data_8PWF # _model_server_result.job_id HfmAlXaYcpmUor_pfSix2w _model_server_result.datetime_utc '2024-10-13 16:30:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pwf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 8PWF # _exptl.entry_id 8PWF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.521 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3S,5Z)-4-methylidene-5-[(E)-3-[3-[7,7,7-tris(fluoranyl)-6-oxidanyl-6-(trifluoromethyl)heptyl]phenyl]pent-2-enylidene]cyclohexane-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PWF _cell.length_a 65.599 _cell.length_b 65.599 _cell.length_c 264.121 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PWF _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall 'P 65 2 (x,y,z+1/12)' _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -32.7995 56.8104 -44.020167 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C26 H32 F6 O3' _chem_comp.formula_weight 506.521 _chem_comp.id FVB _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3S,5Z)-4-methylidene-5-[(E)-3-[3-[7,7,7-tris(fluoranyl)-6-oxidanyl-6-(trifluoromethyl)heptyl]phenyl]pent-2-enylidene]cyclohexane-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 FVB sing 83 n n C2 C3 FVB sing 84 n n C3 C4 FVB doub 85 e n C4 C5 FVB sing 86 n n C5 C6 FVB doub 87 z n C6 C13 FVB sing 88 n n C13 C8 FVB sing 89 n n C8 O9 FVB sing 90 n n C8 C10 FVB sing 91 n n C10 C11 FVB sing 92 n n C11 O12 FVB sing 93 n n C11 C7 FVB sing 94 n n C7 C14 FVB doub 95 n n C3 C15 FVB sing 96 n n C15 C16 FVB doub 97 n y C16 C17 FVB sing 98 n y C17 C18 FVB doub 99 n y C18 C19 FVB sing 100 n y C19 C20 FVB sing 101 n n C20 C21 FVB sing 102 n n C21 C22 FVB sing 103 n n C22 C23 FVB sing 104 n n C23 C24 FVB sing 105 n n C24 C25 FVB sing 106 n n C25 O26 FVB sing 107 n n C25 C27 FVB sing 108 n n C27 F28 FVB sing 109 n n C27 F29 FVB sing 110 n n C27 F30 FVB sing 111 n n C25 C31 FVB sing 112 n n C31 F32 FVB sing 113 n n C31 F33 FVB sing 114 n n C31 F34 FVB sing 115 n n C19 C35 FVB doub 116 n y C7 C6 FVB sing 117 n n C35 C15 FVB sing 118 n y C4 H4 FVB sing 119 n n C5 H5 FVB sing 120 n n C13 H7A FVB sing 121 n n C13 H7B FVB sing 122 n n C8 H8 FVB sing 123 n n C10 H10B FVB sing 124 n n C10 H10A FVB sing 125 n n C17 H17 FVB sing 126 n n C20 H20B FVB sing 127 n n C20 H20A FVB sing 128 n n C21 H21A FVB sing 129 n n C21 H21B FVB sing 130 n n C22 H22B FVB sing 131 n n C22 H22A FVB sing 132 n n C24 H24A FVB sing 133 n n C24 H24B FVB sing 134 n n C1 H1B FVB sing 135 n n C1 H1A FVB sing 136 n n C1 H1C FVB sing 137 n n C11 H11 FVB sing 138 n n C14 H14B FVB sing 139 n n C14 H14A FVB sing 140 n n C16 H16 FVB sing 141 n n C18 H18 FVB sing 142 n n C2 H2A FVB sing 143 n n C2 H2B FVB sing 144 n n C23 H23B FVB sing 145 n n C23 H23A FVB sing 146 n n C35 H35 FVB sing 147 n n O12 H12 FVB sing 148 n n O26 H26 FVB sing 149 n n O9 H9 FVB sing 150 n n # _atom_sites.entry_id 8PWF _atom_sites.fract_transf_matrix[1][1] 0.015244 _atom_sites.fract_transf_matrix[1][2] 0.008801 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003786 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FVB A 1 501 1 FVB LIG . D 4 HOH A 1 601 10 HOH HOH . D 4 HOH A 2 602 37 HOH HOH . D 4 HOH A 3 603 1 HOH HOH . D 4 HOH A 4 604 25 HOH HOH . D 4 HOH A 5 605 4 HOH HOH . D 4 HOH A 6 606 18 HOH HOH . D 4 HOH A 7 607 2 HOH HOH . D 4 HOH A 8 608 15 HOH HOH . D 4 HOH A 9 609 27 HOH HOH . D 4 HOH A 10 610 6 HOH HOH . D 4 HOH A 11 611 8 HOH HOH . D 4 HOH A 12 612 34 HOH HOH . D 4 HOH A 13 613 33 HOH HOH . D 4 HOH A 14 614 31 HOH HOH . D 4 HOH A 15 615 11 HOH HOH . D 4 HOH A 16 616 36 HOH HOH . D 4 HOH A 17 617 16 HOH HOH . D 4 HOH A 18 618 30 HOH HOH . D 4 HOH A 19 619 3 HOH HOH . D 4 HOH A 20 620 39 HOH HOH . D 4 HOH A 21 621 9 HOH HOH . D 4 HOH A 22 622 5 HOH HOH . D 4 HOH A 23 623 17 HOH HOH . D 4 HOH A 24 624 21 HOH HOH . D 4 HOH A 25 625 38 HOH HOH . D 4 HOH A 26 626 26 HOH HOH . D 4 HOH A 27 627 32 HOH HOH . D 4 HOH A 28 628 19 HOH HOH . D 4 HOH A 29 629 7 HOH HOH . D 4 HOH A 30 630 28 HOH HOH . D 4 HOH A 31 631 23 HOH HOH . D 4 HOH A 32 632 24 HOH HOH . D 4 HOH A 33 633 20 HOH HOH . D 4 HOH A 34 634 13 HOH HOH . D 4 HOH A 35 635 35 HOH HOH . D 4 HOH A 36 636 29 HOH HOH . D 4 HOH A 37 637 40 HOH HOH . D 4 HOH A 38 638 41 HOH HOH . D 4 HOH A 39 639 22 HOH HOH . E 4 HOH B 1 701 12 HOH HOH . E 4 HOH B 2 702 14 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 FVB . . . C 3 -30.599 18.379 -5.135 1 71.16 ? C4 FVB 501 A 1 HETATM 2 C C5 FVB . . . C 3 -32.001 18.365 -5.318 1 68.95 ? C5 FVB 501 A 1 HETATM 3 C C6 FVB . . . C 3 -32.79 19.443 -5.568 1 65.96 ? C6 FVB 501 A 1 HETATM 4 C C13 FVB . . . C 3 -34.281 19.272 -5.727 1 70.42 ? C13 FVB 501 A 1 HETATM 5 C C8 FVB . . . C 3 -35.128 20.396 -5.157 1 78.15 ? C8 FVB 501 A 1 HETATM 6 C C10 FVB . . . C 3 -34.611 21.73 -5.651 1 60.55 ? C10 FVB 501 A 1 HETATM 7 C C7 FVB . . . C 3 -32.314 20.791 -5.765 1 66.6 ? C7 FVB 501 A 1 HETATM 8 C C15 FVB . . . C 3 -28.317 17.639 -4.769 1 75.06 ? C15 FVB 501 A 1 HETATM 9 C C17 FVB . . . C 3 -26.598 19.131 -3.982 1 84.09 ? C17 FVB 501 A 1 HETATM 10 C C20 FVB . . . C 3 -24.932 15.959 -5.229 1 82.58 ? C20 FVB 501 A 1 HETATM 11 C C21 FVB . . . C 3 -24.07 16.415 -6.41 1 88.09 ? C21 FVB 501 A 1 HETATM 12 C C22 FVB . . . C 3 -24.892 17.026 -7.546 1 79.57 ? C22 FVB 501 A 1 HETATM 13 C C24 FVB . . . C 3 -23.878 18.339 -9.474 1 78.75 ? C24 FVB 501 A 1 HETATM 14 C C1 FVB . . . C 3 -30.625 15.389 -6.379 1 82.41 ? C1 FVB 501 A 1 HETATM 15 C C11 FVB . . . C 3 -33.163 21.921 -5.241 1 68.5 ? C11 FVB 501 A 1 HETATM 16 C C14 FVB . . . C 3 -31.195 21.068 -6.406 1 76.92 ? C14 FVB 501 A 1 HETATM 17 C C16 FVB . . . C 3 -27.935 18.859 -4.217 1 80.53 ? C16 FVB 501 A 1 HETATM 18 C C18 FVB . . . C 3 -25.632 18.189 -4.297 1 79.99 ? C18 FVB 501 A 1 HETATM 19 C C19 FVB . . . C 3 -25.99 16.967 -4.848 1 73.4 ? C19 FVB 501 A 1 HETATM 20 C C2 FVB . . . C 3 -30.104 15.882 -5.045 1 79.57 ? C2 FVB 501 A 1 HETATM 21 C C23 FVB . . . C 3 -24.201 16.968 -8.903 1 85.34 ? C23 FVB 501 A 1 HETATM 22 C C25 FVB . . . C 3 -22.754 18.427 -10.494 1 79 ? C25 FVB 501 A 1 HETATM 23 C C27 FVB . . . C 3 -22.933 17.506 -11.718 1 87.38 ? C27 FVB 501 A 1 HETATM 24 C C3 FVB . . . C 3 -29.741 17.342 -5.004 1 74.36 ? C3 FVB 501 A 1 HETATM 25 C C31 FVB . . . C 3 -22.643 19.88 -10.983 1 82.81 ? C31 FVB 501 A 1 HETATM 26 C C35 FVB . . . C 3 -27.337 16.699 -5.08 1 67.69 ? C35 FVB 501 A 1 HETATM 27 F F28 FVB . . . C 3 -22.042 17.796 -12.663 1 76.64 ? F28 FVB 501 A 1 HETATM 28 F F29 FVB . . . C 3 -24.138 17.668 -12.26 1 84.43 ? F29 FVB 501 A 1 HETATM 29 F F30 FVB . . . C 3 -22.78 16.208 -11.432 1 83.69 ? F30 FVB 501 A 1 HETATM 30 F F32 FVB . . . C 3 -22.381 20.726 -9.99 1 88.01 ? F32 FVB 501 A 1 HETATM 31 F F33 FVB . . . C 3 -23.778 20.269 -11.566 1 78.32 ? F33 FVB 501 A 1 HETATM 32 F F34 FVB . . . C 3 -21.673 20.02 -11.879 1 86.73 ? F34 FVB 501 A 1 HETATM 33 O O12 FVB . . . C 3 -32.652 23.171 -5.727 1 63.07 ? O12 FVB 501 A 1 HETATM 34 O O26 FVB . . . C 3 -21.544 18.074 -9.838 1 74.23 ? O26 FVB 501 A 1 HETATM 35 O O9 FVB . . . C 3 -35.105 20.359 -3.722 1 79.13 ? O9 FVB 501 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 35 #