data_8PUY # _model_server_result.job_id hS9MYDe_9FwiPY2qVURGyw _model_server_result.datetime_utc '2025-06-29 05:13:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8puy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8PUY # _exptl.entry_id 8PUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 326.433 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[3-[(3-pentoxyphenyl)amino]phenyl]propanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.51 _cell.angle_gamma 90 _cell.entry_id 8PUY _cell.length_a 122.69 _cell.length_b 61.598 _cell.length_c 79.699 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 165 B CYS 380 1_555 C C22 F3Y . B F3Y 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? covale ? covale2 B SG CYS 165 A CYS 380 1_555 D C1 MYR . A MYR 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? # _chem_comp.formula 'C20 H26 N2 O2' _chem_comp.formula_weight 326.433 _chem_comp.id F3Y _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[3-[(3-pentoxyphenyl)amino]phenyl]propanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 F3Y sing 83 n n C2 C3 F3Y sing 84 n n C3 C4 F3Y sing 85 n n C4 C5 F3Y sing 86 n n C22 C21 F3Y sing 87 n n C5 O6 F3Y sing 88 n n C21 C19 F3Y sing 89 n n O6 C7 F3Y sing 90 n n C19 N18 F3Y sing 91 n n C19 O20 F3Y doub 92 n n N18 C17 F3Y sing 93 n n C7 C8 F3Y doub 94 n y C7 C24 F3Y sing 95 n y C8 C9 F3Y sing 96 n y C24 C11 F3Y doub 97 n y C9 C10 F3Y doub 98 n y C17 C23 F3Y doub 99 n y C17 C16 F3Y sing 100 n y C23 C13 F3Y sing 101 n y C11 C10 F3Y sing 102 n y C11 N12 F3Y sing 103 n n C16 C15 F3Y doub 104 n y N12 C13 F3Y sing 105 n n C13 C14 F3Y doub 106 n y C15 C14 F3Y sing 107 n y C1 H1 F3Y sing 108 n n C1 H2 F3Y sing 109 n n C1 H3 F3Y sing 110 n n C2 H4 F3Y sing 111 n n C2 H5 F3Y sing 112 n n C3 H6 F3Y sing 113 n n C3 H7 F3Y sing 114 n n C4 H8 F3Y sing 115 n n C4 H9 F3Y sing 116 n n C5 H10 F3Y sing 117 n n C5 H11 F3Y sing 118 n n C8 H12 F3Y sing 119 n n C9 H13 F3Y sing 120 n n C10 H14 F3Y sing 121 n n N12 H15 F3Y sing 122 n n C14 H16 F3Y sing 123 n n C15 H17 F3Y sing 124 n n C16 H18 F3Y sing 125 n n N18 H19 F3Y sing 126 n n C21 H20 F3Y sing 127 n n C21 H21 F3Y sing 128 n n C22 H22 F3Y sing 129 n n C22 H23 F3Y sing 130 n n C22 H24 F3Y sing 131 n n C23 H25 F3Y sing 132 n n C24 H26 F3Y sing 133 n n # _atom_sites.entry_id 8PUY _atom_sites.fract_transf_matrix[1][1] 0.008151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004245 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F3Y B 1 501 1 F3Y 258 . D 3 MYR A 1 501 1 MYR MYR . E 4 HOH B 1 601 8 HOH HOH . E 4 HOH B 2 602 5 HOH HOH . E 4 HOH B 3 603 16 HOH HOH . E 4 HOH B 4 604 11 HOH HOH . E 4 HOH B 5 605 7 HOH HOH . E 4 HOH B 6 606 1 HOH HOH . E 4 HOH B 7 607 2 HOH HOH . F 4 HOH A 1 601 15 HOH HOH . F 4 HOH A 2 602 13 HOH HOH . F 4 HOH A 3 603 9 HOH HOH . F 4 HOH A 4 604 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 F3Y . . . C 2 -35.998 -10.2 10.542 1 67.82 ? C1 F3Y 501 B 1 HETATM 2 C C2 F3Y . . . C 2 -36.342 -10.143 12.039 1 77.95 ? C2 F3Y 501 B 1 HETATM 3 C C3 F3Y . . . C 2 -36.564 -8.738 12.548 1 75.6 ? C3 F3Y 501 B 1 HETATM 4 C C4 F3Y . . . C 2 -37.467 -8.668 13.761 1 73.73 ? C4 F3Y 501 B 1 HETATM 5 C C5 F3Y . . . C 2 -36.714 -8.824 15.045 1 67.69 ? C5 F3Y 501 B 1 HETATM 6 O O6 F3Y . . . C 2 -36.962 -7.693 15.906 1 61.46 ? O6 F3Y 501 B 1 HETATM 7 C C7 F3Y . . . C 2 -35.961 -7.309 16.756 1 62.97 ? C7 F3Y 501 B 1 HETATM 8 C C8 F3Y . . . C 2 -34.781 -8.039 16.846 1 67.81 ? C8 F3Y 501 B 1 HETATM 9 C C9 F3Y . . . C 2 -33.759 -7.591 17.667 1 73.36 ? C9 F3Y 501 B 1 HETATM 10 C C10 F3Y . . . C 2 -33.909 -6.427 18.395 1 75.81 ? C10 F3Y 501 B 1 HETATM 11 C C11 F3Y . . . C 2 -35.089 -5.702 18.304 1 78.26 ? C11 F3Y 501 B 1 HETATM 12 N N12 F3Y . . . C 2 -35.13 -4.575 19.125 1 88.87 ? N12 F3Y 501 B 1 HETATM 13 C C13 F3Y . . . C 2 -36.027 -3.512 19.134 1 95.15 ? C13 F3Y 501 B 1 HETATM 14 C C14 F3Y . . . C 2 -36.665 -3.106 20.306 1 107.97 ? C14 F3Y 501 B 1 HETATM 15 C C15 F3Y . . . C 2 -37.525 -2.022 20.281 1 113.6 ? C15 F3Y 501 B 1 HETATM 16 C C16 F3Y . . . C 2 -37.754 -1.339 19.097 1 110.21 ? C16 F3Y 501 B 1 HETATM 17 C C17 F3Y . . . C 2 -37.116 -1.742 17.927 1 98.36 ? C17 F3Y 501 B 1 HETATM 18 N N18 F3Y . . . C 2 -37.254 -1.025 16.724 1 100.72 ? N18 F3Y 501 B 1 HETATM 19 C C19 F3Y . . . C 2 -37.984 0.089 16.497 1 100.49 ? C19 F3Y 501 B 1 HETATM 20 O O20 F3Y . . . C 2 -38.689 0.657 17.331 1 107.92 ? O20 F3Y 501 B 1 HETATM 21 C C21 F3Y . . . C 2 -37.915 0.529 15.071 1 85.34 ? C21 F3Y 501 B 1 HETATM 22 C C22 F3Y . . . C 2 -38.932 -0.197 14.241 1 85.81 ? C22 F3Y 501 B 1 HETATM 23 C C23 F3Y . . . C 2 -36.254 -2.831 17.946 1 91.38 ? C23 F3Y 501 B 1 HETATM 24 C C24 F3Y . . . C 2 -36.125 -6.142 17.481 1 64.7 ? C24 F3Y 501 B 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 373 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 24 #