data_8PUY # _model_server_result.job_id FlXCJg0B9CrnHfXUxMRphQ _model_server_result.datetime_utc '2025-06-29 04:55:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8puy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 8PUY # _exptl.entry_id 8PUY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.371 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MYRISTIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 117.51 _cell.angle_gamma 90 _cell.entry_id 8PUY _cell.length_a 122.69 _cell.length_b 61.598 _cell.length_c 79.699 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PUY _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 165 B CYS 380 1_555 C C22 F3Y . B F3Y 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.595 ? covale ? covale2 B SG CYS 165 A CYS 380 1_555 D C1 MYR . A MYR 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? # _chem_comp.formula 'C14 H28 O2' _chem_comp.formula_weight 228.371 _chem_comp.id MYR _chem_comp.mon_nstd_flag . _chem_comp.name 'MYRISTIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 MYR doub 288 n n C1 O2 MYR sing 289 n n C1 C2 MYR sing 290 n n O2 HO2 MYR sing 291 n n C2 C3 MYR sing 292 n n C2 H21 MYR sing 293 n n C2 H22 MYR sing 294 n n C3 C4 MYR sing 295 n n C3 H31 MYR sing 296 n n C3 H32 MYR sing 297 n n C4 C5 MYR sing 298 n n C4 H41 MYR sing 299 n n C4 H42 MYR sing 300 n n C5 C6 MYR sing 301 n n C5 H51 MYR sing 302 n n C5 H52 MYR sing 303 n n C6 C7 MYR sing 304 n n C6 H61 MYR sing 305 n n C6 H62 MYR sing 306 n n C7 C8 MYR sing 307 n n C7 H71 MYR sing 308 n n C7 H72 MYR sing 309 n n C8 C9 MYR sing 310 n n C8 H81 MYR sing 311 n n C8 H82 MYR sing 312 n n C9 C10 MYR sing 313 n n C9 H91 MYR sing 314 n n C9 H92 MYR sing 315 n n C10 C11 MYR sing 316 n n C10 H101 MYR sing 317 n n C10 H102 MYR sing 318 n n C11 C12 MYR sing 319 n n C11 H111 MYR sing 320 n n C11 H112 MYR sing 321 n n C12 C13 MYR sing 322 n n C12 H121 MYR sing 323 n n C12 H122 MYR sing 324 n n C13 C14 MYR sing 325 n n C13 H131 MYR sing 326 n n C13 H132 MYR sing 327 n n C14 H141 MYR sing 328 n n C14 H142 MYR sing 329 n n C14 H143 MYR sing 330 n n # _atom_sites.entry_id 8PUY _atom_sites.fract_transf_matrix[1][1] 0.008151 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004245 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014147 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 F3Y B 1 501 1 F3Y 258 . D 3 MYR A 1 501 1 MYR MYR . E 4 HOH B 1 601 8 HOH HOH . E 4 HOH B 2 602 5 HOH HOH . E 4 HOH B 3 603 16 HOH HOH . E 4 HOH B 4 604 11 HOH HOH . E 4 HOH B 5 605 7 HOH HOH . E 4 HOH B 6 606 1 HOH HOH . E 4 HOH B 7 607 2 HOH HOH . F 4 HOH A 1 601 15 HOH HOH . F 4 HOH A 2 602 13 HOH HOH . F 4 HOH A 3 603 9 HOH HOH . F 4 HOH A 4 604 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MYR . . . D 3 -32.213 12.842 20.699 1 114.66 ? C1 MYR 501 A 1 HETATM 2 O O1 MYR . . . D 3 -31.21 12.563 21.393 1 125.93 ? O1 MYR 501 A 1 HETATM 3 C C2 MYR . . . D 3 -33.36 13.559 21.389 1 98 ? C2 MYR 501 A 1 HETATM 4 C C3 MYR . . . D 3 -33.284 15.044 21.396 1 84.66 ? C3 MYR 501 A 1 HETATM 5 C C4 MYR . . . D 3 -34.65 15.675 21.31 1 83.32 ? C4 MYR 501 A 1 HETATM 6 C C5 MYR . . . D 3 -34.647 17.163 21.484 1 81.46 ? C5 MYR 501 A 1 HETATM 7 C C6 MYR . . . D 3 -33.85 17.893 20.436 1 80.68 ? C6 MYR 501 A 1 HETATM 8 C C7 MYR . . . D 3 -34.086 19.375 20.423 1 73.34 ? C7 MYR 501 A 1 HETATM 9 C C8 MYR . . . D 3 -33.504 20.089 19.251 1 71.43 ? C8 MYR 501 A 1 HETATM 10 C C9 MYR . . . D 3 -32.034 19.836 19.025 1 71.59 ? C9 MYR 501 A 1 HETATM 11 C C10 MYR . . . D 3 -31.254 21.085 18.741 1 73.55 ? C10 MYR 501 A 1 HETATM 12 C C11 MYR . . . D 3 -30.18 20.954 17.711 1 77.27 ? C11 MYR 501 A 1 HETATM 13 C C12 MYR . . . D 3 -30.691 20.948 16.293 1 75.87 ? C12 MYR 501 A 1 HETATM 14 C C13 MYR . . . D 3 -30.192 22.064 15.434 1 77.92 ? C13 MYR 501 A 1 HETATM 15 C C14 MYR . . . D 3 -30.392 21.811 13.951 1 76.01 ? C14 MYR 501 A 1 # _model_server_stats.io_time_ms 57 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 15 #