data_8PTK
#
_model_server_result.job_id            iuCoCISSJ8AYofuNhrj0nA 
_model_server_result.datetime_utc      '2025-09-05 01:19:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ptk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"TB","auth_seq_id":4806}' 
#
_entry.id    8PTK 
#
_exptl.entry_id    8PTK 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          20 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    16 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PTK 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PTK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    53-meric 
_pdbx_struct_assembly.oligomeric_count      53 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB,UB,VB,WB,XB,YB,ZB,AC,BC,CC,DC,EC,FC,GC,HC,IC,JC 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 20 BB N N 
? 20 CB N N 
? 20 DB N N 
? 20 EB N N 
? 20 FB N N 
? 20 GB N N 
? 20 HB N N 
? 20 JB N N 
? 20 OB N N 
? 20 SB N N 
? 20 TB N N 
? 20 UB N N 
? 20 YB N N 
? 20 ZB N N 
? 20 AC N N 
? 20 FC N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 OB O1B ADP . e ADP 4801 1_555 PB MG MG . e MG 4802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc2 QB O1G ATP . e ATP 4803 1_555 RB MG MG . e MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc3 QB O2B ATP . e ATP 4803 1_555 RB MG MG . e MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc4 QB O3B ATP . e ATP 4803 1_555 RB MG MG . e MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.528 ? 
metalc ? metalc5 UB O1B ADP . f ADP 4801 1_555 VB MG MG . f MG 4802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? 
metalc ? metalc6 WB O1G ATP . f ATP 4803 1_555 XB MG MG . f MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc7 WB O2B ATP . f ATP 4803 1_555 XB MG MG . f MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.694 ? 
metalc ? metalc8 WB O3B ATP . f ATP 4803 1_555 XB MG MG . f MG 4804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.527 ? 
metalc ? metalc9 BC O3G ATP . m ATP 4702 1_555 CC MG MG . m MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? 
metalc ? metalc10 BC O1B ATP . m ATP 4702 1_555 CC MG MG . m MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? 
metalc ? metalc11 GC O3G ATP . n ATP 4702 1_555 HC MG MG . n MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.74 ? 
metalc ? metalc12 GC O1B ATP . n ATP 4702 1_555 HC MG MG . n MG 4703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     8PTK 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
BB 20 ADP A 1 800 800 ADP ADP . 
CB 20 ADP B 1 800 800 ADP ADP . 
DB 20 ADP C 1 800 800 ADP ADP . 
EB 20 ADP D 1 800 800 ADP ADP . 
FB 20 ADP E 1 800 800 ADP ADP . 
GB 20 ADP F 1 800 800 ADP ADP . 
HB 20 ADP G 1 800 800 ADP ADP . 
IB 21 ATP H 1 401 401 ATP ATP . 
JB 20 ADP I 1 800 800 ADP ADP . 
KB 21 ATP J 1 800 800 ATP ATP . 
LB 22 ZN Y 1 501 501 ZN ZN . 
MB 22 ZN Y 1 502 502 ZN ZN . 
NB 22 ZN Y 1 503 503 ZN ZN . 
OB 20 ADP e 1 4801 4801 ADP ADP . 
PB 23 MG e 1 4802 4802 MG MG . 
QB 21 ATP e 1 4803 4803 ATP ATP . 
RB 23 MG e 1 4804 4804 MG MG . 
SB 20 ADP e 1 4805 4805 ADP ADP . 
TB 20 ADP e 1 4806 4806 ADP ADP . 
UB 20 ADP f 1 4801 4801 ADP ADP . 
VB 23 MG f 1 4802 4802 MG MG . 
WB 21 ATP f 1 4803 4803 ATP ATP . 
XB 23 MG f 1 4804 4804 MG MG . 
YB 20 ADP f 1 4805 4805 ADP ADP . 
ZB 20 ADP f 1 4806 4806 ADP ADP . 
AC 20 ADP m 1 4701 4701 ADP ADP . 
BC 21 ATP m 1 4702 4702 ATP ATP . 
CC 23 MG m 1 4703 4703 MG MG . 
DC 24 ANP m 1 4704 4704 ANP ANP . 
EC 24 ANP m 1 4705 4705 ANP ANP . 
FC 20 ADP n 1 4701 4701 ADP ADP . 
GC 21 ATP n 1 4702 4702 ATP ATP . 
HC 23 MG n 1 4703 4703 MG MG . 
IC 24 ANP n 1 4704 4704 ANP ANP . 
JC 24 ANP n 1 4705 4705 ANP ANP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . TB 20 253.237 290.197 486.747 1 112.01 ? PB ADP 4806 e 1 
HETATM 2 O O1B ADP . . . TB 20 252.175 289.889 485.721 1 112.01 ? O1B ADP 4806 e 1 
HETATM 3 O O2B ADP . . . TB 20 253.468 289.108 487.763 1 112.01 ? O2B ADP 4806 e 1 
HETATM 4 O O3B ADP . . . TB 20 254.504 290.787 486.18 1 112.01 ? O3B ADP 4806 e 1 
HETATM 5 P PA ADP . . . TB 20 252.707 292.904 487.037 1 112.01 ? PA ADP 4806 e 1 
HETATM 6 O O1A ADP . . . TB 20 252.21 292.896 485.612 1 112.01 ? O1A ADP 4806 e 1 
HETATM 7 O O2A ADP . . . TB 20 254.073 293.45 487.367 1 112.01 ? O2A ADP 4806 e 1 
HETATM 8 O O3A ADP . . . TB 20 252.612 291.404 487.606 1 112.01 ? O3A ADP 4806 e 1 
HETATM 9 O O5' ADP . . . TB 20 251.647 293.73 487.916 1 112.01 ? O5' ADP 4806 e 1 
HETATM 10 C C5' ADP . . . TB 20 251.447 295.098 487.58 1 112.01 ? C5' ADP 4806 e 1 
HETATM 11 C C4' ADP . . . TB 20 250.675 295.822 488.671 1 112.01 ? C4' ADP 4806 e 1 
HETATM 12 O O4' ADP . . . TB 20 250.99 295.308 489.968 1 112.01 ? O4' ADP 4806 e 1 
HETATM 13 C C3' ADP . . . TB 20 251.025 297.299 488.66 1 112.01 ? C3' ADP 4806 e 1 
HETATM 14 O O3' ADP . . . TB 20 249.881 298.076 488.298 1 112.01 ? O3' ADP 4806 e 1 
HETATM 15 C C2' ADP . . . TB 20 251.446 297.619 490.077 1 112.01 ? C2' ADP 4806 e 1 
HETATM 16 O O2' ADP . . . TB 20 250.684 298.719 490.581 1 112.01 ? O2' ADP 4806 e 1 
HETATM 17 C C1' ADP . . . TB 20 251.172 296.374 490.904 1 112.01 ? C1' ADP 4806 e 1 
HETATM 18 N N9 ADP . . . TB 20 252.332 296.061 491.773 1 112.01 ? N9 ADP 4806 e 1 
HETATM 19 C C8 ADP . . . TB 20 252.99 294.89 491.769 1 112.01 ? C8 ADP 4806 e 1 
HETATM 20 N N7 ADP . . . TB 20 254.004 294.886 492.668 1 112.01 ? N7 ADP 4806 e 1 
HETATM 21 C C5 ADP . . . TB 20 254.002 296.084 493.276 1 112.01 ? C5 ADP 4806 e 1 
HETATM 22 C C6 ADP . . . TB 20 254.809 296.74 494.331 1 112.01 ? C6 ADP 4806 e 1 
HETATM 23 N N6 ADP . . . TB 20 255.845 296.1 494.927 1 112.01 ? N6 ADP 4806 e 1 
HETATM 24 N N1 ADP . . . TB 20 254.479 298.002 494.676 1 112.01 ? N1 ADP 4806 e 1 
HETATM 25 C C2 ADP . . . TB 20 253.453 298.651 494.1 1 112.01 ? C2 ADP 4806 e 1 
HETATM 26 N N3 ADP . . . TB 20 252.683 298.116 493.14 1 112.01 ? N3 ADP 4806 e 1 
HETATM 27 C C4 ADP . . . TB 20 252.896 296.856 492.689 1 112.01 ? C4 ADP 4806 e 1 
#
_model_server_stats.io_time_ms              77 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    196 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           27 
#