 4702 n 1 HETATM 14 C C5' ATP . . . GC 21 278.518 541.566 366.193 1 150.71 ? C5' ATP 4702 n 1 HETATM 15 C C4' ATP . . . GC 21 278.644 541.208 364.735 1 150.71 ? C4' ATP 4702 n 1 HETATM 16 O O4' ATP . . . GC 21 277.579 541.838 364.001 1 150.71 ? O4' ATP 4702 n 1 HETATM 17 C C3' ATP . . . GC 21 279.913 541.731 364.075 1 150.71 ? C3' ATP 4702 n 1 HETATM 18 O O3' ATP . . . GC 21 281.005 540.84 364.269 1 150.71 ? O3' ATP 4702 n 1 HETATM 19 C C2' ATP . . . GC 21 279.511 541.856 362.6 1 150.71 ? C2' ATP 4702 n 1 HETATM 20 O O2' ATP . . . GC 21 279.833 540.681 361.865 1 150.71 ? O2' ATP 4702 n 1 HETATM 21 C C1' ATP . . . GC 21 277.986 542.026 362.661 1 150.71 ? C1' ATP 4702 n 1 HETATM 22 N N9 ATP . . . GC 21 277.495 543.32 362.207 1 150.71 ? N9 ATP 4702 n 1 HETATM 23 C C8 ATP . . . GC 21 277.428 544.485 362.927 1 150.71 ? C8 ATP 4702 n 1 HETATM 24 N N7 ATP . . . GC 21 276.923 545.497 362.266 1 150.71 ? N7 ATP 4702 n 1 HETATM 25 C C5 ATP . . . GC 21 276.633 544.959 361.022 1 150.71 ? C5 ATP 4702 n 1 HETATM 26 C C6 ATP . . . GC 21 276.077 545.505 359.846 1 150.71 ? C6 ATP 4702 n 1 HETATM 27 N N6 ATP . . . GC 21 275.691 546.778 359.729 1 150.71 ? N6 ATP 4702 n 1 HETATM 28 N N1 ATP . . . GC 21 275.921 544.685 358.772 1 150.71 ? N1 ATP 4702 n 1 HETATM 29 C C2 ATP . . . GC 21 276.299 543.407 358.871 1 150.71 ? C2 ATP 4702 n 1 HETATM 30 N N3 ATP . . . GC 21 276.835 542.786 359.927 1 150.71 ? N3 ATP 4702 n 1 HETATM 31 C C4 ATP . . . GC 21 276.978 543.616 360.971 1 150.71 ? C4 ATP 4702 n 1 # _model_server_stats.io_time_ms 83 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 280 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #