data_8PUM # _model_server_result.job_id 8CR4VQS907i9PDW8fWRnQw _model_server_result.datetime_utc '2024-11-10 01:23:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pum # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8PUM # _exptl.entry_id 8PUM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 116.14 _cell.angle_gamma 90 _cell.entry_id 8PUM _cell.length_a 83.975 _cell.length_b 101.639 _cell.length_c 95.958 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PUM _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 41.699167 0 86.143437 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C SER 223 A SER 241 1_555 A N LLP 224 A LLP 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C LLP 224 A LLP 242 1_555 A N GLY 225 A GLY 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B C SER 223 B SER 241 1_555 B N LLP 224 B LLP 242 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale4 B C LLP 224 B LLP 242 1_555 B N GLY 225 B GLY 243 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A O THR 29 A THR 47 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.82 ? metalc ? metalc2 A O THR 31 A THR 49 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.582 ? metalc ? metalc3 A OG1 THR 31 A THR 49 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc4 A O SER 223 A SER 241 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.666 ? metalc ? metalc5 A O ALA 228 A ALA 246 1_555 C NA NA . A NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.857 ? metalc ? metalc6 A OE1 GLN 257 A GLN 275 1_555 D NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.487 ? metalc ? metalc7 C NA NA . A NA 501 1_555 E O HOH . A HOH 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.087 ? metalc ? metalc8 C NA NA . A NA 501 1_555 B OE1 GLN 257 B GLN 275 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc9 B O THR 29 B THR 47 1_555 D NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc10 B O THR 31 B THR 49 1_555 D NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.917 ? metalc ? metalc11 B OG1 THR 31 B THR 49 1_555 D NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.581 ? metalc ? metalc12 B O SER 223 B SER 241 1_555 D NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc13 B O ALA 228 B ALA 246 1_555 D NA NA . B NA 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.762 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8PUM _atom_sites.fract_transf_matrix[1][1] 0.011908 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005844 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011609 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA A 1 501 102 NA NA . D 2 NA B 1 501 101 NA NA . E 3 HOH A 1 601 8 HOH HOH . E 3 HOH A 2 602 27 HOH HOH . E 3 HOH A 3 603 1 HOH HOH . E 3 HOH A 4 604 15 HOH HOH . E 3 HOH A 5 605 24 HOH HOH . E 3 HOH A 6 606 23 HOH HOH . E 3 HOH A 7 607 3 HOH HOH . E 3 HOH A 8 608 6 HOH HOH . E 3 HOH A 9 609 26 HOH HOH . E 3 HOH A 10 610 16 HOH HOH . E 3 HOH A 11 611 20 HOH HOH . E 3 HOH A 12 612 19 HOH HOH . E 3 HOH A 13 613 11 HOH HOH . E 3 HOH A 14 614 14 HOH HOH . E 3 HOH A 15 615 25 HOH HOH . E 3 HOH A 16 616 5 HOH HOH . E 3 HOH A 17 617 12 HOH HOH . E 3 HOH A 18 618 22 HOH HOH . F 3 HOH B 1 601 13 HOH HOH . F 3 HOH B 2 602 2 HOH HOH . F 3 HOH B 3 603 30 HOH HOH . F 3 HOH B 4 604 9 HOH HOH . F 3 HOH B 5 605 28 HOH HOH . F 3 HOH B 6 606 31 HOH HOH . F 3 HOH B 7 607 29 HOH HOH . F 3 HOH B 8 608 4 HOH HOH . F 3 HOH B 9 609 18 HOH HOH . F 3 HOH B 10 610 21 HOH HOH . F 3 HOH B 11 611 7 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 9.807 _atom_site.Cartn_y -2.133 _atom_site.Cartn_z 13.117 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 63.49 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 295 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #