data_8PUR # _model_server_result.job_id VBxDyY71PLy2CW3gesvVkA _model_server_result.datetime_utc '2024-11-16 22:46:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pur # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":201}' # _entry.id 8PUR # _exptl.entry_id 8PUR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.01 _cell.angle_gamma 90 _cell.entry_id 8PUR _cell.length_a 108.29 _cell.length_b 63.06 _cell.length_c 54.75 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PUR _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 88.660434 0 51.110103 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 87 A HIS 87 1_555 C FE HEM . A HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc2 B NE2 HIS 92 B HIS 92 1_555 D FE HEM . B HEM 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8PUR _atom_sites.fract_transf_matrix[1][1] 0.009234 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003547 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015858 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019566 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 HEM A 1 201 143 HEM HEM . D 3 HEM B 1 201 147 HEM HEM . E 4 HOH A 1 301 19 HOH HOH . E 4 HOH A 2 302 50 HOH HOH . E 4 HOH A 3 303 55 HOH HOH . E 4 HOH A 4 304 5 HOH HOH . E 4 HOH A 5 305 27 HOH HOH . E 4 HOH A 6 306 49 HOH HOH . E 4 HOH A 7 307 41 HOH HOH . E 4 HOH A 8 308 31 HOH HOH . E 4 HOH A 9 309 51 HOH HOH . E 4 HOH A 10 310 17 HOH HOH . E 4 HOH A 11 311 7 HOH HOH . E 4 HOH A 12 312 54 HOH HOH . E 4 HOH A 13 313 52 HOH HOH . E 4 HOH A 14 314 33 HOH HOH . E 4 HOH A 15 315 4 HOH HOH . E 4 HOH A 16 316 28 HOH HOH . E 4 HOH A 17 317 26 HOH HOH . E 4 HOH A 18 318 1 HOH HOH . E 4 HOH A 19 319 61 HOH HOH . E 4 HOH A 20 320 66 HOH HOH . E 4 HOH A 21 321 16 HOH HOH . E 4 HOH A 22 322 44 HOH HOH . E 4 HOH A 23 323 9 HOH HOH . E 4 HOH A 24 324 29 HOH HOH . E 4 HOH A 25 325 53 HOH HOH . E 4 HOH A 26 326 43 HOH HOH . E 4 HOH A 27 327 48 HOH HOH . E 4 HOH A 28 328 57 HOH HOH . E 4 HOH A 29 329 46 HOH HOH . E 4 HOH A 30 330 30 HOH HOH . E 4 HOH A 31 331 18 HOH HOH . E 4 HOH A 32 332 12 HOH HOH . E 4 HOH A 33 333 62 HOH HOH . E 4 HOH A 34 334 10 HOH HOH . E 4 HOH A 35 335 63 HOH HOH . E 4 HOH A 36 336 25 HOH HOH . E 4 HOH A 37 337 3 HOH HOH . E 4 HOH A 38 338 67 HOH HOH . E 4 HOH A 39 339 2 HOH HOH . E 4 HOH A 40 340 42 HOH HOH . F 4 HOH B 1 301 38 HOH HOH . F 4 HOH B 2 302 39 HOH HOH . F 4 HOH B 3 303 47 HOH HOH . F 4 HOH B 4 304 22 HOH HOH . F 4 HOH B 5 305 69 HOH HOH . F 4 HOH B 6 306 70 HOH HOH . F 4 HOH B 7 307 6 HOH HOH . F 4 HOH B 8 308 35 HOH HOH . F 4 HOH B 9 309 32 HOH HOH . F 4 HOH B 10 310 23 HOH HOH . F 4 HOH B 11 311 20 HOH HOH . F 4 HOH B 12 312 45 HOH HOH . F 4 HOH B 13 313 8 HOH HOH . F 4 HOH B 14 314 59 HOH HOH . F 4 HOH B 15 315 34 HOH HOH . F 4 HOH B 16 316 21 HOH HOH . F 4 HOH B 17 317 14 HOH HOH . F 4 HOH B 18 318 60 HOH HOH . F 4 HOH B 19 319 24 HOH HOH . F 4 HOH B 20 320 64 HOH HOH . F 4 HOH B 21 321 13 HOH HOH . F 4 HOH B 22 322 65 HOH HOH . F 4 HOH B 23 323 68 HOH HOH . F 4 HOH B 24 324 58 HOH HOH . F 4 HOH B 25 325 56 HOH HOH . F 4 HOH B 26 326 15 HOH HOH . F 4 HOH B 27 327 11 HOH HOH . F 4 HOH B 28 328 36 HOH HOH . F 4 HOH B 29 329 40 HOH HOH . F 4 HOH B 30 330 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . D 3 31.23 11.004 41.046 1 65.69 0 CHA HEM 201 B 1 HETATM 2 C CHB HEM . . . D 3 30.596 12.395 36.425 1 66.51 0 CHB HEM 201 B 1 HETATM 3 C CHC HEM . . . D 3 33.043 8.523 34.91 1 63.36 0 CHC HEM 201 B 1 HETATM 4 C CHD HEM . . . D 3 33.312 6.954 39.45 1 66.81 0 CHD HEM 201 B 1 HETATM 5 C C1A HEM . . . D 3 30.869 11.693 39.871 1 67.29 0 C1A HEM 201 B 1 HETATM 6 C C2A HEM . . . D 3 29.991 12.791 39.883 1 69.16 0 C2A HEM 201 B 1 HETATM 7 C C3A HEM . . . D 3 29.809 13.197 38.623 1 69.04 0 C3A HEM 201 B 1 HETATM 8 C C4A HEM . . . D 3 30.521 12.324 37.789 1 64.48 0 C4A HEM 201 B 1 HETATM 9 C CMA HEM . . . D 3 28.88 14.37 38.273 1 77.93 0 CMA HEM 201 B 1 HETATM 10 C CAA HEM . . . D 3 29.33 13.427 41.133 1 76.89 0 CAA HEM 201 B 1 HETATM 11 C CBA HEM . . . D 3 30.277 14.394 41.78 1 99.09 0 CBA HEM 201 B 1 HETATM 12 C CGA HEM . . . D 3 29.561 15.154 42.887 1 107.37 0 CGA HEM 201 B 1 HETATM 13 O O1A HEM . . . D 3 30.008 16.277 43.103 1 94.46 0 O1A HEM 201 B 1 HETATM 14 O O2A HEM . . . D 3 28.58 14.697 43.536 1 97.28 0 O2A HEM 201 B 1 HETATM 15 C C1B HEM . . . D 3 31.206 11.476 35.577 1 67.65 0 C1B HEM 201 B 1 HETATM 16 C C2B HEM . . . D 3 31.197 11.549 34.12 1 59.69 0 C2B HEM 201 B 1 HETATM 17 C C3B HEM . . . D 3 31.906 10.469 33.634 1 66.48 0 C3B HEM 201 B 1 HETATM 18 C C4B HEM . . . D 3 32.358 9.727 34.897 1 63.97 0 C4B HEM 201 B 1 HETATM 19 C CMB HEM . . . D 3 30.513 12.658 33.308 1 73.55 0 CMB HEM 201 B 1 HETATM 20 C CAB HEM . . . D 3 32.227 9.964 32.212 1 73.83 0 CAB HEM 201 B 1 HETATM 21 C CBB HEM . . . D 3 31.66 10.356 31.113 1 92.49 0 CBB HEM 201 B 1 HETATM 22 C C1C HEM . . . D 3 33.292 7.668 35.984 1 63.44 0 C1C HEM 201 B 1 HETATM 23 C C2C HEM . . . D 3 33.859 6.361 35.906 1 68.02 0 C2C HEM 201 B 1 HETATM 24 C C3C HEM . . . D 3 33.928 5.909 37.214 1 63.96 0 C3C HEM 201 B 1 HETATM 25 C C4C HEM . . . D 3 33.446 6.987 38.072 1 67.46 0 C4C HEM 201 B 1 HETATM 26 C CMC HEM . . . D 3 34.215 5.577 34.635 1 64.56 0 CMC HEM 201 B 1 HETATM 27 C CAC HEM . . . D 3 34.413 4.593 37.738 1 70.24 0 CAC HEM 201 B 1 HETATM 28 C CBC HEM . . . D 3 34.859 3.506 37.108 1 80.62 0 CBC HEM 201 B 1 HETATM 29 C C1D HEM . . . D 3 32.723 7.924 40.238 1 65.14 0 C1D HEM 201 B 1 HETATM 30 C C2D HEM . . . D 3 32.594 7.745 41.705 1 67.47 0 C2D HEM 201 B 1 HETATM 31 C C3D HEM . . . D 3 32.047 8.897 42.135 1 65.07 0 C3D HEM 201 B 1 HETATM 32 C C4D HEM . . . D 3 31.815 9.748 40.955 1 67.39 0 C4D HEM 201 B 1 HETATM 33 C CMD HEM . . . D 3 33.038 6.545 42.57 1 70.51 0 CMD HEM 201 B 1 HETATM 34 C CAD HEM . . . D 3 31.697 9.229 43.602 1 71.89 0 CAD HEM 201 B 1 HETATM 35 C CBD HEM . . . D 3 30.319 8.626 43.888 1 80.42 0 CBD HEM 201 B 1 HETATM 36 C CGD HEM . . . D 3 29.814 9.043 45.268 1 97.64 0 CGD HEM 201 B 1 HETATM 37 O O1D HEM . . . D 3 28.803 8.473 45.651 1 91.55 0 O1D HEM 201 B 1 HETATM 38 O O2D HEM . . . D 3 30.336 9.944 45.982 1 112.1 0 O2D HEM 201 B 1 HETATM 39 N NA HEM . . . D 3 31.194 11.365 38.543 1 63.73 0 NA HEM 201 B 1 HETATM 40 N NB HEM . . . D 3 31.848 10.357 35.939 1 63.97 0 NB HEM 201 B 1 HETATM 41 N NC HEM . . . D 3 33.038 8.03 37.309 1 63.65 0 NC HEM 201 B 1 HETATM 42 N ND HEM . . . D 3 32.261 9.135 39.826 1 68.63 0 ND HEM 201 B 1 HETATM 43 FE FE HEM . . . D 3 32.28 9.825 37.955 1 66.53 0 FE HEM 201 B 1 HETATM 44 H HHB HEM . . . D 3 30.117 13.135 36.019 1 66.46 0 HHB HEM 201 B 1 HETATM 45 H HHC HEM . . . D 3 33.297 8.183 34.039 1 63.88 0 HHC HEM 201 B 1 HETATM 46 H HHD HEM . . . D 3 33.614 6.153 39.908 1 66.64 0 HHD HEM 201 B 1 HETATM 47 H HMA HEM . . . D 3 29.14 15.167 38.797 1 75.29 0 HMA HEM 201 B 1 HETATM 48 H HMAA HEM . . . D 3 28.913 14.597 37.311 1 75.22 0 HMAA HEM 201 B 1 HETATM 49 H HMAB HEM . . . D 3 27.952 14.122 38.511 1 75.23 0 HMAB HEM 201 B 1 HETATM 50 H HAA HEM . . . D 3 29.092 12.72 41.783 1 79.63 0 HAA HEM 201 B 1 HETATM 51 H HAAA HEM . . . D 3 28.481 13.882 40.911 1 79.81 0 HAAA HEM 201 B 1 HETATM 52 H HBA HEM . . . D 3 30.61 15.028 41.099 1 94.97 0 HBA HEM 201 B 1 HETATM 53 H HBAA HEM . . . D 3 31.04 13.896 42.165 1 95.12 0 HBAA HEM 201 B 1 HETATM 54 H HMB HEM . . . D 3 30.349 13.49 33.816 1 69.36 0 HMB HEM 201 B 1 HETATM 55 H HMBA HEM . . . D 3 31.109 12.905 32.558 1 69.32 0 HMBA HEM 201 B 1 HETATM 56 H HMBB HEM . . . D 3 29.658 12.319 32.946 1 69.26 0 HMBB HEM 201 B 1 HETATM 57 H HAB HEM . . . D 3 32.772 9.167 32.098 1 76.09 0 HAB HEM 201 B 1 HETATM 58 H HBB HEM . . . D 3 31.921 9.928 30.277 1 85.97 0 HBB HEM 201 B 1 HETATM 59 H HBBA HEM . . . D 3 31.047 11.109 31.079 1 85.75 0 HBBA HEM 201 B 1 HETATM 60 H HMC HEM . . . D 3 34.061 6.078 33.798 1 65.54 0 HMC HEM 201 B 1 HETATM 61 H HMCA HEM . . . D 3 35.172 5.332 34.682 1 65.63 0 HMCA HEM 201 B 1 HETATM 62 H HMCB HEM . . . D 3 33.673 4.751 34.609 1 65.63 0 HMCB HEM 201 B 1 HETATM 63 H HAC HEM . . . D 3 34.392 4.446 38.7 1 71.11 0 HAC HEM 201 B 1 HETATM 64 H HBC HEM . . . D 3 35.117 2.725 37.628 1 77.05 0 HBC HEM 201 B 1 HETATM 65 H HBCA HEM . . . D 3 34.946 3.445 36.141 1 76.91 0 HBCA HEM 201 B 1 HETATM 66 H HMD HEM . . . D 3 32.89 5.699 42.08 1 69.6 0 HMD HEM 201 B 1 HETATM 67 H HMDA HEM . . . D 3 33.996 6.636 42.798 1 69.62 0 HMDA HEM 201 B 1 HETATM 68 H HMDB HEM . . . D 3 32.504 6.511 43.401 1 69.63 0 HMDB HEM 201 B 1 HETATM 69 H HAD HEM . . . D 3 32.36 8.807 44.202 1 72.13 0 HAD HEM 201 B 1 HETATM 70 H HADA HEM . . . D 3 31.717 10.205 43.76 1 72.2 0 HADA HEM 201 B 1 HETATM 71 H HBD HEM . . . D 3 29.666 8.978 43.235 1 81.87 0 HBD HEM 201 B 1 HETATM 72 H HBDA HEM . . . D 3 30.361 7.64 43.826 1 81.92 0 HBDA HEM 201 B 1 HETATM 73 H HHA HEM . . . D 3 30.957 11.335 41.918 1 66.69 0 HHA HEM 201 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 73 #