data_8PWJ # _model_server_result.job_id gKwyFfPEX56ln4mAk1owmA _model_server_result.datetime_utc '2025-06-27 02:33:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pwj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8PWJ # _exptl.entry_id 8PWJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PWJ _cell.length_a 89.75 _cell.length_b 131.7 _cell.length_c 51 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PWJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall 'C 2c 2' _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 205 A LYS 205 1_555 B C15 RET . A RET 301 1_555 ? A ? ? A ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A NZ LYS 205 A LYS 205 1_555 B C15 RET . A RET 301 1_555 ? B ? ? B ? ? ? ? ? ? ? 1.268 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 264 n n C1 C6 RET sing 265 n n C1 C16 RET sing 266 n n C1 C17 RET sing 267 n n C2 C3 RET sing 268 n n C2 H21 RET sing 269 n n C2 H22 RET sing 270 n n C3 C4 RET sing 271 n n C3 H31 RET sing 272 n n C3 H32 RET sing 273 n n C4 C5 RET sing 274 n n C4 H41 RET sing 275 n n C4 H42 RET sing 276 n n C5 C6 RET doub 277 n n C5 C18 RET sing 278 n n C6 C7 RET sing 279 n n C7 C8 RET doub 280 e n C7 H7 RET sing 281 n n C8 C9 RET sing 282 n n C8 H8 RET sing 283 n n C9 C10 RET doub 284 e n C9 C19 RET sing 285 n n C10 C11 RET sing 286 n n C10 H10 RET sing 287 n n C11 C12 RET doub 288 e n C11 H11 RET sing 289 n n C12 C13 RET sing 290 n n C12 H12 RET sing 291 n n C13 C14 RET doub 292 e n C13 C20 RET sing 293 n n C14 C15 RET sing 294 n n C14 H14 RET sing 295 n n C15 O1 RET doub 296 n n C15 H15 RET sing 297 n n C16 H161 RET sing 298 n n C16 H162 RET sing 299 n n C16 H163 RET sing 300 n n C17 H171 RET sing 301 n n C17 H172 RET sing 302 n n C17 H173 RET sing 303 n n C18 H181 RET sing 304 n n C18 H182 RET sing 305 n n C18 H183 RET sing 306 n n C19 H191 RET sing 307 n n C19 H192 RET sing 308 n n C19 H193 RET sing 309 n n C20 H201 RET sing 310 n n C20 H202 RET sing 311 n n C20 H203 RET sing 312 n n # _atom_sites.entry_id 8PWJ _atom_sites.fract_transf_matrix[1][1] 0.011142 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007593 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019608 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 300 RET RET . C 3 CL A 1 302 1 CL CL . D 4 HOH A 1 401 17 HOH HOH . D 4 HOH A 2 402 3 HOH HOH . D 4 HOH A 3 403 5 HOH HOH . D 4 HOH A 4 404 48 HOH HOH . D 4 HOH A 5 405 2 HOH HOH . D 4 HOH A 6 406 19 HOH HOH . D 4 HOH A 7 407 1 HOH HOH . D 4 HOH A 8 408 4 HOH HOH . D 4 HOH A 9 409 8 HOH HOH . D 4 HOH A 10 410 10 HOH HOH . D 4 HOH A 11 411 46 HOH HOH . D 4 HOH A 12 412 25 HOH HOH . D 4 HOH A 13 413 39 HOH HOH . D 4 HOH A 14 414 9 HOH HOH . D 4 HOH A 15 415 43 HOH HOH . D 4 HOH A 16 416 26 HOH HOH . D 4 HOH A 17 417 33 HOH HOH . D 4 HOH A 18 418 37 HOH HOH . D 4 HOH A 19 419 12 HOH HOH . D 4 HOH A 20 420 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . A . B 2 25.061 31.738 5.617 0.66 40.39 ? C1 RET 301 A 1 HETATM 2 C C1 RET . B . B 2 24.583 31.998 5.288 0.34 33.76 ? C1 RET 301 A 1 HETATM 3 C C2 RET . A . B 2 24.207 30.706 6.369 0.66 29.56 ? C2 RET 301 A 1 HETATM 4 C C2 RET . B . B 2 23.612 31.089 6.05 0.34 33.14 ? C2 RET 301 A 1 HETATM 5 C C3 RET . A . B 2 23.322 31.287 7.459 0.66 31.1 ? C3 RET 301 A 1 HETATM 6 C C3 RET . B . B 2 22.61 31.788 6.956 0.34 32.12 ? C3 RET 301 A 1 HETATM 7 C C4 RET . A . B 2 22.413 32.368 6.91 0.66 31.93 ? C4 RET 301 A 1 HETATM 8 C C4 RET . B . B 2 21.859 32.86 6.196 0.34 27.42 ? C4 RET 301 A 1 HETATM 9 C C5 RET . A . B 2 23.068 33.267 5.895 0.66 32.46 ? C5 RET 301 A 1 HETATM 10 C C5 RET . B . B 2 22.756 33.74 5.367 0.34 33.92 ? C5 RET 301 A 1 HETATM 11 C C6 RET . A . B 2 24.328 33.078 5.464 0.66 28.54 ? C6 RET 301 A 1 HETATM 12 C C6 RET . B . B 2 24.036 33.422 5.085 0.34 26.32 ? C6 RET 301 A 1 HETATM 13 C C7 RET . A . B 2 25.022 34.132 4.739 0.66 22.03 ? C7 RET 301 A 1 HETATM 14 C C7 RET . B . B 2 24.868 34.432 4.432 0.34 24.69 ? C7 RET 301 A 1 HETATM 15 C C8 RET . A . B 2 26.226 34.097 4.113 0.66 27.92 ? C8 RET 301 A 1 HETATM 16 C C8 RET . B . B 2 26.135 34.482 3.753 0.34 30.38 ? C8 RET 301 A 1 HETATM 17 C C9 RET . A . B 2 26.865 35.204 3.415 0.66 29.22 ? C9 RET 301 A 1 HETATM 18 C C9 RET . B . B 2 26.745 35.684 3.129 0.34 28.9 ? C9 RET 301 A 1 HETATM 19 C C10 RET . A . B 2 28.141 35.055 2.98 0.66 32.83 ? C10 RET 301 A 1 HETATM 20 C C10 RET . B . B 2 28.09 35.727 2.886 0.34 28.78 ? C10 RET 301 A 1 HETATM 21 C C11 RET . A . B 2 28.962 36.032 2.321 0.66 22.9 ? C11 RET 301 A 1 HETATM 22 C C11 RET . B . B 2 28.881 36.813 2.347 0.34 26.05 ? C11 RET 301 A 1 HETATM 23 C C12 RET . A . B 2 30.251 35.804 2.028 0.66 28.5 ? C12 RET 301 A 1 HETATM 24 C C12 RET . B . B 2 30.187 36.717 1.894 0.34 25.47 ? C12 RET 301 A 1 HETATM 25 C C13 RET . A . B 2 31.185 36.738 1.423 0.66 37.55 ? C13 RET 301 A 1 HETATM 26 C C13 RET . B . B 2 31.017 37.819 1.398 0.34 25.21 ? C13 RET 301 A 1 HETATM 27 C C14 RET . A . B 2 32.491 36.39 1.324 0.66 25.59 ? C14 RET 301 A 1 HETATM 28 C C14 RET . B . B 2 32.347 37.649 1.084 0.34 21.26 ? C14 RET 301 A 1 HETATM 29 C C15 RET . A . B 2 33.57 37.184 0.795 0.66 20.38 ? C15 RET 301 A 1 HETATM 30 C C15 RET . B . B 2 33.165 36.455 1.052 0.34 24.91 ? C15 RET 301 A 1 HETATM 31 C C16 RET . A . B 2 26.365 31.926 6.403 0.66 17.23 ? C16 RET 301 A 1 HETATM 32 C C16 RET . B . B 2 25.852 32.033 6.151 0.34 28.72 ? C16 RET 301 A 1 HETATM 33 C C17 RET . A . B 2 25.393 31.142 4.242 0.66 34.99 ? C17 RET 301 A 1 HETATM 34 C C17 RET . B . B 2 24.884 31.316 3.941 0.34 32.55 ? C17 RET 301 A 1 HETATM 35 C C18 RET . A . B 2 22.293 34.539 5.687 0.66 31.04 ? C18 RET 301 A 1 HETATM 36 C C18 RET . B . B 2 22.118 35.058 5.035 0.34 31.32 ? C18 RET 301 A 1 HETATM 37 C C19 RET . A . B 2 26.071 36.465 3.208 0.66 31.19 ? C19 RET 301 A 1 HETATM 38 C C19 RET . B . B 2 25.829 36.823 2.817 0.34 30.84 ? C19 RET 301 A 1 HETATM 39 C C20 RET . A . B 2 30.662 38.081 0.994 0.66 19.47 ? C20 RET 301 A 1 HETATM 40 C C20 RET . B . B 2 30.375 39.175 1.317 0.34 29.88 ? C20 RET 301 A 1 # _model_server_stats.io_time_ms 74 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 40 #