data_8PX0
#
_model_server_result.job_id            zZ-ukcuXPT8EwtvdlsqfUw 
_model_server_result.datetime_utc      '2024-10-20 01:21:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8px0 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":201}' 
#
_entry.id    8PX0 
#
_exptl.entry_id    8PX0 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              324.181 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            "L-URIDINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90.16 
_cell.angle_gamma         90 
_cell.entry_id            8PX0 
_cell.length_a            99.98 
_cell.length_b            32.62 
_cell.length_c            72.49 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PX0 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D 1 1 
B,E 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 26 A CYS 26 1_555 A SG CYS 84 A CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? 
disulf ? disulf2 A SG CYS 40 A CYS 40 1_555 A SG CYS 95 A CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? 
disulf ? disulf3 A SG CYS 58 A CYS 58 1_555 A SG CYS 110 A CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf4 A SG CYS 65 A CYS 65 1_555 A SG CYS 72 A CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
disulf ? disulf5 B SG CYS 26 B CYS 26 1_555 B SG CYS 84 B CYS 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? 
disulf ? disulf6 B SG CYS 40 B CYS 40 1_555 B SG CYS 95 B CYS 95 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? 
disulf ? disulf7 B SG CYS 58 B CYS 58 1_555 B SG CYS 110 B CYS 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? 
disulf ? disulf8 B SG CYS 65 B CYS 65 1_555 B SG CYS 72 B CYS 72 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? 
#
_chem_comp.formula           'C9 H13 N2 O9 P' 
_chem_comp.formula_weight    324.181 
_chem_comp.id                0U 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "L-URIDINE-5'-MONOPHOSPHATE" 
_chem_comp.type              'l-rna linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OP3 P 0U sing 1 n n 
OP3 HOP3 0U sing 2 n n 
P OP1 0U doub 3 n n 
P OP2 0U sing 4 n n 
P O5' 0U sing 5 n n 
OP2 HOP2 0U sing 6 n n 
O5' C5' 0U sing 7 n n 
C5' C4' 0U sing 8 n n 
C5' H5' 0U sing 9 n n 
C5' "H5''" 0U sing 10 n n 
C4' O4' 0U sing 11 n n 
C4' C3' 0U sing 12 n n 
C4' H4' 0U sing 13 n n 
O4' C1' 0U sing 14 n n 
C3' O3' 0U sing 15 n n 
C3' C2' 0U sing 16 n n 
C3' H3' 0U sing 17 n n 
O3' HO3' 0U sing 18 n n 
C2' O2' 0U sing 19 n n 
C2' C1' 0U sing 20 n n 
C2' H2' 0U sing 21 n n 
O2' HO2' 0U sing 22 n n 
C1' N1 0U sing 23 n n 
C1' H1' 0U sing 24 n n 
N1 C2 0U sing 25 n n 
N1 C6 0U sing 26 n n 
C2 O2 0U doub 27 n n 
C2 N3 0U sing 28 n n 
N3 C4 0U sing 29 n n 
N3 H3 0U sing 30 n n 
C4 O4 0U doub 31 n n 
C4 C5 0U sing 32 n n 
C5 C6 0U doub 33 n n 
C5 H5 0U sing 34 n n 
C6 H6 0U sing 35 n n 
#
_atom_sites.entry_id                     8PX0 
_atom_sites.fract_transf_matrix[1][1]    0.010002 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.000028 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.030656 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013795 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 0U A 1 201 201 0U 0U . 
D 3 HOH A 1 301 9 HOH HOH . 
D 3 HOH A 2 302 43 HOH HOH . 
D 3 HOH A 3 303 13 HOH HOH . 
D 3 HOH A 4 304 120 HOH HOH . 
D 3 HOH A 5 305 53 HOH HOH . 
D 3 HOH A 6 306 54 HOH HOH . 
D 3 HOH A 7 307 121 HOH HOH . 
D 3 HOH A 8 308 119 HOH HOH . 
D 3 HOH A 9 309 74 HOH HOH . 
D 3 HOH A 10 310 3 HOH HOH . 
D 3 HOH A 11 311 64 HOH HOH . 
D 3 HOH A 12 312 67 HOH HOH . 
D 3 HOH A 13 313 19 HOH HOH . 
D 3 HOH A 14 314 91 HOH HOH . 
D 3 HOH A 15 315 40 HOH HOH . 
D 3 HOH A 16 316 29 HOH HOH . 
D 3 HOH A 17 317 72 HOH HOH . 
D 3 HOH A 18 318 87 HOH HOH . 
D 3 HOH A 19 319 20 HOH HOH . 
D 3 HOH A 20 320 14 HOH HOH . 
D 3 HOH A 21 321 132 HOH HOH . 
D 3 HOH A 22 322 68 HOH HOH . 
D 3 HOH A 23 323 86 HOH HOH . 
D 3 HOH A 24 324 2 HOH HOH . 
D 3 HOH A 25 325 34 HOH HOH . 
D 3 HOH A 26 326 61 HOH HOH . 
D 3 HOH A 27 327 100 HOH HOH . 
D 3 HOH A 28 328 110 HOH HOH . 
D 3 HOH A 29 329 81 HOH HOH . 
D 3 HOH A 30 330 134 HOH HOH . 
D 3 HOH A 31 331 21 HOH HOH . 
D 3 HOH A 32 332 83 HOH HOH . 
D 3 HOH A 33 333 129 HOH HOH . 
D 3 HOH A 34 334 56 HOH HOH . 
D 3 HOH A 35 335 108 HOH HOH . 
D 3 HOH A 36 336 7 HOH HOH . 
D 3 HOH A 37 337 27 HOH HOH . 
D 3 HOH A 38 338 42 HOH HOH . 
D 3 HOH A 39 339 75 HOH HOH . 
D 3 HOH A 40 340 127 HOH HOH . 
D 3 HOH A 41 341 84 HOH HOH . 
D 3 HOH A 42 342 65 HOH HOH . 
D 3 HOH A 43 343 5 HOH HOH . 
D 3 HOH A 44 344 55 HOH HOH . 
D 3 HOH A 45 345 4 HOH HOH . 
D 3 HOH A 46 346 109 HOH HOH . 
D 3 HOH A 47 347 39 HOH HOH . 
D 3 HOH A 48 348 48 HOH HOH . 
D 3 HOH A 49 349 70 HOH HOH . 
D 3 HOH A 50 350 73 HOH HOH . 
D 3 HOH A 51 351 11 HOH HOH . 
D 3 HOH A 52 352 38 HOH HOH . 
D 3 HOH A 53 353 71 HOH HOH . 
D 3 HOH A 54 354 26 HOH HOH . 
D 3 HOH A 55 355 94 HOH HOH . 
D 3 HOH A 56 356 103 HOH HOH . 
D 3 HOH A 57 357 52 HOH HOH . 
D 3 HOH A 58 358 46 HOH HOH . 
D 3 HOH A 59 359 28 HOH HOH . 
D 3 HOH A 60 360 76 HOH HOH . 
D 3 HOH A 61 361 125 HOH HOH . 
D 3 HOH A 62 362 123 HOH HOH . 
D 3 HOH A 63 363 66 HOH HOH . 
D 3 HOH A 64 364 131 HOH HOH . 
D 3 HOH A 65 365 112 HOH HOH . 
D 3 HOH A 66 366 77 HOH HOH . 
D 3 HOH A 67 367 92 HOH HOH . 
E 3 HOH B 1 201 135 HOH HOH . 
E 3 HOH B 2 202 96 HOH HOH . 
E 3 HOH B 3 203 139 HOH HOH . 
E 3 HOH B 4 204 136 HOH HOH . 
E 3 HOH B 5 205 117 HOH HOH . 
E 3 HOH B 6 206 101 HOH HOH . 
E 3 HOH B 7 207 102 HOH HOH . 
E 3 HOH B 8 208 115 HOH HOH . 
E 3 HOH B 9 209 44 HOH HOH . 
E 3 HOH B 10 210 17 HOH HOH . 
E 3 HOH B 11 211 89 HOH HOH . 
E 3 HOH B 12 212 8 HOH HOH . 
E 3 HOH B 13 213 12 HOH HOH . 
E 3 HOH B 14 214 106 HOH HOH . 
E 3 HOH B 15 215 15 HOH HOH . 
E 3 HOH B 16 216 114 HOH HOH . 
E 3 HOH B 17 217 18 HOH HOH . 
E 3 HOH B 18 218 126 HOH HOH . 
E 3 HOH B 19 219 97 HOH HOH . 
E 3 HOH B 20 220 22 HOH HOH . 
E 3 HOH B 21 221 95 HOH HOH . 
E 3 HOH B 22 222 113 HOH HOH . 
E 3 HOH B 23 223 93 HOH HOH . 
E 3 HOH B 24 224 49 HOH HOH . 
E 3 HOH B 25 225 90 HOH HOH . 
E 3 HOH B 26 226 104 HOH HOH . 
E 3 HOH B 27 227 58 HOH HOH . 
E 3 HOH B 28 228 78 HOH HOH . 
E 3 HOH B 29 229 1 HOH HOH . 
E 3 HOH B 30 230 24 HOH HOH . 
E 3 HOH B 31 231 98 HOH HOH . 
E 3 HOH B 32 232 41 HOH HOH . 
E 3 HOH B 33 233 57 HOH HOH . 
E 3 HOH B 34 234 82 HOH HOH . 
E 3 HOH B 35 235 137 HOH HOH . 
E 3 HOH B 36 236 6 HOH HOH . 
E 3 HOH B 37 237 105 HOH HOH . 
E 3 HOH B 38 238 23 HOH HOH . 
E 3 HOH B 39 239 79 HOH HOH . 
E 3 HOH B 40 240 85 HOH HOH . 
E 3 HOH B 41 241 111 HOH HOH . 
E 3 HOH B 42 242 30 HOH HOH . 
E 3 HOH B 43 243 62 HOH HOH . 
E 3 HOH B 44 244 50 HOH HOH . 
E 3 HOH B 45 245 16 HOH HOH . 
E 3 HOH B 46 246 88 HOH HOH . 
E 3 HOH B 47 247 31 HOH HOH . 
E 3 HOH B 48 248 107 HOH HOH . 
E 3 HOH B 49 249 51 HOH HOH . 
E 3 HOH B 50 250 80 HOH HOH . 
E 3 HOH B 51 251 45 HOH HOH . 
E 3 HOH B 52 252 47 HOH HOH . 
E 3 HOH B 53 253 59 HOH HOH . 
E 3 HOH B 54 254 130 HOH HOH . 
E 3 HOH B 55 255 122 HOH HOH . 
E 3 HOH B 56 256 32 HOH HOH . 
E 3 HOH B 57 257 33 HOH HOH . 
E 3 HOH B 58 258 124 HOH HOH . 
E 3 HOH B 59 259 37 HOH HOH . 
E 3 HOH B 60 260 36 HOH HOH . 
E 3 HOH B 61 261 60 HOH HOH . 
E 3 HOH B 62 262 10 HOH HOH . 
E 3 HOH B 63 263 118 HOH HOH . 
E 3 HOH B 64 264 63 HOH HOH . 
E 3 HOH B 65 265 69 HOH HOH . 
E 3 HOH B 66 266 99 HOH HOH . 
E 3 HOH B 67 267 138 HOH HOH . 
E 3 HOH B 68 268 116 HOH HOH . 
E 3 HOH B 69 269 35 HOH HOH . 
E 3 HOH B 70 270 128 HOH HOH . 
E 3 HOH B 71 271 25 HOH HOH . 
E 3 HOH B 72 272 133 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O OP3 0U . . . C 2 14.343 -8.176 58.864 1 42.34 ? OP3 0U 201 A 1 
HETATM 2 P P 0U . . . C 2 13.017 -7.392 59.042 1 74.09 ? P 0U 201 A 1 
HETATM 3 O OP1 0U . . . C 2 12.761 -7.003 60.495 1 76.56 ? OP1 0U 201 A 1 
HETATM 4 O OP2 0U . . . C 2 12.849 -6.223 58.057 1 58.42 ? OP2 0U 201 A 1 
HETATM 5 O O5' 0U . . . C 2 11.76 -8.371 58.708 1 67.33 ? O5' 0U 201 A 1 
HETATM 6 C C5' 0U . . . C 2 12.001 -9.725 58.251 1 53.57 ? C5' 0U 201 A 1 
HETATM 7 C C4' 0U . . . C 2 11.735 -10.656 59.392 1 51.12 ? C4' 0U 201 A 1 
HETATM 8 O O4' 0U . . . C 2 12.963 -11.162 59.973 1 45.97 ? O4' 0U 201 A 1 
HETATM 9 C C3' 0U . . . C 2 10.99 -11.948 59.07 1 50.13 ? C3' 0U 201 A 1 
HETATM 10 O O3' 0U . . . C 2 9.654 -11.734 58.652 1 49.11 ? O3' 0U 201 A 1 
HETATM 11 C C2' 0U . . . C 2 11.102 -12.568 60.459 1 45.11 ? C2' 0U 201 A 1 
HETATM 12 O O2' 0U . . . C 2 10.269 -11.906 61.38 1 61.62 ? O2' 0U 201 A 1 
HETATM 13 C C1' 0U . . . C 2 12.573 -12.269 60.764 1 42.3 ? C1' 0U 201 A 1 
HETATM 14 N N1 0U . . . C 2 13.396 -13.457 60.492 1 36.1 ? N1 0U 201 A 1 
HETATM 15 C C2 0U . . . C 2 14.592 -13.582 61.176 1 31.64 ? C2 0U 201 A 1 
HETATM 16 O O2 0U . . . C 2 15.085 -12.677 61.839 1 27.63 ? O2 0U 201 A 1 
HETATM 17 N N3 0U . . . C 2 15.267 -14.749 60.926 1 31.58 ? N3 0U 201 A 1 
HETATM 18 C C4 0U . . . C 2 14.858 -15.8 60.126 1 33.17 ? C4 0U 201 A 1 
HETATM 19 O O4 0U . . . C 2 15.562 -16.798 60.032 1 31.94 ? O4 0U 201 A 1 
HETATM 20 C C5 0U . . . C 2 13.587 -15.619 59.498 1 36.78 ? C5 0U 201 A 1 
HETATM 21 C C6 0U . . . C 2 12.919 -14.475 59.688 1 36.5 ? C6 0U 201 A 1 
#
_model_server_stats.io_time_ms              80 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           21 
#