data_8PTS # _model_server_result.job_id HQFX4kbRUqpW4YfazkHHNw _model_server_result.datetime_utc '2024-10-10 10:28:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pts # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 8PTS # _exptl.entry_id 8PTS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.238 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.79 _cell.angle_gamma 90 _cell.entry_id 8PTS _cell.length_a 132.773 _cell.length_b 54.273 _cell.length_c 58.957 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PTS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C11 H15 F N5 O7 P' _chem_comp.formula_weight 379.238 _chem_comp.id EIF _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},3~{R},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N3 C9 EIF sing 83 n n F C1 EIF sing 84 n n C9 N2 EIF doub 85 n n C9 N4 EIF sing 86 n n N2 C8 EIF sing 87 n n C5 C1 EIF sing 88 n n C5 O5 EIF sing 89 n n C5 N EIF sing 90 n n N4 C10 EIF sing 91 n n C1 C EIF sing 92 n n C1 C2 EIF sing 93 n n C8 N EIF sing 94 n y C8 C7 EIF doub 95 n y O5 C3 EIF sing 96 n n C3 C2 EIF sing 97 n n C3 C4 EIF sing 98 n n O C2 EIF sing 99 n n N C6 EIF sing 100 n y C10 C7 EIF sing 101 n n C10 O6 EIF doub 102 n n C4 O1 EIF sing 103 n n C7 N1 EIF sing 104 n y C6 N1 EIF doub 105 n y O1 P EIF sing 106 n n O3 P EIF doub 107 n n P O4 EIF sing 108 n n P O2 EIF sing 109 n n C6 H11 EIF sing 110 n n N4 H14 EIF sing 111 n n N3 H12 EIF sing 112 n n N3 H13 EIF sing 113 n n C5 H2 EIF sing 114 n n C H5 EIF sing 115 n n C H4 EIF sing 116 n n C H3 EIF sing 117 n n C3 H1 EIF sing 118 n n C2 H EIF sing 119 n n O H6 EIF sing 120 n n C4 H7 EIF sing 121 n n C4 H8 EIF sing 122 n n O2 H9 EIF sing 123 n n O4 H15 EIF sing 124 n n # _atom_sites.entry_id 8PTS _atom_sites.fract_transf_matrix[1][1] 0.007532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002563 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EIF A 1 201 201 EIF EXI . D 2 EIF B 1 201 201 EIF EXI . E 3 GOL B 1 202 202 GOL GOL . F 4 HOH A 1 301 116 HOH HOH . F 4 HOH A 2 302 98 HOH HOH . F 4 HOH A 3 303 100 HOH HOH . F 4 HOH A 4 304 60 HOH HOH . F 4 HOH A 5 305 48 HOH HOH . F 4 HOH A 6 306 59 HOH HOH . F 4 HOH A 7 307 69 HOH HOH . F 4 HOH A 8 308 62 HOH HOH . F 4 HOH A 9 309 30 HOH HOH . F 4 HOH A 10 310 87 HOH HOH . F 4 HOH A 11 311 96 HOH HOH . F 4 HOH A 12 312 37 HOH HOH . F 4 HOH A 13 313 57 HOH HOH . F 4 HOH A 14 314 73 HOH HOH . F 4 HOH A 15 315 29 HOH HOH . F 4 HOH A 16 316 31 HOH HOH . F 4 HOH A 17 317 65 HOH HOH . F 4 HOH A 18 318 70 HOH HOH . F 4 HOH A 19 319 102 HOH HOH . F 4 HOH A 20 320 61 HOH HOH . F 4 HOH A 21 321 51 HOH HOH . F 4 HOH A 22 322 86 HOH HOH . F 4 HOH A 23 323 26 HOH HOH . F 4 HOH A 24 324 7 HOH HOH . F 4 HOH A 25 325 45 HOH HOH . F 4 HOH A 26 326 15 HOH HOH . F 4 HOH A 27 327 12 HOH HOH . F 4 HOH A 28 328 72 HOH HOH . F 4 HOH A 29 329 42 HOH HOH . F 4 HOH A 30 330 21 HOH HOH . F 4 HOH A 31 331 39 HOH HOH . F 4 HOH A 32 332 41 HOH HOH . F 4 HOH A 33 333 28 HOH HOH . F 4 HOH A 34 334 63 HOH HOH . F 4 HOH A 35 335 74 HOH HOH . F 4 HOH A 36 336 53 HOH HOH . F 4 HOH A 37 337 76 HOH HOH . F 4 HOH A 38 338 88 HOH HOH . F 4 HOH A 39 339 54 HOH HOH . F 4 HOH A 40 340 117 HOH HOH . F 4 HOH A 41 341 110 HOH HOH . F 4 HOH A 42 342 115 HOH HOH . F 4 HOH A 43 343 93 HOH HOH . F 4 HOH A 44 344 111 HOH HOH . F 4 HOH A 45 345 68 HOH HOH . F 4 HOH A 46 346 19 HOH HOH . F 4 HOH A 47 347 75 HOH HOH . F 4 HOH A 48 348 85 HOH HOH . G 4 HOH B 1 301 103 HOH HOH . G 4 HOH B 2 302 105 HOH HOH . G 4 HOH B 3 303 119 HOH HOH . G 4 HOH B 4 304 120 HOH HOH . G 4 HOH B 5 305 95 HOH HOH . G 4 HOH B 6 306 108 HOH HOH . G 4 HOH B 7 307 94 HOH HOH . G 4 HOH B 8 308 80 HOH HOH . G 4 HOH B 9 309 52 HOH HOH . G 4 HOH B 10 310 107 HOH HOH . G 4 HOH B 11 311 34 HOH HOH . G 4 HOH B 12 312 22 HOH HOH . G 4 HOH B 13 313 99 HOH HOH . G 4 HOH B 14 314 33 HOH HOH . G 4 HOH B 15 315 23 HOH HOH . G 4 HOH B 16 316 36 HOH HOH . G 4 HOH B 17 317 8 HOH HOH . G 4 HOH B 18 318 77 HOH HOH . G 4 HOH B 19 319 20 HOH HOH . G 4 HOH B 20 320 3 HOH HOH . G 4 HOH B 21 321 32 HOH HOH . G 4 HOH B 22 322 17 HOH HOH . G 4 HOH B 23 323 83 HOH HOH . G 4 HOH B 24 324 10 HOH HOH . G 4 HOH B 25 325 44 HOH HOH . G 4 HOH B 26 326 112 HOH HOH . G 4 HOH B 27 327 1 HOH HOH . G 4 HOH B 28 328 18 HOH HOH . G 4 HOH B 29 329 13 HOH HOH . G 4 HOH B 30 330 11 HOH HOH . G 4 HOH B 31 331 91 HOH HOH . G 4 HOH B 32 332 55 HOH HOH . G 4 HOH B 33 333 67 HOH HOH . G 4 HOH B 34 334 79 HOH HOH . G 4 HOH B 35 335 109 HOH HOH . G 4 HOH B 36 336 9 HOH HOH . G 4 HOH B 37 337 113 HOH HOH . G 4 HOH B 38 338 14 HOH HOH . G 4 HOH B 39 339 50 HOH HOH . G 4 HOH B 40 340 89 HOH HOH . G 4 HOH B 41 341 104 HOH HOH . G 4 HOH B 42 342 40 HOH HOH . G 4 HOH B 43 343 92 HOH HOH . G 4 HOH B 44 344 58 HOH HOH . G 4 HOH B 45 345 6 HOH HOH . G 4 HOH B 46 346 64 HOH HOH . G 4 HOH B 47 347 90 HOH HOH . G 4 HOH B 48 348 66 HOH HOH . G 4 HOH B 49 349 49 HOH HOH . G 4 HOH B 50 350 35 HOH HOH . G 4 HOH B 51 351 38 HOH HOH . G 4 HOH B 52 352 25 HOH HOH . G 4 HOH B 53 353 16 HOH HOH . G 4 HOH B 54 354 47 HOH HOH . G 4 HOH B 55 355 97 HOH HOH . G 4 HOH B 56 356 118 HOH HOH . G 4 HOH B 57 357 81 HOH HOH . G 4 HOH B 58 358 27 HOH HOH . G 4 HOH B 59 359 46 HOH HOH . G 4 HOH B 60 360 106 HOH HOH . G 4 HOH B 61 361 5 HOH HOH . G 4 HOH B 62 362 43 HOH HOH . G 4 HOH B 63 363 84 HOH HOH . G 4 HOH B 64 364 101 HOH HOH . G 4 HOH B 65 365 2 HOH HOH . G 4 HOH B 66 366 114 HOH HOH . G 4 HOH B 67 367 24 HOH HOH . G 4 HOH B 68 368 78 HOH HOH . G 4 HOH B 69 369 71 HOH HOH . G 4 HOH B 70 370 56 HOH HOH . G 4 HOH B 71 371 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O6 EIF . . . D 2 45.832 69.722 19.246 1 23.84 ? O6 EIF 201 B 1 HETATM 2 C C10 EIF . . . D 2 46.527 69.61 18.248 1 25.37 ? C10 EIF 201 B 1 HETATM 3 C C7 EIF . . . D 2 46.34 70.214 16.982 1 26.47 ? C7 EIF 201 B 1 HETATM 4 N N1 EIF . . . D 2 45.339 71.042 16.508 1 26.9 ? N1 EIF 201 B 1 HETATM 5 C C6 EIF . . . D 2 45.69 71.299 15.272 1 27.82 ? C6 EIF 201 B 1 HETATM 6 N N4 EIF . . . D 2 47.668 68.84 18.29 1 26.26 ? N4 EIF 201 B 1 HETATM 7 C C9 EIF . . . D 2 48.537 68.659 17.256 1 27.12 ? C9 EIF 201 B 1 HETATM 8 N N3 EIF . . . D 2 49.606 67.9 17.485 1 26.53 ? N3 EIF 201 B 1 HETATM 9 N N2 EIF . . . D 2 48.376 69.224 16.068 1 26.98 ? N2 EIF 201 B 1 HETATM 10 C C8 EIF . . . D 2 47.271 69.983 16.005 1 27.78 ? C8 EIF 201 B 1 HETATM 11 N N EIF . . . D 2 46.855 70.692 14.912 1 28.78 ? N EIF 201 B 1 HETATM 12 C C5 EIF . . . D 2 47.576 70.749 13.647 1 30.33 ? C5 EIF 201 B 1 HETATM 13 C C1 EIF . . . D 2 46.966 69.857 12.524 1 31.69 ? C1 EIF 201 B 1 HETATM 14 F F EIF . . . D 2 48.049 69.283 11.841 1 32.77 ? F EIF 201 B 1 HETATM 15 C C EIF . . . D 2 46.125 68.783 13.001 1 30.88 ? C EIF 201 B 1 HETATM 16 O O5 EIF . . . D 2 47.573 72.1 13.185 1 30.97 ? O5 EIF 201 B 1 HETATM 17 C C3 EIF . . . D 2 47.234 72.04 11.788 1 31.34 ? C3 EIF 201 B 1 HETATM 18 C C2 EIF . . . D 2 46.228 70.907 11.734 1 32.38 ? C2 EIF 201 B 1 HETATM 19 O O EIF . . . D 2 46.054 70.333 10.446 1 33.75 ? O EIF 201 B 1 HETATM 20 C C4 EIF . . . D 2 46.76 73.392 11.325 1 30.92 ? C4 EIF 201 B 1 HETATM 21 O O1 EIF . . . D 2 45.467 73.673 11.878 1 30.13 ? O1 EIF 201 B 1 HETATM 22 P P EIF . . . D 2 44.669 74.875 11.255 1 30.84 ? P EIF 201 B 1 HETATM 23 O O4 EIF . . . D 2 44.389 74.495 9.821 1 32.48 ? O4 EIF 201 B 1 HETATM 24 O O3 EIF . . . D 2 45.491 76.03 11.348 1 30.88 ? O3 EIF 201 B 1 HETATM 25 O O2 EIF . . . D 2 43.394 74.995 12.01 1 28.6 ? O2 EIF 201 B 1 HETATM 26 H H11 EIF . . . D 2 45.126 71.923 14.588 0 27.82 ? H11 EIF 201 B 1 HETATM 27 H H14 EIF . . . D 2 47.842 68.424 19.182 0 26.26 ? H14 EIF 201 B 1 HETATM 28 H H12 EIF . . . D 2 49.77 67.478 18.391 0 26.53 ? H12 EIF 201 B 1 HETATM 29 H H13 EIF . . . D 2 50.311 67.706 16.782 0 26.53 ? H13 EIF 201 B 1 HETATM 30 H H2 EIF . . . D 2 48.62 70.52 13.844 0 30.33 ? H2 EIF 201 B 1 HETATM 31 H H5 EIF . . . D 2 45.88 68.076 12.211 0 30.88 ? H5 EIF 201 B 1 HETATM 32 H H4 EIF . . . D 2 45.18 69.166 13.382 0 30.88 ? H4 EIF 201 B 1 HETATM 33 H H3 EIF . . . D 2 46.593 68.218 13.806 0 30.88 ? H3 EIF 201 B 1 HETATM 34 H H1 EIF . . . D 2 48.141 71.783 11.251 0 31.34 ? H1 EIF 201 B 1 HETATM 35 H H EIF . . . D 2 45.27 71.144 12.191 0 32.38 ? H EIF 201 B 1 HETATM 36 H H6 EIF . . . D 2 45.167 69.889 10.449 0 33.75 ? H6 EIF 201 B 1 HETATM 37 H H7 EIF . . . D 2 46.727 73.441 10.24 0 30.92 ? H7 EIF 201 B 1 HETATM 38 H H8 EIF . . . D 2 47.445 74.165 11.659 0 30.92 ? H8 EIF 201 B 1 HETATM 39 H H9 EIF . . . D 2 42.944 74.219 12.434 0 28.6 ? H9 EIF 201 B 1 HETATM 40 H H15 EIF . . . D 2 45.055 74.5 9.085 0 32.48 ? H15 EIF 201 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 139 _model_server_stats.create_model_time_ms 42 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #