data_8PVB
#
_model_server_result.job_id            GLv6f0bLnjY1qsmP44BkIw 
_model_server_result.datetime_utc      '2024-10-19 12:29:13' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pvb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":5401}' 
#
_entry.id    8PVB 
#
_exptl.entry_id    8PVB 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              226.441 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            HEXADECANE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PVB 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PVB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    decameric 
_pdbx_struct_assembly.oligomeric_count      10 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2,3,4,5 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'point symmetry operation' ? ? 0.309017 -0.951057 0 0.951057 0.309017 0 0 0 1 214.81818 -34.02386 0 
3 'point symmetry operation' ? ? -0.809017 -0.587785 0 0.587785 -0.809017 0 0 0 1 313.55926 159.76642 0 
4 'point symmetry operation' ? ? -0.809017 0.587785 0 -0.587785 -0.809017 0 0 0 1 159.76642 313.55926 0 
5 'point symmetry operation' ? ? 0.309017 0.951057 0 -0.951057 0.309017 0 0 0 1 -34.02386 214.81818 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      5 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_pdbx_entity_branch.entity_id
_pdbx_entity_branch.type
3 oligosaccharide 
4 oligosaccharide 
#
loop_
_pdbx_entity_branch_link.link_id
_pdbx_entity_branch_link.details
_pdbx_entity_branch_link.entity_id
_pdbx_entity_branch_link.entity_branch_list_num_1
_pdbx_entity_branch_link.entity_branch_list_num_2
_pdbx_entity_branch_link.comp_id_1
_pdbx_entity_branch_link.comp_id_2
_pdbx_entity_branch_link.atom_id_1
_pdbx_entity_branch_link.leaving_atom_id_1
_pdbx_entity_branch_link.atom_stereo_config_1
_pdbx_entity_branch_link.atom_id_2
_pdbx_entity_branch_link.leaving_atom_id_2
_pdbx_entity_branch_link.atom_stereo_config_2
_pdbx_entity_branch_link.value_order
1 ? 3 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
2 ? 4 2 1 NAG NAG C1 O1 . O4 HO4 . sing 
3 ? 4 3 2 BMA NAG C1 O1 . O4 HO4 . sing 
4 ? 4 4 3 MAN BMA C1 O1 . O3 HO3 . sing 
5 ? 4 5 3 MAN BMA C1 O1 . O6 HO6 . sing 
#
loop_
_pdbx_branch_scheme.entity_id
_pdbx_branch_scheme.hetero
_pdbx_branch_scheme.asym_id
_pdbx_branch_scheme.mon_id
_pdbx_branch_scheme.num
_pdbx_branch_scheme.pdb_asym_id
_pdbx_branch_scheme.pdb_seq_num
_pdbx_branch_scheme.pdb_mon_id
_pdbx_branch_scheme.auth_asym_id
_pdbx_branch_scheme.auth_seq_num
_pdbx_branch_scheme.auth_mon_id
3 n C NAG 1 B 1 NAG B 1 NAG 
3 n C NAG 2 B 2 NAG B 2 NAG 
4 n D NAG 1 C 1 NAG C 1 NAG 
4 n D NAG 2 C 2 NAG C 2 NAG 
4 n D BMA 3 C 3 BMA C 3 BMA 
4 n D MAN 4 C 4 MAN C 4 MAN 
4 n D MAN 5 C 5 MAN C 5 MAN 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 B SG CYS 409 O CYS 409 1_555 B SG CYS 483 O CYS 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
covale ? covale1 A ND2 ASN 135 A ASN 80 1_555 C C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.38 ? 
covale ? covale2 A ND2 ASN 204 A ASN 149 1_555 D C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.471 ? 
covale ? covale3 C O4 NAG . B NAG 1 1_555 C C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.392 ? 
covale ? covale4 D O4 NAG . C NAG 1 1_555 D C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? 
covale ? covale5 D O4 NAG . C NAG 2 1_555 D C1 BMA . C BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.393 ? 
covale ? covale6 D O3 BMA . C BMA 3 1_555 D C1 MAN . C MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.404 ? 
covale ? covale7 D O6 BMA . C BMA 3 1_555 D C1 MAN . C MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.411 ? 
#
_chem_comp.formula           'C16 H34' 
_chem_comp.formula_weight    226.441 
_chem_comp.id                R16 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              HEXADECANE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C27 C28 R16 sing 401 n n 
C27 H271 R16 sing 402 n n 
C27 H272 R16 sing 403 n n 
C27 H273 R16 sing 404 n n 
C28 C29 R16 sing 405 n n 
C28 H281 R16 sing 406 n n 
C28 H282 R16 sing 407 n n 
C29 C30 R16 sing 408 n n 
C29 H291 R16 sing 409 n n 
C29 H292 R16 sing 410 n n 
C30 C31 R16 sing 411 n n 
C30 H301 R16 sing 412 n n 
C30 H302 R16 sing 413 n n 
C31 C32 R16 sing 414 n n 
C31 H311 R16 sing 415 n n 
C31 H312 R16 sing 416 n n 
C32 C33 R16 sing 417 n n 
C32 H321 R16 sing 418 n n 
C32 H322 R16 sing 419 n n 
C33 C34 R16 sing 420 n n 
C33 H331 R16 sing 421 n n 
C33 H332 R16 sing 422 n n 
C34 C35 R16 sing 423 n n 
C34 H341 R16 sing 424 n n 
C34 H342 R16 sing 425 n n 
C35 C36 R16 sing 426 n n 
C35 H351 R16 sing 427 n n 
C35 H352 R16 sing 428 n n 
C36 C37 R16 sing 429 n n 
C36 H361 R16 sing 430 n n 
C36 H362 R16 sing 431 n n 
C37 C38 R16 sing 432 n n 
C37 H371 R16 sing 433 n n 
C37 H372 R16 sing 434 n n 
C38 C39 R16 sing 435 n n 
C38 H381 R16 sing 436 n n 
C38 H382 R16 sing 437 n n 
C39 C40 R16 sing 438 n n 
C39 H391 R16 sing 439 n n 
C39 H392 R16 sing 440 n n 
C40 C41 R16 sing 441 n n 
C40 H401 R16 sing 442 n n 
C40 H402 R16 sing 443 n n 
C41 C42 R16 sing 444 n n 
C41 H411 R16 sing 445 n n 
C41 H412 R16 sing 446 n n 
C42 H421 R16 sing 447 n n 
C42 H422 R16 sing 448 n n 
C42 H423 R16 sing 449 n n 
#
_atom_sites.entry_id                     8PVB 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 R16 A 1 5401 5401 R16 R16 . 
F 6 D10 A 1 5402 5402 D10 D10 . 
G 6 D10 A 1 5403 5403 D10 D10 . 
H 6 D10 A 1 5404 5404 D10 D10 . 
I 6 D10 A 1 5405 5406 D10 D10 . 
J 7 HSM A 1 5406 5408 HSM HSM . 
K 8 CL A 1 5407 5409 CL CL . 
L 8 CL A 1 5408 5410 CL CL . 
M 9 V8D A 1 5409 5501 V8D V8D . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C27 R16 . . . E 5 128.421 161.628 118.656 1 84.99 ? C27 R16 5401 A 1 
HETATM 2 C C28 R16 . . . E 5 127.262 161.004 117.894 1 84.71 ? C28 R16 5401 A 1 
HETATM 3 C C29 R16 . . . E 5 127.616 159.836 116.969 1 84.67 ? C29 R16 5401 A 1 
HETATM 4 C C30 R16 . . . E 5 127.23 159.97 115.502 1 84.39 ? C30 R16 5401 A 1 
HETATM 5 C C31 R16 . . . E 5 127.8 158.899 114.572 1 83.48 ? C31 R16 5401 A 1 
HETATM 6 C C32 R16 . . . E 5 127.479 159.13 113.102 1 84.75 ? C32 R16 5401 A 1 
HETATM 7 C C33 R16 . . . E 5 127.886 158.023 112.122 1 84.62 ? C33 R16 5401 A 1 
HETATM 8 C C34 R16 . . . E 5 127.119 158.03 110.785 1 84.02 ? C34 R16 5401 A 1 
HETATM 9 C C35 R16 . . . E 5 127.945 157.892 109.517 1 83.97 ? C35 R16 5401 A 1 
HETATM 10 C C36 R16 . . . E 5 127.145 158.006 108.206 1 83.73 ? C36 R16 5401 A 1 
HETATM 11 C C37 R16 . . . E 5 127.514 157.008 107.118 1 83 ? C37 R16 5401 A 1 
HETATM 12 C C38 R16 . . . E 5 127.14 157.408 105.692 1 83.36 ? C38 R16 5401 A 1 
HETATM 13 C C39 R16 . . . E 5 127.711 156.481 104.604 1 83.14 ? C39 R16 5401 A 1 
HETATM 14 C C40 R16 . . . E 5 128.218 157.156 103.333 1 83.42 ? C40 R16 5401 A 1 
HETATM 15 C C41 R16 . . . E 5 127.24 157.206 102.173 1 83.39 ? C41 R16 5401 A 1 
HETATM 16 C C42 R16 . . . E 5 127.617 158.143 101.045 1 84.48 ? C42 R16 5401 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           307 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           16 
#