data_8PWK # _model_server_result.job_id h18Hov1FOajBR40-2AU4LQ _model_server_result.datetime_utc '2024-11-21 23:05:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pwk # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8PWK # _exptl.entry_id 8PWK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.28 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R},3~{R},4~{R},5~{R})-5-[2-azanyl-6-(methylamino)purin-9-yl]-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.98 _cell.angle_gamma 90 _cell.entry_id 8PWK _cell.length_a 77.961 _cell.length_b 46.45 _cell.length_c 63.771 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PWK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C12 H18 F N6 O6 P' _chem_comp.formula_weight 392.28 _chem_comp.id I0H _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R},3~{R},4~{R},5~{R})-5-[2-azanyl-6-(methylamino)purin-9-yl]-4-fluoranyl-4-methyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C N I0H sing 152 n n N C1 I0H sing 153 n n C1 N1 I0H doub 154 n y N1 C2 I0H sing 155 n y N2 C2 I0H sing 156 n n C2 N3 I0H doub 157 n y N3 C3 I0H sing 158 n y C3 C4 I0H doub 159 n y C1 C4 I0H sing 160 n y C4 N4 I0H sing 161 n y N4 C5 I0H doub 162 n y C5 N5 I0H sing 163 n y C3 N5 I0H sing 164 n y N5 C6 I0H sing 165 n n C6 O I0H sing 166 n n O C7 I0H sing 167 n n C8 C7 I0H sing 168 n n O1 C8 I0H sing 169 n n P O1 I0H sing 170 n n O2 P I0H doub 171 n n O3 P I0H sing 172 n n O4 P I0H sing 173 n n C7 C9 I0H sing 174 n n O5 C9 I0H sing 175 n n C9 C10 I0H sing 176 n n C6 C10 I0H sing 177 n n C11 C10 I0H sing 178 n n C10 F I0H sing 179 n n C5 H9 I0H sing 180 n n C6 H I0H sing 181 n n O3 H12 I0H sing 182 n n O4 H13 I0H sing 183 n n O5 H14 I0H sing 184 n n C11 H17 I0H sing 185 n n C11 H16 I0H sing 186 n n C11 H15 I0H sing 187 n n C9 H2 I0H sing 188 n n C7 H1 I0H sing 189 n n C8 H10 I0H sing 190 n n C8 H11 I0H sing 191 n n N2 H8 I0H sing 192 n n N2 H7 I0H sing 193 n n N H6 I0H sing 194 n n C H5 I0H sing 195 n n C H3 I0H sing 196 n n C H4 I0H sing 197 n n # _atom_sites.entry_id 8PWK _atom_sites.fract_transf_matrix[1][1] 0.012827 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001118 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015741 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 I0H A 1 201 201 I0H ATH . D 3 NA B 1 201 1 NA NA . E 4 HOH A 1 301 12 HOH HOH . E 4 HOH A 2 302 7 HOH HOH . E 4 HOH A 3 303 80 HOH HOH . E 4 HOH A 4 304 61 HOH HOH . E 4 HOH A 5 305 9 HOH HOH . E 4 HOH A 6 306 26 HOH HOH . E 4 HOH A 7 307 51 HOH HOH . E 4 HOH A 8 308 32 HOH HOH . E 4 HOH A 9 309 16 HOH HOH . E 4 HOH A 10 310 28 HOH HOH . E 4 HOH A 11 311 94 HOH HOH . E 4 HOH A 12 312 96 HOH HOH . E 4 HOH A 13 313 45 HOH HOH . E 4 HOH A 14 314 43 HOH HOH . E 4 HOH A 15 315 5 HOH HOH . E 4 HOH A 16 316 118 HOH HOH . E 4 HOH A 17 317 91 HOH HOH . E 4 HOH A 18 318 18 HOH HOH . E 4 HOH A 19 319 56 HOH HOH . E 4 HOH A 20 320 15 HOH HOH . E 4 HOH A 21 321 107 HOH HOH . E 4 HOH A 22 322 115 HOH HOH . E 4 HOH A 23 323 74 HOH HOH . E 4 HOH A 24 324 52 HOH HOH . E 4 HOH A 25 325 4 HOH HOH . E 4 HOH A 26 326 89 HOH HOH . E 4 HOH A 27 327 3 HOH HOH . E 4 HOH A 28 328 30 HOH HOH . E 4 HOH A 29 329 29 HOH HOH . E 4 HOH A 30 330 84 HOH HOH . E 4 HOH A 31 331 87 HOH HOH . E 4 HOH A 32 332 31 HOH HOH . E 4 HOH A 33 333 63 HOH HOH . E 4 HOH A 34 334 120 HOH HOH . E 4 HOH A 35 335 121 HOH HOH . E 4 HOH A 36 336 49 HOH HOH . E 4 HOH A 37 337 20 HOH HOH . E 4 HOH A 38 338 73 HOH HOH . E 4 HOH A 39 339 50 HOH HOH . E 4 HOH A 40 340 101 HOH HOH . E 4 HOH A 41 341 14 HOH HOH . E 4 HOH A 42 342 110 HOH HOH . E 4 HOH A 43 343 82 HOH HOH . E 4 HOH A 44 344 134 HOH HOH . E 4 HOH A 45 345 79 HOH HOH . E 4 HOH A 46 346 90 HOH HOH . E 4 HOH A 47 347 109 HOH HOH . E 4 HOH A 48 348 66 HOH HOH . E 4 HOH A 49 349 55 HOH HOH . E 4 HOH A 50 350 92 HOH HOH . E 4 HOH A 51 351 85 HOH HOH . E 4 HOH A 52 352 65 HOH HOH . E 4 HOH A 53 353 105 HOH HOH . E 4 HOH A 54 354 125 HOH HOH . E 4 HOH A 55 355 117 HOH HOH . E 4 HOH A 56 356 122 HOH HOH . E 4 HOH A 57 357 126 HOH HOH . E 4 HOH A 58 358 98 HOH HOH . F 4 HOH B 1 301 114 HOH HOH . F 4 HOH B 2 302 83 HOH HOH . F 4 HOH B 3 303 23 HOH HOH . F 4 HOH B 4 304 39 HOH HOH . F 4 HOH B 5 305 54 HOH HOH . F 4 HOH B 6 306 25 HOH HOH . F 4 HOH B 7 307 124 HOH HOH . F 4 HOH B 8 308 93 HOH HOH . F 4 HOH B 9 309 13 HOH HOH . F 4 HOH B 10 310 48 HOH HOH . F 4 HOH B 11 311 133 HOH HOH . F 4 HOH B 12 312 24 HOH HOH . F 4 HOH B 13 313 2 HOH HOH . F 4 HOH B 14 314 27 HOH HOH . F 4 HOH B 15 315 34 HOH HOH . F 4 HOH B 16 316 46 HOH HOH . F 4 HOH B 17 317 21 HOH HOH . F 4 HOH B 18 318 72 HOH HOH . F 4 HOH B 19 319 129 HOH HOH . F 4 HOH B 20 320 6 HOH HOH . F 4 HOH B 21 321 57 HOH HOH . F 4 HOH B 22 322 130 HOH HOH . F 4 HOH B 23 323 131 HOH HOH . F 4 HOH B 24 324 11 HOH HOH . F 4 HOH B 25 325 69 HOH HOH . F 4 HOH B 26 326 8 HOH HOH . F 4 HOH B 27 327 58 HOH HOH . F 4 HOH B 28 328 103 HOH HOH . F 4 HOH B 29 329 35 HOH HOH . F 4 HOH B 30 330 99 HOH HOH . F 4 HOH B 31 331 40 HOH HOH . F 4 HOH B 32 332 78 HOH HOH . F 4 HOH B 33 333 108 HOH HOH . F 4 HOH B 34 334 19 HOH HOH . F 4 HOH B 35 335 59 HOH HOH . F 4 HOH B 36 336 135 HOH HOH . F 4 HOH B 37 337 102 HOH HOH . F 4 HOH B 38 338 17 HOH HOH . F 4 HOH B 39 339 33 HOH HOH . F 4 HOH B 40 340 37 HOH HOH . F 4 HOH B 41 341 36 HOH HOH . F 4 HOH B 42 342 104 HOH HOH . F 4 HOH B 43 343 81 HOH HOH . F 4 HOH B 44 344 70 HOH HOH . F 4 HOH B 45 345 44 HOH HOH . F 4 HOH B 46 346 22 HOH HOH . F 4 HOH B 47 347 88 HOH HOH . F 4 HOH B 48 348 106 HOH HOH . F 4 HOH B 49 349 38 HOH HOH . F 4 HOH B 50 350 77 HOH HOH . F 4 HOH B 51 351 75 HOH HOH . F 4 HOH B 52 352 53 HOH HOH . F 4 HOH B 53 353 86 HOH HOH . F 4 HOH B 54 354 76 HOH HOH . F 4 HOH B 55 355 67 HOH HOH . F 4 HOH B 56 356 127 HOH HOH . F 4 HOH B 57 357 71 HOH HOH . F 4 HOH B 58 358 100 HOH HOH . F 4 HOH B 59 359 113 HOH HOH . F 4 HOH B 60 360 112 HOH HOH . F 4 HOH B 61 361 111 HOH HOH . F 4 HOH B 62 362 97 HOH HOH . F 4 HOH B 63 363 95 HOH HOH . F 4 HOH B 64 364 60 HOH HOH . F 4 HOH B 65 365 42 HOH HOH . F 4 HOH B 66 366 119 HOH HOH . F 4 HOH B 67 367 64 HOH HOH . F 4 HOH B 68 368 116 HOH HOH . F 4 HOH B 69 369 62 HOH HOH . F 4 HOH B 70 370 123 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 I0H . . . C 2 3.47 9.422 1.238 1 52.64 ? C1 I0H 201 A 1 HETATM 2 C C2 I0H . . . C 2 3.297 11.39 2.479 1 52.5 ? C2 I0H 201 A 1 HETATM 3 C C3 I0H . . . C 2 3.342 9.456 3.608 1 51.56 ? C3 I0H 201 A 1 HETATM 4 C C4 I0H . . . C 2 3.426 8.703 2.452 1 52.08 ? C4 I0H 201 A 1 HETATM 5 C C5 I0H . . . C 2 3.403 7.316 4.058 1 51.2 ? C5 I0H 201 A 1 HETATM 6 C C6 I0H . . . C 2 3.385 8.877 6.09 1 48.67 ? C6 I0H 201 A 1 HETATM 7 O O1 I0H . . . C 2 3.941 5.274 7.692 1 43.77 ? O1 I0H 201 A 1 HETATM 8 O O2 I0H . . . C 2 3.804 2.865 7.138 1 42.28 ? O2 I0H 201 A 1 HETATM 9 O O3 I0H . . . C 2 6 4.047 7.009 1 42.45 ? O3 I0H 201 A 1 HETATM 10 O O4 I0H . . . C 2 5.012 3.576 9.226 1 42.07 ? O4 I0H 201 A 1 HETATM 11 O O5 I0H . . . C 2 1.498 7.702 8.983 1 46.64 ? O5 I0H 201 A 1 HETATM 12 F F I0H . . . C 2 1.872 9.999 7.608 1 47.81 ? F I0H 201 A 1 HETATM 13 C C10 I0H . . . C 2 2.003 8.781 6.861 1 47.89 ? C10 I0H 201 A 1 HETATM 14 C C11 I0H . . . C 2 0.747 8.608 6.008 1 47.92 ? C11 I0H 201 A 1 HETATM 15 C C9 I0H . . . C 2 2.241 7.563 7.777 1 46.99 ? C9 I0H 201 A 1 HETATM 16 C C7 I0H . . . C 2 3.741 7.644 8.02 1 46.47 ? C7 I0H 201 A 1 HETATM 17 C C8 I0H . . . C 2 4.372 6.374 8.525 1 45.14 ? C8 I0H 201 A 1 HETATM 18 P P I0H . . . C 2 4.693 3.867 7.766 1 42.47 ? P I0H 201 A 1 HETATM 19 O O I0H . . . C 2 4.284 7.971 6.725 1 47.62 ? O I0H 201 A 1 HETATM 20 N N5 I0H . . . C 2 3.341 8.555 4.645 1 50.63 ? N5 I0H 201 A 1 HETATM 21 N N3 I0H . . . C 2 3.279 10.787 3.69 1 52.08 ? N3 I0H 201 A 1 HETATM 22 N N2 I0H . . . C 2 3.119 12.715 2.461 1 52.61 ? N2 I0H 201 A 1 HETATM 23 N N1 I0H . . . C 2 3.406 10.766 1.279 1 52.75 ? N1 I0H 201 A 1 HETATM 24 N N4 I0H . . . C 2 3.458 7.349 2.749 1 51.67 ? N4 I0H 201 A 1 HETATM 25 N N I0H . . . C 2 3.614 8.822 0.05 1 53.08 ? N I0H 201 A 1 HETATM 26 C C I0H . . . C 2 3.578 9.529 -1.216 1 53.1 ? C I0H 201 A 1 HETATM 27 H H9 I0H . . . C 2 3.416 6.397 4.638 0 51.2 ? H9 I0H 201 A 1 HETATM 28 H H I0H . . . C 2 3.841 9.861 6.187 0 48.67 ? H I0H 201 A 1 HETATM 29 H H12 I0H . . . C 2 6.28 4.907 6.598 0 42.45 ? H12 I0H 201 A 1 HETATM 30 H H13 I0H . . . C 2 5.866 3.763 9.696 0 42.07 ? H13 I0H 201 A 1 HETATM 31 H H14 I0H . . . C 2 1.689 8.604 9.353 0 46.64 ? H14 I0H 201 A 1 HETATM 32 H H17 I0H . . . C 2 0.769 7.689 5.425 0 47.92 ? H17 I0H 201 A 1 HETATM 33 H H16 I0H . . . C 2 0.62 9.43 5.304 0 47.92 ? H16 I0H 201 A 1 HETATM 34 H H15 I0H . . . C 2 -0.147 8.57 6.628 0 47.92 ? H15 I0H 201 A 1 HETATM 35 H H2 I0H . . . C 2 1.94 6.647 7.271 0 46.99 ? H2 I0H 201 A 1 HETATM 36 H H1 I0H . . . C 2 3.985 8.469 8.687 0 46.47 ? H1 I0H 201 A 1 HETATM 37 H H10 I0H . . . C 2 4.089 6.143 9.551 0 45.14 ? H10 I0H 201 A 1 HETATM 38 H H11 I0H . . . C 2 5.458 6.447 8.501 0 45.14 ? H11 I0H 201 A 1 HETATM 39 H H8 I0H . . . C 2 3.112 13.233 1.587 0 52.61 ? H8 I0H 201 A 1 HETATM 40 H H7 I0H . . . C 2 2.979 13.237 3.32 0 52.61 ? H7 I0H 201 A 1 HETATM 41 H H6 I0H . . . C 2 3.762 7.818 0.041 0 53.08 ? H6 I0H 201 A 1 HETATM 42 H H5 I0H . . . C 2 2.633 10.045 -1.373 0 53.1 ? H5 I0H 201 A 1 HETATM 43 H H3 I0H . . . C 2 3.718 8.834 -2.042 0 53.1 ? H3 I0H 201 A 1 HETATM 44 H H4 I0H . . . C 2 4.361 10.282 -1.29 0 53.1 ? H4 I0H 201 A 1 # _model_server_stats.io_time_ms 64 _model_server_stats.parse_time_ms 30 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 44 #