data_8PUP # _model_server_result.job_id prNnoVXq8Ma8LO0pm2ZeYg _model_server_result.datetime_utc '2025-01-25 11:49:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pup # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":208}' # _entry.id 8PUP # _exptl.entry_id 8PUP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 353.326 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[(4-hydroxyphenyl)methyl]-3,4,6-tris(oxidanyl)-5-oxidanylidene-benzo[7]annulene-8-carboxamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PUP _cell.length_a 73.95 _cell.length_b 73.95 _cell.length_c 126.61 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PUP _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 50 A HIS 41 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc2 A OE1 GLU 70 A GLU 80 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.123 ? metalc ? metalc3 A OD2 ASP 98 A ASP 108 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc4 A OD1 ASP 98 A ASP 108 1_555 C MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.949 ? metalc ? metalc5 A OE2 GLU 109 A GLU 119 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.299 ? metalc ? metalc6 A O ILE 110 A ILE 120 1_555 B MN MN . A MN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc7 B MN MN . A MN 201 1_555 I O1 H2I . A H2I 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.822 ? metalc ? metalc8 B MN MN . A MN 201 1_555 I O6 H2I . A H2I 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.929 ? metalc ? metalc9 C MG MG . A MG 202 1_555 I O5 H2I . A H2I 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.954 ? metalc ? metalc10 C MG MG . A MG 202 1_555 I O6 H2I . A H2I 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc11 C MG MG . A MG 202 1_555 J O HOH . A HOH 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.15 ? metalc ? metalc12 C MG MG . A MG 202 1_555 J O HOH . A HOH 319 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? # _chem_comp.formula 'C19 H15 N O6' _chem_comp.formula_weight 353.326 _chem_comp.id H2I _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[(4-hydroxyphenyl)methyl]-3,4,6-tris(oxidanyl)-5-oxidanylidene-benzo[7]annulene-8-carboxamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 C16 H2I sing 138 n n O5 C17 H2I doub 139 n n C16 C17 H2I sing 140 n n C16 C15 H2I doub 141 n n C17 C18 H2I sing 142 n n O6 C19 H2I sing 143 n n C15 C6 H2I sing 144 n n C18 C19 H2I doub 145 n y C18 C4 H2I sing 146 n y C19 C1 H2I sing 147 n y C6 C5 H2I doub 148 n n C6 C7 H2I sing 149 n n N1 C7 H2I sing 150 n n N1 C8 H2I sing 151 n n C4 C5 H2I sing 152 n n C4 C3 H2I doub 153 n y C7 O3 H2I doub 154 n n C1 O1 H2I sing 155 n n C1 C2 H2I doub 156 n y C8 C9 H2I sing 157 n n C3 C2 H2I sing 158 n y C9 C10 H2I doub 159 n y C9 C14 H2I sing 160 n y C10 C11 H2I sing 161 n y C14 C13 H2I doub 162 n y C11 C12 H2I doub 163 n y C13 C12 H2I sing 164 n y C12 O2 H2I sing 165 n n N1 H1 H2I sing 166 n n C5 H2 H2I sing 167 n n C8 H3 H2I sing 168 n n C8 H4 H2I sing 169 n n C10 H5 H2I sing 170 n n C13 H6 H2I sing 171 n n C15 H7 H2I sing 172 n n O1 H8 H2I sing 173 n n C2 H9 H2I sing 174 n n C3 H10 H2I sing 175 n n C11 H11 H2I sing 176 n n O2 H12 H2I sing 177 n n C14 H13 H2I sing 178 n n O4 H14 H2I sing 179 n n O6 H15 H2I sing 180 n n # _atom_sites.entry_id 8PUP _atom_sites.fract_transf_matrix[1][1] 0.013523 _atom_sites.fract_transf_matrix[1][2] 0.007807 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015615 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007898 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MN A 1 201 1 MN MN . C 3 MG A 1 202 2 MG MG . D 4 EDO A 1 203 1 EDO EDO . E 4 EDO A 1 204 2 EDO EDO . F 4 EDO A 1 205 3 EDO EDO . G 4 EDO A 1 206 4 EDO EDO . H 4 EDO A 1 207 5 EDO EDO . I 5 H2I A 1 208 1 H2I LIG . J 6 HOH A 1 301 62 HOH HOH . J 6 HOH A 2 302 63 HOH HOH . J 6 HOH A 3 303 23 HOH HOH . J 6 HOH A 4 304 15 HOH HOH . J 6 HOH A 5 305 71 HOH HOH . J 6 HOH A 6 306 35 HOH HOH . J 6 HOH A 7 307 14 HOH HOH . J 6 HOH A 8 308 61 HOH HOH . J 6 HOH A 9 309 2 HOH HOH . J 6 HOH A 10 310 38 HOH HOH . J 6 HOH A 11 311 30 HOH HOH . J 6 HOH A 12 312 16 HOH HOH . J 6 HOH A 13 313 49 HOH HOH . J 6 HOH A 14 314 46 HOH HOH . J 6 HOH A 15 315 53 HOH HOH . J 6 HOH A 16 316 13 HOH HOH . J 6 HOH A 17 317 3 HOH HOH . J 6 HOH A 18 318 22 HOH HOH . J 6 HOH A 19 319 1 HOH HOH . J 6 HOH A 20 320 52 HOH HOH . J 6 HOH A 21 321 45 HOH HOH . J 6 HOH A 22 322 67 HOH HOH . J 6 HOH A 23 323 40 HOH HOH . J 6 HOH A 24 324 19 HOH HOH . J 6 HOH A 25 325 43 HOH HOH . J 6 HOH A 26 326 51 HOH HOH . J 6 HOH A 27 327 8 HOH HOH . J 6 HOH A 28 328 17 HOH HOH . J 6 HOH A 29 329 10 HOH HOH . J 6 HOH A 30 330 66 HOH HOH . J 6 HOH A 31 331 25 HOH HOH . J 6 HOH A 32 332 20 HOH HOH . J 6 HOH A 33 333 12 HOH HOH . J 6 HOH A 34 334 11 HOH HOH . J 6 HOH A 35 335 21 HOH HOH . J 6 HOH A 36 336 59 HOH HOH . J 6 HOH A 37 337 9 HOH HOH . J 6 HOH A 38 338 26 HOH HOH . J 6 HOH A 39 339 24 HOH HOH . J 6 HOH A 40 340 5 HOH HOH . J 6 HOH A 41 341 44 HOH HOH . J 6 HOH A 42 342 27 HOH HOH . J 6 HOH A 43 343 4 HOH HOH . J 6 HOH A 44 344 70 HOH HOH . J 6 HOH A 45 345 7 HOH HOH . J 6 HOH A 46 346 58 HOH HOH . J 6 HOH A 47 347 6 HOH HOH . J 6 HOH A 48 348 48 HOH HOH . J 6 HOH A 49 349 47 HOH HOH . J 6 HOH A 50 350 56 HOH HOH . J 6 HOH A 51 351 65 HOH HOH . J 6 HOH A 52 352 32 HOH HOH . J 6 HOH A 53 353 42 HOH HOH . J 6 HOH A 54 354 69 HOH HOH . J 6 HOH A 55 355 50 HOH HOH . J 6 HOH A 56 356 29 HOH HOH . J 6 HOH A 57 357 54 HOH HOH . J 6 HOH A 58 358 37 HOH HOH . J 6 HOH A 59 359 39 HOH HOH . J 6 HOH A 60 360 33 HOH HOH . J 6 HOH A 61 361 28 HOH HOH . J 6 HOH A 62 362 57 HOH HOH . J 6 HOH A 63 363 36 HOH HOH . J 6 HOH A 64 364 41 HOH HOH . J 6 HOH A 65 365 31 HOH HOH . J 6 HOH A 66 366 18 HOH HOH . J 6 HOH A 67 367 68 HOH HOH . J 6 HOH A 68 368 34 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H2I . . . I 5 32.748 14.85 5.154 1 52.04 ? N1 H2I 208 A 1 HETATM 2 C C4 H2I . . . I 5 28.017 16.411 5.246 1 49.75 ? C4 H2I 208 A 1 HETATM 3 C C5 H2I . . . I 5 29.49 16.349 5.374 1 48.63 ? C5 H2I 208 A 1 HETATM 4 C C6 H2I . . . I 5 30.461 15.642 4.768 1 50.1 ? C6 H2I 208 A 1 HETATM 5 C C7 H2I . . . I 5 31.81 15.76 5.391 1 56.86 ? C7 H2I 208 A 1 HETATM 6 C C8 H2I . . . I 5 34.086 14.971 5.726 1 56.66 ? C8 H2I 208 A 1 HETATM 7 C C10 H2I . . . I 5 33.627 13.413 7.67 1 46.53 ? C10 H2I 208 A 1 HETATM 8 C C13 H2I . . . I 5 35.161 14.948 9.376 1 47.9 ? C13 H2I 208 A 1 HETATM 9 C C15 H2I . . . I 5 30.3 14.803 3.645 1 46.48 ? C15 H2I 208 A 1 HETATM 10 C C17 H2I . . . I 5 27.74 14.839 3.219 1 39.03 ? C17 H2I 208 A 1 HETATM 11 O O1 H2I . . . I 5 23.908 16.959 5.492 1 43.64 ? O1 H2I 208 A 1 HETATM 12 C C1 H2I . . . I 5 25.264 16.796 5.422 1 40.74 ? C1 H2I 208 A 1 HETATM 13 C C2 H2I . . . I 5 26.095 17.438 6.316 1 47.5 ? C2 H2I 208 A 1 HETATM 14 C C3 H2I . . . I 5 27.458 17.266 6.224 1 50.92 ? C3 H2I 208 A 1 HETATM 15 C C9 H2I . . . I 5 34.218 14.57 7.18 1 49.08 ? C9 H2I 208 A 1 HETATM 16 C C11 H2I . . . I 5 33.816 13.002 8.983 1 41.03 ? C11 H2I 208 A 1 HETATM 17 C C12 H2I . . . I 5 34.589 13.772 9.838 1 43.71 ? C12 H2I 208 A 1 HETATM 18 O O2 H2I . . . I 5 34.806 13.388 11.137 1 42.26 ? O2 H2I 208 A 1 HETATM 19 C C14 H2I . . . I 5 34.995 15.322 8.053 1 50.84 ? C14 H2I 208 A 1 HETATM 20 O O3 H2I . . . I 5 32.07 16.729 6.108 1 59.14 ? O3 H2I 208 A 1 HETATM 21 C C16 H2I . . . I 5 29.126 14.454 2.987 1 44.95 ? C16 H2I 208 A 1 HETATM 22 O O4 H2I . . . I 5 29.191 13.58 1.897 1 40 ? O4 H2I 208 A 1 HETATM 23 O O5 H2I . . . I 5 26.976 14.349 2.407 1 38.13 ? O5 H2I 208 A 1 HETATM 24 C C18 H2I . . . I 5 27.192 15.748 4.308 1 45.68 ? C18 H2I 208 A 1 HETATM 25 C C19 H2I . . . I 5 25.784 15.944 4.435 1 35.93 ? C19 H2I 208 A 1 HETATM 26 O O6 H2I . . . I 5 24.776 15.39 3.687 1 39.53 ? O6 H2I 208 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 341 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #