data_8PVO
#
_model_server_result.job_id            oDb0waw8oemTOcx_0I0j0A 
_model_server_result.datetime_utc      '2024-11-28 15:13:44' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pvo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"DA","auth_seq_id":414}' 
#
_entry.id    8PVO 
#
_exptl.entry_id    8PVO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PVO 
_cell.length_a            127.648 
_cell.length_b            127.648 
_cell.length_c            123.901 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PVO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,G,H,I,J,K,L,M,N,O,P,FA 1 1 
B,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,GA 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 J N N 
? 3 N N N 
? 3 O N N 
? 3 DA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O SER 8 A SER 7 1_555 P NA NA . A NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.624 ? 
metalc ? metalc2 A OH TYR 183 A TYR 182 1_555 P NA NA . A NA 414 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.64 ? 
metalc ? metalc3 P NA NA . A NA 414 1_555 FA O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? 
metalc ? metalc4 B O SER 8 B SER 7 1_555 EA NA NA . B NA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? 
metalc ? metalc5 B OH TYR 183 B TYR 182 1_555 EA NA NA . B NA 415 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.561 ? 
metalc ? metalc6 EA NA NA . B NA 415 1_555 GA O HOH . B HOH 523 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8PVO 
_atom_sites.fract_transf_matrix[1][1]    0.007834 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007834 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008071 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 401 2 SO4 SO4 . 
D 2 SO4 A 1 402 3 SO4 SO4 . 
E 2 SO4 A 1 403 5 SO4 SO4 . 
F 2 SO4 A 1 404 15 SO4 SO4 . 
G 2 SO4 A 1 405 16 SO4 SO4 . 
H 2 SO4 A 1 406 17 SO4 SO4 . 
I 2 SO4 A 1 407 18 SO4 SO4 . 
J 3 EDO A 1 408 345 EDO EDO . 
K 2 SO4 A 1 409 730 SO4 SO4 . 
L 2 SO4 A 1 410 731 SO4 SO4 . 
M 4 FW3 A 1 411 732 FW3 FG1 . 
N 3 EDO A 1 412 733 EDO EDO . 
O 3 EDO A 1 413 734 EDO EDO . 
P 5 NA A 1 414 2 NA NA . 
Q 2 SO4 B 1 401 1 SO4 SO4 . 
R 2 SO4 B 1 402 4 SO4 SO4 . 
S 2 SO4 B 1 403 6 SO4 SO4 . 
T 2 SO4 B 1 404 7 SO4 SO4 . 
U 2 SO4 B 1 405 8 SO4 SO4 . 
V 2 SO4 B 1 406 9 SO4 SO4 . 
W 2 SO4 B 1 407 10 SO4 SO4 . 
X 2 SO4 B 1 408 11 SO4 SO4 . 
Y 2 SO4 B 1 409 12 SO4 SO4 . 
Z 2 SO4 B 1 410 14 SO4 SO4 . 
AA 2 SO4 B 1 411 340 SO4 SO4 . 
BA 2 SO4 B 1 412 341 SO4 SO4 . 
CA 4 FW3 B 1 413 342 FW3 FG1 . 
DA 3 EDO B 1 414 343 EDO EDO . 
EA 5 NA B 1 415 1 NA NA . 
FA 6 HOH A 1 501 203 HOH HOH . 
FA 6 HOH A 2 502 191 HOH HOH . 
FA 6 HOH A 3 503 206 HOH HOH . 
FA 6 HOH A 4 504 46 HOH HOH . 
FA 6 HOH A 5 505 212 HOH HOH . 
FA 6 HOH A 6 506 123 HOH HOH . 
FA 6 HOH A 7 507 207 HOH HOH . 
FA 6 HOH A 8 508 128 HOH HOH . 
FA 6 HOH A 9 509 183 HOH HOH . 
FA 6 HOH A 10 510 109 HOH HOH . 
FA 6 HOH A 11 511 113 HOH HOH . 
FA 6 HOH A 12 512 215 HOH HOH . 
FA 6 HOH A 13 513 89 HOH HOH . 
FA 6 HOH A 14 514 13 HOH HOH . 
FA 6 HOH A 15 515 108 HOH HOH . 
FA 6 HOH A 16 516 172 HOH HOH . 
FA 6 HOH A 17 517 112 HOH HOH . 
FA 6 HOH A 18 518 129 HOH HOH . 
FA 6 HOH A 19 519 184 HOH HOH . 
FA 6 HOH A 20 520 58 HOH HOH . 
FA 6 HOH A 21 521 81 HOH HOH . 
FA 6 HOH A 22 522 75 HOH HOH . 
FA 6 HOH A 23 523 25 HOH HOH . 
FA 6 HOH A 24 524 122 HOH HOH . 
FA 6 HOH A 25 525 24 HOH HOH . 
FA 6 HOH A 26 526 69 HOH HOH . 
FA 6 HOH A 27 527 38 HOH HOH . 
FA 6 HOH A 28 528 94 HOH HOH . 
FA 6 HOH A 29 529 136 HOH HOH . 
FA 6 HOH A 30 530 9 HOH HOH . 
FA 6 HOH A 31 531 125 HOH HOH . 
FA 6 HOH A 32 532 138 HOH HOH . 
FA 6 HOH A 33 533 157 HOH HOH . 
FA 6 HOH A 34 534 92 HOH HOH . 
FA 6 HOH A 35 535 28 HOH HOH . 
FA 6 HOH A 36 536 30 HOH HOH . 
FA 6 HOH A 37 537 150 HOH HOH . 
FA 6 HOH A 38 538 59 HOH HOH . 
FA 6 HOH A 39 539 57 HOH HOH . 
FA 6 HOH A 40 540 140 HOH HOH . 
FA 6 HOH A 41 541 143 HOH HOH . 
FA 6 HOH A 42 542 111 HOH HOH . 
FA 6 HOH A 43 543 19 HOH HOH . 
FA 6 HOH A 44 544 161 HOH HOH . 
FA 6 HOH A 45 545 66 HOH HOH . 
FA 6 HOH A 46 546 53 HOH HOH . 
FA 6 HOH A 47 547 126 HOH HOH . 
FA 6 HOH A 48 548 72 HOH HOH . 
FA 6 HOH A 49 549 48 HOH HOH . 
FA 6 HOH A 50 550 43 HOH HOH . 
FA 6 HOH A 51 551 180 HOH HOH . 
FA 6 HOH A 52 552 119 HOH HOH . 
FA 6 HOH A 53 553 49 HOH HOH . 
FA 6 HOH A 54 554 17 HOH HOH . 
FA 6 HOH A 55 555 208 HOH HOH . 
FA 6 HOH A 56 556 80 HOH HOH . 
FA 6 HOH A 57 557 103 HOH HOH . 
FA 6 HOH A 58 558 152 HOH HOH . 
FA 6 HOH A 59 559 32 HOH HOH . 
FA 6 HOH A 60 560 148 HOH HOH . 
FA 6 HOH A 61 561 85 HOH HOH . 
FA 6 HOH A 62 562 90 HOH HOH . 
FA 6 HOH A 63 563 60 HOH HOH . 
FA 6 HOH A 64 564 29 HOH HOH . 
FA 6 HOH A 65 565 182 HOH HOH . 
FA 6 HOH A 66 566 4 HOH HOH . 
FA 6 HOH A 67 567 62 HOH HOH . 
FA 6 HOH A 68 568 205 HOH HOH . 
FA 6 HOH A 69 569 142 HOH HOH . 
FA 6 HOH A 70 570 185 HOH HOH . 
FA 6 HOH A 71 571 106 HOH HOH . 
FA 6 HOH A 72 572 20 HOH HOH . 
FA 6 HOH A 73 573 84 HOH HOH . 
FA 6 HOH A 74 574 177 HOH HOH . 
FA 6 HOH A 75 575 56 HOH HOH . 
FA 6 HOH A 76 576 178 HOH HOH . 
FA 6 HOH A 77 577 93 HOH HOH . 
GA 6 HOH B 1 501 214 HOH HOH . 
GA 6 HOH B 2 502 216 HOH HOH . 
GA 6 HOH B 3 503 147 HOH HOH . 
GA 6 HOH B 4 504 168 HOH HOH . 
GA 6 HOH B 5 505 210 HOH HOH . 
GA 6 HOH B 6 506 21 HOH HOH . 
GA 6 HOH B 7 507 79 HOH HOH . 
GA 6 HOH B 8 508 23 HOH HOH . 
GA 6 HOH B 9 509 139 HOH HOH . 
GA 6 HOH B 10 510 110 HOH HOH . 
GA 6 HOH B 11 511 55 HOH HOH . 
GA 6 HOH B 12 512 12 HOH HOH . 
GA 6 HOH B 13 513 97 HOH HOH . 
GA 6 HOH B 14 514 61 HOH HOH . 
GA 6 HOH B 15 515 36 HOH HOH . 
GA 6 HOH B 16 516 2 HOH HOH . 
GA 6 HOH B 17 517 40 HOH HOH . 
GA 6 HOH B 18 518 37 HOH HOH . 
GA 6 HOH B 19 519 133 HOH HOH . 
GA 6 HOH B 20 520 31 HOH HOH . 
GA 6 HOH B 21 521 54 HOH HOH . 
GA 6 HOH B 22 522 26 HOH HOH . 
GA 6 HOH B 23 523 51 HOH HOH . 
GA 6 HOH B 24 524 68 HOH HOH . 
GA 6 HOH B 25 525 44 HOH HOH . 
GA 6 HOH B 26 526 131 HOH HOH . 
GA 6 HOH B 27 527 74 HOH HOH . 
GA 6 HOH B 28 528 71 HOH HOH . 
GA 6 HOH B 29 529 22 HOH HOH . 
GA 6 HOH B 30 530 166 HOH HOH . 
GA 6 HOH B 31 531 141 HOH HOH . 
GA 6 HOH B 32 532 135 HOH HOH . 
GA 6 HOH B 33 533 6 HOH HOH . 
GA 6 HOH B 34 534 209 HOH HOH . 
GA 6 HOH B 35 535 52 HOH HOH . 
GA 6 HOH B 36 536 63 HOH HOH . 
GA 6 HOH B 37 537 116 HOH HOH . 
GA 6 HOH B 38 538 202 HOH HOH . 
GA 6 HOH B 39 539 120 HOH HOH . 
GA 6 HOH B 40 540 158 HOH HOH . 
GA 6 HOH B 41 541 39 HOH HOH . 
GA 6 HOH B 42 542 190 HOH HOH . 
GA 6 HOH B 43 543 96 HOH HOH . 
GA 6 HOH B 44 544 104 HOH HOH . 
GA 6 HOH B 45 545 98 HOH HOH . 
GA 6 HOH B 46 546 34 HOH HOH . 
GA 6 HOH B 47 547 134 HOH HOH . 
GA 6 HOH B 48 548 50 HOH HOH . 
GA 6 HOH B 49 549 7 HOH HOH . 
GA 6 HOH B 50 550 14 HOH HOH . 
GA 6 HOH B 51 551 64 HOH HOH . 
GA 6 HOH B 52 552 70 HOH HOH . 
GA 6 HOH B 53 553 95 HOH HOH . 
GA 6 HOH B 54 554 91 HOH HOH . 
GA 6 HOH B 55 555 213 HOH HOH . 
GA 6 HOH B 56 556 33 HOH HOH . 
GA 6 HOH B 57 557 155 HOH HOH . 
GA 6 HOH B 58 558 45 HOH HOH . 
GA 6 HOH B 59 559 88 HOH HOH . 
GA 6 HOH B 60 560 1 HOH HOH . 
GA 6 HOH B 61 561 10 HOH HOH . 
GA 6 HOH B 62 562 41 HOH HOH . 
GA 6 HOH B 63 563 211 HOH HOH . 
GA 6 HOH B 64 564 187 HOH HOH . 
GA 6 HOH B 65 565 27 HOH HOH . 
GA 6 HOH B 66 566 107 HOH HOH . 
GA 6 HOH B 67 567 99 HOH HOH . 
GA 6 HOH B 68 568 188 HOH HOH . 
GA 6 HOH B 69 569 101 HOH HOH . 
GA 6 HOH B 70 570 179 HOH HOH . 
GA 6 HOH B 71 571 87 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . DA 3 13.645 35.21 14.313 1 52.32 ? C1 EDO 414 B 1 
HETATM 2 O O1 EDO . . . DA 3 12.759 34.301 13.716 1 37.15 ? O1 EDO 414 B 1 
HETATM 3 C C2 EDO . . . DA 3 14.861 35.531 13.548 1 51.16 ? C2 EDO 414 B 1 
HETATM 4 O O2 EDO . . . DA 3 15.804 36.208 14.358 1 51.74 ? O2 EDO 414 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           291 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           4 
#