data_8PTK # _model_server_result.job_id RvRasn7sxQsc99Kps90P5Q _model_server_result.datetime_utc '2025-09-04 21:00:06' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ptk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"VB","auth_seq_id":4802}' # _entry.id 8PTK # _exptl.entry_id 8PTK _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 24.305 _entity.id 23 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PTK _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PTK _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 53-meric _pdbx_struct_assembly.oligomeric_count 53 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 23 PB N N ? 23 RB N N ? 23 VB N N ? 23 XB N N ? 23 CC N N ? 23 HC N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 OB O1B ADP . e ADP 4801 1_555 PB MG MG . e MG 4802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc2 QB O1G ATP . e ATP 4803 1_555 RB MG MG . e MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc3 QB O2B ATP . e ATP 4803 1_555 RB MG MG . e MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc4 QB O3B ATP . e ATP 4803 1_555 RB MG MG . e MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? metalc ? metalc5 UB O1B ADP . f ADP 4801 1_555 VB MG MG . f MG 4802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc6 WB O1G ATP . f ATP 4803 1_555 XB MG MG . f MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc7 WB O2B ATP . f ATP 4803 1_555 XB MG MG . f MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? metalc ? metalc8 WB O3B ATP . f ATP 4803 1_555 XB MG MG . f MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? metalc ? metalc9 BC O3G ATP . m ATP 4702 1_555 CC MG MG . m MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc10 BC O1B ATP . m ATP 4702 1_555 CC MG MG . m MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc11 GC O3G ATP . n ATP 4702 1_555 HC MG MG . n MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? metalc ? metalc12 GC O1B ATP . n ATP 4702 1_555 HC MG MG . n MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8PTK _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code BB 20 ADP A 1 800 800 ADP ADP . CB 20 ADP B 1 800 800 ADP ADP . DB 20 ADP C 1 800 800 ADP ADP . EB 20 ADP D 1 800 800 ADP ADP . FB 20 ADP E 1 800 800 ADP ADP . GB 20 ADP F 1 800 800 ADP ADP . HB 20 ADP G 1 800 800 ADP ADP . IB 21 ATP H 1 401 401 ATP ATP . JB 20 ADP I 1 800 800 ADP ADP . KB 21 ATP J 1 800 800 ATP ATP . LB 22 ZN Y 1 501 501 ZN ZN . MB 22 ZN Y 1 502 502 ZN ZN . NB 22 ZN Y 1 503 503 ZN ZN . OB 20 ADP e 1 4801 4801 ADP ADP . PB 23 MG e 1 4802 4802 MG MG . QB 21 ATP e 1 4803 4803 ATP ATP . RB 23 MG e 1 4804 4804 MG MG . SB 20 ADP e 1 4805 4805 ADP ADP . TB 20 ADP e 1 4806 4806 ADP ADP . UB 20 ADP f 1 4801 4801 ADP ADP . VB 23 MG f 1 4802 4802 MG MG . WB 21 ATP f 1 4803 4803 ATP ATP . XB 23 MG f 1 4804 4804 MG MG . YB 20 ADP f 1 4805 4805 ADP ADP . ZB 20 ADP f 1 4806 4806 ADP ADP . AC 20 ADP m 1 4701 4701 ADP ADP . BC 21 ATP m 1 4702 4702 ATP ATP . CC 23 MG m 1 4703 4703 MG MG . DC 24 ANP m 1 4704 4704 ANP ANP . EC 24 ANP m 1 4705 4705 ANP ANP . FC 20 ADP n 1 4701 4701 ADP ADP . GC 21 ATP n 1 4702 4702 ATP ATP . HC 23 MG n 1 4703 4703 MG MG . IC 24 ANP n 1 4704 4704 ANP ANP . JC 24 ANP n 1 4705 4705 ANP ANP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id VB _atom_site.label_entity_id 23 _atom_site.Cartn_x 231.902 _atom_site.Cartn_y 328.148 _atom_site.Cartn_z 390.221 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 76.24 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 4802 _atom_site.auth_asym_id f _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 115 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 209 _model_server_stats.query_time_ms 401 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 1 #