data_8PTS # _model_server_result.job_id wMRv5tma6BO-F-P732pzPw _model_server_result.datetime_utc '2024-10-10 10:20:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pts # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":202}' # _entry.id 8PTS # _exptl.entry_id 8PTS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.79 _cell.angle_gamma 90 _cell.entry_id 8PTS _cell.length_a 132.773 _cell.length_b 54.273 _cell.length_c 58.957 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PTS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 171 n n C1 C2 GOL sing 172 n n C1 H11 GOL sing 173 n n C1 H12 GOL sing 174 n n O1 HO1 GOL sing 175 n n C2 O2 GOL sing 176 n n C2 C3 GOL sing 177 n n C2 H2 GOL sing 178 n n O2 HO2 GOL sing 179 n n C3 O3 GOL sing 180 n n C3 H31 GOL sing 181 n n C3 H32 GOL sing 182 n n O3 HO3 GOL sing 183 n n # _atom_sites.entry_id 8PTS _atom_sites.fract_transf_matrix[1][1] 0.007532 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002563 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018425 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017916 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 EIF A 1 201 201 EIF EXI . D 2 EIF B 1 201 201 EIF EXI . E 3 GOL B 1 202 202 GOL GOL . F 4 HOH A 1 301 116 HOH HOH . F 4 HOH A 2 302 98 HOH HOH . F 4 HOH A 3 303 100 HOH HOH . F 4 HOH A 4 304 60 HOH HOH . F 4 HOH A 5 305 48 HOH HOH . F 4 HOH A 6 306 59 HOH HOH . F 4 HOH A 7 307 69 HOH HOH . F 4 HOH A 8 308 62 HOH HOH . F 4 HOH A 9 309 30 HOH HOH . F 4 HOH A 10 310 87 HOH HOH . F 4 HOH A 11 311 96 HOH HOH . F 4 HOH A 12 312 37 HOH HOH . F 4 HOH A 13 313 57 HOH HOH . F 4 HOH A 14 314 73 HOH HOH . F 4 HOH A 15 315 29 HOH HOH . F 4 HOH A 16 316 31 HOH HOH . F 4 HOH A 17 317 65 HOH HOH . F 4 HOH A 18 318 70 HOH HOH . F 4 HOH A 19 319 102 HOH HOH . F 4 HOH A 20 320 61 HOH HOH . F 4 HOH A 21 321 51 HOH HOH . F 4 HOH A 22 322 86 HOH HOH . F 4 HOH A 23 323 26 HOH HOH . F 4 HOH A 24 324 7 HOH HOH . F 4 HOH A 25 325 45 HOH HOH . F 4 HOH A 26 326 15 HOH HOH . F 4 HOH A 27 327 12 HOH HOH . F 4 HOH A 28 328 72 HOH HOH . F 4 HOH A 29 329 42 HOH HOH . F 4 HOH A 30 330 21 HOH HOH . F 4 HOH A 31 331 39 HOH HOH . F 4 HOH A 32 332 41 HOH HOH . F 4 HOH A 33 333 28 HOH HOH . F 4 HOH A 34 334 63 HOH HOH . F 4 HOH A 35 335 74 HOH HOH . F 4 HOH A 36 336 53 HOH HOH . F 4 HOH A 37 337 76 HOH HOH . F 4 HOH A 38 338 88 HOH HOH . F 4 HOH A 39 339 54 HOH HOH . F 4 HOH A 40 340 117 HOH HOH . F 4 HOH A 41 341 110 HOH HOH . F 4 HOH A 42 342 115 HOH HOH . F 4 HOH A 43 343 93 HOH HOH . F 4 HOH A 44 344 111 HOH HOH . F 4 HOH A 45 345 68 HOH HOH . F 4 HOH A 46 346 19 HOH HOH . F 4 HOH A 47 347 75 HOH HOH . F 4 HOH A 48 348 85 HOH HOH . G 4 HOH B 1 301 103 HOH HOH . G 4 HOH B 2 302 105 HOH HOH . G 4 HOH B 3 303 119 HOH HOH . G 4 HOH B 4 304 120 HOH HOH . G 4 HOH B 5 305 95 HOH HOH . G 4 HOH B 6 306 108 HOH HOH . G 4 HOH B 7 307 94 HOH HOH . G 4 HOH B 8 308 80 HOH HOH . G 4 HOH B 9 309 52 HOH HOH . G 4 HOH B 10 310 107 HOH HOH . G 4 HOH B 11 311 34 HOH HOH . G 4 HOH B 12 312 22 HOH HOH . G 4 HOH B 13 313 99 HOH HOH . G 4 HOH B 14 314 33 HOH HOH . G 4 HOH B 15 315 23 HOH HOH . G 4 HOH B 16 316 36 HOH HOH . G 4 HOH B 17 317 8 HOH HOH . G 4 HOH B 18 318 77 HOH HOH . G 4 HOH B 19 319 20 HOH HOH . G 4 HOH B 20 320 3 HOH HOH . G 4 HOH B 21 321 32 HOH HOH . G 4 HOH B 22 322 17 HOH HOH . G 4 HOH B 23 323 83 HOH HOH . G 4 HOH B 24 324 10 HOH HOH . G 4 HOH B 25 325 44 HOH HOH . G 4 HOH B 26 326 112 HOH HOH . G 4 HOH B 27 327 1 HOH HOH . G 4 HOH B 28 328 18 HOH HOH . G 4 HOH B 29 329 13 HOH HOH . G 4 HOH B 30 330 11 HOH HOH . G 4 HOH B 31 331 91 HOH HOH . G 4 HOH B 32 332 55 HOH HOH . G 4 HOH B 33 333 67 HOH HOH . G 4 HOH B 34 334 79 HOH HOH . G 4 HOH B 35 335 109 HOH HOH . G 4 HOH B 36 336 9 HOH HOH . G 4 HOH B 37 337 113 HOH HOH . G 4 HOH B 38 338 14 HOH HOH . G 4 HOH B 39 339 50 HOH HOH . G 4 HOH B 40 340 89 HOH HOH . G 4 HOH B 41 341 104 HOH HOH . G 4 HOH B 42 342 40 HOH HOH . G 4 HOH B 43 343 92 HOH HOH . G 4 HOH B 44 344 58 HOH HOH . G 4 HOH B 45 345 6 HOH HOH . G 4 HOH B 46 346 64 HOH HOH . G 4 HOH B 47 347 90 HOH HOH . G 4 HOH B 48 348 66 HOH HOH . G 4 HOH B 49 349 49 HOH HOH . G 4 HOH B 50 350 35 HOH HOH . G 4 HOH B 51 351 38 HOH HOH . G 4 HOH B 52 352 25 HOH HOH . G 4 HOH B 53 353 16 HOH HOH . G 4 HOH B 54 354 47 HOH HOH . G 4 HOH B 55 355 97 HOH HOH . G 4 HOH B 56 356 118 HOH HOH . G 4 HOH B 57 357 81 HOH HOH . G 4 HOH B 58 358 27 HOH HOH . G 4 HOH B 59 359 46 HOH HOH . G 4 HOH B 60 360 106 HOH HOH . G 4 HOH B 61 361 5 HOH HOH . G 4 HOH B 62 362 43 HOH HOH . G 4 HOH B 63 363 84 HOH HOH . G 4 HOH B 64 364 101 HOH HOH . G 4 HOH B 65 365 2 HOH HOH . G 4 HOH B 66 366 114 HOH HOH . G 4 HOH B 67 367 24 HOH HOH . G 4 HOH B 68 368 78 HOH HOH . G 4 HOH B 69 369 71 HOH HOH . G 4 HOH B 70 370 56 HOH HOH . G 4 HOH B 71 371 82 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 3 44.334 66.489 16.6 1 62.14 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . E 3 43.789 67.745 16.214 1 62.04 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . E 3 44.581 66.435 18.09 1 62.06 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . E 3 43.352 66.626 18.795 1 62.17 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . E 3 45.219 65.136 18.526 1 61.85 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . E 3 44.265 64.079 18.55 1 61.79 ? O3 GOL 202 B 1 HETATM 7 H H11 GOL . . . E 3 45.27 66.356 16.051 0 62.14 ? H11 GOL 202 B 1 HETATM 8 H H12 GOL . . . E 3 43.626 65.714 16.297 0 62.14 ? H12 GOL 202 B 1 HETATM 9 H HO1 GOL . . . E 3 44.464 68.426 16.378 0 62.04 ? HO1 GOL 202 B 1 HETATM 10 H H2 GOL . . . E 3 45.216 67.273 18.387 0 62.06 ? H2 GOL 202 B 1 HETATM 11 H HO2 GOL . . . E 3 42.741 65.907 18.562 0 62.17 ? HO2 GOL 202 B 1 HETATM 12 H H31 GOL . . . E 3 45.611 65.236 19.542 0 61.85 ? H31 GOL 202 B 1 HETATM 13 H H32 GOL . . . E 3 46.042 64.864 17.857 0 61.85 ? H32 GOL 202 B 1 HETATM 14 H HO3 GOL . . . E 3 44.223 63.654 17.675 0 61.79 ? HO3 GOL 202 B 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 34 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #