data_8PWM # _model_server_result.job_id w3uTyvVpnxu4st7dlIZ4Qw _model_server_result.datetime_utc '2024-11-13 20:41:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pwm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8PWM # _exptl.entry_id 8PWM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 488.463 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (1R,3S,5Z)-4-methylidene-5-[(E)-3-[3-[7,7,7-tris(fluoranyl)-6-oxidanyl-6-(trifluoromethyl)hept-3-ynyl]phenyl]but-2-enylidene]cyclohexane-1,3-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PWM _cell.length_a 65.849 _cell.length_b 65.849 _cell.length_c 264.213 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PWM _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 65 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -32.9245 57.026907 -44.0355 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C25 H26 F6 O3' _chem_comp.formula_weight 488.463 _chem_comp.id HXI _chem_comp.mon_nstd_flag . _chem_comp.name (1R,3S,5Z)-4-methylidene-5-[(E)-3-[3-[7,7,7-tris(fluoranyl)-6-oxidanyl-6-(trifluoromethyl)hept-3-ynyl]phenyl]but-2-enylidene]cyclohexane-1,3-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F30 C27 HXI sing 158 n n F29 C27 HXI sing 159 n n F32 C31 HXI sing 160 n n F34 C31 HXI sing 161 n n C27 F28 HXI sing 162 n n C27 C12 HXI sing 163 n n C31 C12 HXI sing 164 n n C31 F33 HXI sing 165 n n C12 C11 HXI sing 166 n n C12 O13 HXI sing 167 n n C11 C10 HXI sing 168 n n C10 C9 HXI trip 169 n n C9 C8 HXI sing 170 n n C8 C7 HXI sing 171 n n C24 C23 HXI doub 172 n n C19 C18 HXI sing 173 n n C19 C20 HXI sing 174 n n C15 C14 HXI sing 175 n n C21 C20 HXI sing 176 n n C21 C22 HXI sing 177 n n C23 C18 HXI sing 178 n n C23 C22 HXI sing 179 n n O26 C22 HXI sing 180 n n C18 C17 HXI doub 181 z n C17 C16 HXI sing 182 n n C14 C16 HXI doub 183 e n C14 C2 HXI sing 184 n n C20 O25 HXI sing 185 n n C1 C2 HXI doub 186 n y C1 C6 HXI sing 187 n y C2 C3 HXI sing 188 n y C7 C6 HXI sing 189 n n C6 C5 HXI doub 190 n y C3 C4 HXI doub 191 n y C5 C4 HXI sing 192 n y C7 H1 HXI sing 193 n n C7 H2 HXI sing 194 n n C8 H3 HXI sing 195 n n C8 H4 HXI sing 196 n n C1 H6 HXI sing 197 n n C5 H7 HXI sing 198 n n C4 H8 HXI sing 199 n n C3 H9 HXI sing 200 n n C15 H11 HXI sing 201 n n C15 H12 HXI sing 202 n n C15 H13 HXI sing 203 n n C16 H14 HXI sing 204 n n C17 H15 HXI sing 205 n n C19 H16 HXI sing 206 n n C19 H17 HXI sing 207 n n C20 H18 HXI sing 208 n n C21 H19 HXI sing 209 n n C21 H20 HXI sing 210 n n C22 H21 HXI sing 211 n n C24 H22 HXI sing 212 n n C24 H23 HXI sing 213 n n O13 H24 HXI sing 214 n n O25 H25 HXI sing 215 n n O26 H26 HXI sing 216 n n C11 H5 HXI sing 217 n n C11 H10 HXI sing 218 n n # _atom_sites.entry_id 8PWM _atom_sites.fract_transf_matrix[1][1] 0.015186 _atom_sites.fract_transf_matrix[1][2] 0.008768 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017536 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ACT A 1 501 502 ACT ACT . D 4 HXI A 1 502 1 HXI XXX . E 5 HOH A 1 601 56 HOH HOH . E 5 HOH A 2 602 31 HOH HOH . E 5 HOH A 3 603 45 HOH HOH . E 5 HOH A 4 604 3 HOH HOH . E 5 HOH A 5 605 14 HOH HOH . E 5 HOH A 6 606 12 HOH HOH . E 5 HOH A 7 607 30 HOH HOH . E 5 HOH A 8 608 55 HOH HOH . E 5 HOH A 9 609 34 HOH HOH . E 5 HOH A 10 610 18 HOH HOH . E 5 HOH A 11 611 42 HOH HOH . E 5 HOH A 12 612 11 HOH HOH . E 5 HOH A 13 613 6 HOH HOH . E 5 HOH A 14 614 21 HOH HOH . E 5 HOH A 15 615 4 HOH HOH . E 5 HOH A 16 616 20 HOH HOH . E 5 HOH A 17 617 33 HOH HOH . E 5 HOH A 18 618 48 HOH HOH . E 5 HOH A 19 619 53 HOH HOH . E 5 HOH A 20 620 52 HOH HOH . E 5 HOH A 21 621 16 HOH HOH . E 5 HOH A 22 622 9 HOH HOH . E 5 HOH A 23 623 15 HOH HOH . E 5 HOH A 24 624 35 HOH HOH . E 5 HOH A 25 625 25 HOH HOH . E 5 HOH A 26 626 2 HOH HOH . E 5 HOH A 27 627 32 HOH HOH . E 5 HOH A 28 628 54 HOH HOH . E 5 HOH A 29 629 39 HOH HOH . E 5 HOH A 30 630 44 HOH HOH . E 5 HOH A 31 631 47 HOH HOH . E 5 HOH A 32 632 13 HOH HOH . E 5 HOH A 33 633 19 HOH HOH . E 5 HOH A 34 634 41 HOH HOH . E 5 HOH A 35 635 7 HOH HOH . E 5 HOH A 36 636 24 HOH HOH . E 5 HOH A 37 637 1 HOH HOH . E 5 HOH A 38 638 46 HOH HOH . E 5 HOH A 39 639 17 HOH HOH . E 5 HOH A 40 640 38 HOH HOH . E 5 HOH A 41 641 51 HOH HOH . E 5 HOH A 42 642 26 HOH HOH . E 5 HOH A 43 643 8 HOH HOH . E 5 HOH A 44 644 43 HOH HOH . E 5 HOH A 45 645 50 HOH HOH . E 5 HOH A 46 646 5 HOH HOH . F 5 HOH B 1 701 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C7 HXI . . . D 4 -26.837 18.832 -4.893 1 77.39 ? C7 HXI 502 A 1 HETATM 2 C C8 HXI . . . D 4 -26.579 19.419 -6.291 1 97.72 ? C8 HXI 502 A 1 HETATM 3 C C9 HXI . . . D 4 -25.87 18.451 -7.16 1 97.81 ? C9 HXI 502 A 1 HETATM 4 C C1 HXI . . . D 4 -29.165 17.885 -5.098 1 74.23 ? C1 HXI 502 A 1 HETATM 5 C C5 HXI . . . D 4 -27.366 16.395 -4.553 1 88.12 ? C5 HXI 502 A 1 HETATM 6 C C6 HXI . . . D 4 -27.809 17.676 -4.855 1 79.7 ? C6 HXI 502 A 1 HETATM 7 C C4 HXI . . . D 4 -28.26 15.338 -4.49 1 88.67 ? C4 HXI 502 A 1 HETATM 8 C C3 HXI . . . D 4 -29.604 15.55 -4.738 1 86.97 ? C3 HXI 502 A 1 HETATM 9 C C2 HXI . . . D 4 -30.072 16.826 -5.037 1 68.33 ? C2 HXI 502 A 1 HETATM 10 C C10 HXI . . . D 4 -25.605 17.958 -8.232 1 98.86 ? C10 HXI 502 A 1 HETATM 11 C C11 HXI . . . D 4 -25.409 17.453 -9.595 1 73.75 ? C11 HXI 502 A 1 HETATM 12 C C12 HXI . . . D 4 -24.165 17.957 -10.352 1 79.87 ? C12 HXI 502 A 1 HETATM 13 C C14 HXI . . . D 4 -31.522 17.068 -5.271 1 82.14 ? C14 HXI 502 A 1 HETATM 14 C C15 HXI . . . D 4 -32.315 15.886 -5.749 1 75.06 ? C15 HXI 502 A 1 HETATM 15 C C16 HXI . . . D 4 -32.139 18.254 -5.074 1 66.28 ? C16 HXI 502 A 1 HETATM 16 C C17 HXI . . . D 4 -33.538 18.521 -5.297 1 63.04 ? C17 HXI 502 A 1 HETATM 17 C C18 HXI . . . D 4 -34.194 19.679 -5.551 1 63.85 ? C18 HXI 502 A 1 HETATM 18 C C19 HXI . . . D 4 -35.69 19.645 -5.778 1 73.12 ? C19 HXI 502 A 1 HETATM 19 C C20 HXI . . . D 4 -36.423 20.864 -5.247 1 88.48 ? C20 HXI 502 A 1 HETATM 20 C C21 HXI . . . D 4 -35.745 22.128 -5.736 1 68.3 ? C21 HXI 502 A 1 HETATM 21 C C22 HXI . . . D 4 -34.316 22.185 -5.225 1 66.22 ? C22 HXI 502 A 1 HETATM 22 C C23 HXI . . . D 4 -33.532 20.982 -5.687 1 67.98 ? C23 HXI 502 A 1 HETATM 23 C C24 HXI . . . D 4 -32.338 21.146 -6.229 1 72.43 ? C24 HXI 502 A 1 HETATM 24 C C27 HXI . . . D 4 -23.983 17.047 -11.569 1 92.5 ? C27 HXI 502 A 1 HETATM 25 C C31 HXI . . . D 4 -24.364 19.394 -10.862 1 94.16 ? C31 HXI 502 A 1 HETATM 26 F F28 HXI . . . D 4 -23.904 15.758 -11.207 1 85.49 ? F28 HXI 502 A 1 HETATM 27 F F29 HXI . . . D 4 -22.874 17.352 -12.248 1 86.27 ? F29 HXI 502 A 1 HETATM 28 F F30 HXI . . . D 4 -25.015 17.194 -12.41 1 77.13 ? F30 HXI 502 A 1 HETATM 29 F F32 HXI . . . D 4 -23.361 19.766 -11.668 1 81.24 ? F32 HXI 502 A 1 HETATM 30 F F33 HXI . . . D 4 -24.425 20.275 -9.86 1 95.31 ? F33 HXI 502 A 1 HETATM 31 F F34 HXI . . . D 4 -25.493 19.5 -11.575 1 80.84 ? F34 HXI 502 A 1 HETATM 32 O O13 HXI . . . D 4 -22.972 17.883 -9.569 1 76.28 ? O13 HXI 502 A 1 HETATM 33 O O25 HXI . . . D 4 -36.381 20.845 -3.818 1 86.36 ? O25 HXI 502 A 1 HETATM 34 O O26 HXI . . . D 4 -33.68 23.374 -5.679 1 68.86 ? O26 HXI 502 A 1 # _model_server_stats.io_time_ms 65 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 286 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 34 #