data_8PWB # _model_server_result.job_id 997qcR-ATDmvUhaTEs9WWQ _model_server_result.datetime_utc '2024-11-13 20:20:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pwb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":601}' # _entry.id 8PWB # _exptl.entry_id 8PWB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 528.481 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(7~{H}-purin-6-ylcarbamoyl)amino]-2-azanyl-butanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PWB _cell.length_a 63.69 _cell.length_b 63.69 _cell.length_c 224.77 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PWB _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 233 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 338 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 283 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 388 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.026 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H24 N12 O6' _chem_comp.formula_weight 528.481 _chem_comp.id H3I _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-(7~{H}-purin-6-ylcarbamoyl)amino]-2-azanyl-butanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA H3I sing 135 n n CA C H3I sing 136 n n CA CB H3I sing 137 n n CAL NAT H3I doub 138 n y CAL NAV H3I sing 139 n y CAN NAX H3I sing 140 n y CAN NBU H3I doub 141 n y CAQ NBS H3I sing 142 n n CAQ CB H3I sing 143 n n CAR CBP H3I sing 144 n n CAR NBS H3I sing 145 n n C O H3I doub 146 n n C OXT H3I sing 147 n n NAT CBE H3I sing 148 n y NAV CBI H3I doub 149 n y NAX CBG H3I sing 150 n y NAY CBC H3I sing 151 n n NAY CBE H3I sing 152 n n OAD CBC H3I doub 153 n n OAH CBL H3I sing 154 n n OAJ CBN H3I sing 155 n n CBC NBS H3I sing 156 n n CBE CBG H3I doub 157 n y CBG CBI H3I sing 158 n y CBI NBU H3I sing 159 n y CBL CBN H3I sing 160 n n CBL CBP H3I sing 161 n n CBN CBR H3I sing 162 n n CBP OBA H3I sing 163 n n CBR OBA H3I sing 164 n n CBR N9 H3I sing 165 n n N1 C2 H3I doub 166 n y N1 C6 H3I sing 167 n y C2 N3 H3I sing 168 n y N3 C4 H3I doub 169 n y C4 C5 H3I sing 170 n y C4 N9 H3I sing 171 n y C5 C6 H3I doub 172 n y C5 N7 H3I sing 173 n y C6 N6 H3I sing 174 n n N7 C8 H3I doub 175 n y C8 N9 H3I sing 176 n y C8 H81 H3I sing 177 n n N H2 H3I sing 178 n n N H H3I sing 179 n n CA HA H3I sing 180 n n CB HB3 H3I sing 181 n n CB HB2 H3I sing 182 n n OXT H3 H3I sing 183 n n C2 H21 H3I sing 184 n n CAL HAL1 H3I sing 185 n n CAN HAN1 H3I sing 186 n n CAQ HAQ2 H3I sing 187 n n CAQ HAQ1 H3I sing 188 n n CAR HAR1 H3I sing 189 n n CAR HAR2 H3I sing 190 n n CBL HBL1 H3I sing 191 n n CBN HBN1 H3I sing 192 n n CBP HBP1 H3I sing 193 n n CBR HBR1 H3I sing 194 n n N6 H61 H3I sing 195 n n N6 H62 H3I sing 196 n n NAX H4 H3I sing 197 n n NAY HAY1 H3I sing 198 n n OAH HAH1 H3I sing 199 n n OAJ HAJ1 H3I sing 200 n n # _atom_sites.entry_id 8PWB _atom_sites.fract_transf_matrix[1][1] 0.015701 _atom_sites.fract_transf_matrix[1][2] 0.009065 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01813 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004449 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 H3I A 1 601 601 H3I LIG . D 4 ACT B 1 401 401 ACT ACT . E 5 HOH A 1 701 39 HOH HOH . E 5 HOH A 2 702 10 HOH HOH . E 5 HOH A 3 703 48 HOH HOH . E 5 HOH A 4 704 19 HOH HOH . E 5 HOH A 5 705 8 HOH HOH . E 5 HOH A 6 706 27 HOH HOH . E 5 HOH A 7 707 6 HOH HOH . E 5 HOH A 8 708 29 HOH HOH . E 5 HOH A 9 709 9 HOH HOH . E 5 HOH A 10 710 15 HOH HOH . E 5 HOH A 11 711 30 HOH HOH . E 5 HOH A 12 712 14 HOH HOH . E 5 HOH A 13 713 43 HOH HOH . E 5 HOH A 14 714 53 HOH HOH . E 5 HOH A 15 715 47 HOH HOH . E 5 HOH A 16 716 24 HOH HOH . E 5 HOH A 17 717 55 HOH HOH . E 5 HOH A 18 718 44 HOH HOH . E 5 HOH A 19 719 45 HOH HOH . E 5 HOH A 20 720 59 HOH HOH . E 5 HOH A 21 721 52 HOH HOH . E 5 HOH A 22 722 23 HOH HOH . E 5 HOH A 23 723 60 HOH HOH . F 5 HOH B 1 501 32 HOH HOH . F 5 HOH B 2 502 41 HOH HOH . F 5 HOH B 3 503 18 HOH HOH . F 5 HOH B 4 504 40 HOH HOH . F 5 HOH B 5 505 5 HOH HOH . F 5 HOH B 6 506 3 HOH HOH . F 5 HOH B 7 507 38 HOH HOH . F 5 HOH B 8 508 26 HOH HOH . F 5 HOH B 9 509 4 HOH HOH . F 5 HOH B 10 510 1 HOH HOH . F 5 HOH B 11 511 21 HOH HOH . F 5 HOH B 12 512 7 HOH HOH . F 5 HOH B 13 513 28 HOH HOH . F 5 HOH B 14 514 2 HOH HOH . F 5 HOH B 15 515 33 HOH HOH . F 5 HOH B 16 516 31 HOH HOH . F 5 HOH B 17 517 17 HOH HOH . F 5 HOH B 18 518 25 HOH HOH . F 5 HOH B 19 519 12 HOH HOH . F 5 HOH B 20 520 20 HOH HOH . F 5 HOH B 21 521 22 HOH HOH . F 5 HOH B 22 522 56 HOH HOH . F 5 HOH B 23 523 16 HOH HOH . F 5 HOH B 24 524 35 HOH HOH . F 5 HOH B 25 525 11 HOH HOH . F 5 HOH B 26 526 13 HOH HOH . F 5 HOH B 27 527 34 HOH HOH . F 5 HOH B 28 528 37 HOH HOH . F 5 HOH B 29 529 58 HOH HOH . F 5 HOH B 30 530 54 HOH HOH . F 5 HOH B 31 531 57 HOH HOH . F 5 HOH B 32 532 51 HOH HOH . F 5 HOH B 33 533 36 HOH HOH . F 5 HOH B 34 534 42 HOH HOH . F 5 HOH B 35 535 46 HOH HOH . F 5 HOH B 36 536 50 HOH HOH . F 5 HOH B 37 537 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 H3I . . . C 3 9.391 -14.613 -10.67 1 48.66 ? N1 H3I 601 A 1 HETATM 2 N N3 H3I . . . C 3 9.97 -16.806 -10.069 1 48.31 ? N3 H3I 601 A 1 HETATM 3 C C4 H3I . . . C 3 9.864 -17.216 -11.328 1 47.39 ? C4 H3I 601 A 1 HETATM 4 C C5 H3I . . . C 3 9.492 -16.306 -12.302 1 46.57 ? C5 H3I 601 A 1 HETATM 5 C C6 H3I . . . C 3 9.257 -14.954 -11.923 1 46.96 ? C6 H3I 601 A 1 HETATM 6 C C8 H3I . . . C 3 9.765 -18.248 -13.245 1 53.24 ? C8 H3I 601 A 1 HETATM 7 N N H3I . . . C 3 17.998 -22.481 -10.032 1 46.02 ? N H3I 601 A 1 HETATM 8 C CA H3I . . . C 3 16.78 -23.139 -9.679 1 50.94 ? CA H3I 601 A 1 HETATM 9 C C H3I . . . C 3 17.136 -24.587 -9.453 1 54.11 ? C H3I 601 A 1 HETATM 10 O O H3I . . . C 3 16.272 -25.453 -9.425 1 58.19 ? O H3I 601 A 1 HETATM 11 C CB H3I . . . C 3 15.714 -22.996 -10.788 1 59.32 ? CB H3I 601 A 1 HETATM 12 O OXT H3I . . . C 3 18.313 -24.86 -9.308 1 52.41 -1 OXT H3I 601 A 1 HETATM 13 C C2 H3I . . . C 3 9.742 -15.528 -9.75 1 53.52 ? C2 H3I 601 A 1 HETATM 14 C CAL H3I . . . C 3 13.007 -25.257 -17.455 1 104.86 ? CAL H3I 601 A 1 HETATM 15 C CAN H3I . . . C 3 10.581 -27.544 -14.506 1 111.83 ? CAN H3I 601 A 1 HETATM 16 C CAQ H3I . . . C 3 14.172 -23.33 -10.44 1 60.31 ? CAQ H3I 601 A 1 HETATM 17 C CAR H3I . . . C 3 13.191 -21.626 -12.072 1 55.49 ? CAR H3I 601 A 1 HETATM 18 C CBC H3I . . . C 3 13.328 -24.064 -12.836 1 74.47 ? CBC H3I 601 A 1 HETATM 19 C CBE H3I . . . C 3 12.523 -24.668 -15.251 1 102.65 ? CBE H3I 601 A 1 HETATM 20 C CBG H3I . . . C 3 11.789 -25.842 -15.078 1 123.17 ? CBG H3I 601 A 1 HETATM 21 C CBI H3I . . . C 3 11.686 -26.703 -16.174 1 115.53 ? CBI H3I 601 A 1 HETATM 22 C CBL H3I . . . C 3 10.886 -21.777 -11.036 1 54.23 ? CBL H3I 601 A 1 HETATM 23 C CBN H3I . . . C 3 9.937 -20.716 -11.726 1 55.94 ? CBN H3I 601 A 1 HETATM 24 C CBP H3I . . . C 3 12.241 -21.076 -10.956 1 53.25 ? CBP H3I 601 A 1 HETATM 25 C CBR H3I . . . C 3 10.397 -19.619 -11.236 1 55.4 ? CBR H3I 601 A 1 HETATM 26 N N6 H3I . . . C 3 8.877 -13.958 -12.939 1 51.96 ? N6 H3I 601 A 1 HETATM 27 N N7 H3I . . . C 3 9.446 -16.981 -13.469 1 49.47 ? N7 H3I 601 A 1 HETATM 28 N N9 H3I . . . C 3 10.025 -18.4 -11.94 1 53.27 ? N9 H3I 601 A 1 HETATM 29 N NAT H3I . . . C 3 13.122 -24.418 -16.434 1 102.33 ? NAT H3I 601 A 1 HETATM 30 N NAV H3I . . . C 3 12.31 -26.369 -17.342 1 114.36 ? NAV H3I 601 A 1 HETATM 31 N NAX H3I . . . C 3 11.091 -26.405 -14.076 1 108.07 ? NAX H3I 601 A 1 HETATM 32 N NAY H3I . . . C 3 12.73 -23.655 -14.143 1 86.09 ? NAY H3I 601 A 1 HETATM 33 N NBS H3I . . . C 3 13.534 -23.01 -11.77 1 67.27 ? NBS H3I 601 A 1 HETATM 34 N NBU H3I . . . C 3 10.939 -27.738 -15.786 1 117.02 ? NBU H3I 601 A 1 HETATM 35 O OAD H3I . . . C 3 13.615 -25.193 -12.63 1 79.05 ? OAD H3I 601 A 1 HETATM 36 O OAH H3I . . . C 3 10.484 -22.045 -9.791 1 56.18 ? OAH H3I 601 A 1 HETATM 37 O OAJ H3I . . . C 3 8.515 -20.917 -11.267 1 57.45 ? OAJ H3I 601 A 1 HETATM 38 O OBA H3I . . . C 3 12.017 -19.805 -11.242 1 53.89 ? OBA H3I 601 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 38 #