data_8PX8 # _model_server_result.job_id XwR-m5ac71h7gxGmTfIHKg _model_server_result.datetime_utc '2025-01-10 12:52:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8px8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":503}' # _entry.id 8PX8 # _exptl.entry_id 8PX8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 457.364 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 5-[5-bromanyl-1-[[(3~{S})-1-ethanoylpiperidin-3-yl]methyl]benzimidazol-2-yl]-1,3-dimethyl-pyridin-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PX8 _cell.length_a 71.825 _cell.length_b 52.573 _cell.length_c 31.975 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PX8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C22 H25 Br N4 O2' _chem_comp.formula_weight 457.364 _chem_comp.id I0U _chem_comp.mon_nstd_flag . _chem_comp.name 5-[5-bromanyl-1-[[(3~{S})-1-ethanoylpiperidin-3-yl]methyl]benzimidazol-2-yl]-1,3-dimethyl-pyridin-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C05 I0U sing 161 n n C05 O06 I0U doub 162 n n C05 N07 I0U sing 163 n n N07 C52 I0U sing 164 n n N07 C08 I0U sing 165 n n C08 C11 I0U sing 166 n n C11 C14 I0U sing 167 n n C14 C17 I0U sing 168 n n C17 C19 I0U sing 169 n n C19 N22 I0U sing 170 n n N22 C34 I0U sing 171 n y N22 C23 I0U sing 172 n y C23 N24 I0U doub 173 n y N24 C25 I0U sing 174 n y C25 C34 I0U doub 175 n y C25 C26 I0U sing 176 n y C26 C28 I0U doub 177 n y C28 BR29 I0U sing 178 n n C28 C30 I0U sing 179 n y C30 C32 I0U doub 180 n y C32 C34 I0U sing 181 n y C23 C35 I0U sing 182 n n C35 C50 I0U doub 183 n n C35 C36 I0U sing 184 n n C36 C38 I0U doub 185 n n C38 C39 I0U sing 186 n n C38 C43 I0U sing 187 n n C43 O44 I0U doub 188 n n C43 N45 I0U sing 189 n n N45 C46 I0U sing 190 n n N45 C50 I0U sing 191 n n C17 C52 I0U sing 192 n n C17 H18 I0U sing 193 n n C26 H27 I0U sing 194 n n C01 H03 I0U sing 195 n n C01 H04 I0U sing 196 n n C01 H02 I0U sing 197 n n C08 H10 I0U sing 198 n n C08 H09 I0U sing 199 n n C11 H12 I0U sing 200 n n C11 H13 I0U sing 201 n n C14 H16 I0U sing 202 n n C14 H15 I0U sing 203 n n C19 H21 I0U sing 204 n n C19 H20 I0U sing 205 n n C30 H31 I0U sing 206 n n C32 H33 I0U sing 207 n n C36 H37 I0U sing 208 n n C39 H42 I0U sing 209 n n C39 H41 I0U sing 210 n n C39 H40 I0U sing 211 n n C46 H49 I0U sing 212 n n C46 H48 I0U sing 213 n n C46 H47 I0U sing 214 n n C50 H51 I0U sing 215 n n C52 H54 I0U sing 216 n n C52 H53 I0U sing 217 n n # _atom_sites.entry_id 8PX8 _atom_sites.fract_transf_matrix[1][1] 0.013923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.031274 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 501 1 EDO EDO . C 3 MES A 1 502 1 MES MES . D 4 I0U A 1 503 1 I0U LIG . E 5 HOH A 1 601 159 HOH HOH . E 5 HOH A 2 602 69 HOH HOH . E 5 HOH A 3 603 34 HOH HOH . E 5 HOH A 4 604 29 HOH HOH . E 5 HOH A 5 605 117 HOH HOH . E 5 HOH A 6 606 192 HOH HOH . E 5 HOH A 7 607 224 HOH HOH . E 5 HOH A 8 608 4 HOH HOH . E 5 HOH A 9 609 95 HOH HOH . E 5 HOH A 10 610 174 HOH HOH . E 5 HOH A 11 611 73 HOH HOH . E 5 HOH A 12 612 180 HOH HOH . E 5 HOH A 13 613 102 HOH HOH . E 5 HOH A 14 614 221 HOH HOH . E 5 HOH A 15 615 52 HOH HOH . E 5 HOH A 16 616 127 HOH HOH . E 5 HOH A 17 617 66 HOH HOH . E 5 HOH A 18 618 8 HOH HOH . E 5 HOH A 19 619 203 HOH HOH . E 5 HOH A 20 620 76 HOH HOH . E 5 HOH A 21 621 58 HOH HOH . E 5 HOH A 22 622 106 HOH HOH . E 5 HOH A 23 623 181 HOH HOH . E 5 HOH A 24 624 189 HOH HOH . E 5 HOH A 25 625 227 HOH HOH . E 5 HOH A 26 626 65 HOH HOH . E 5 HOH A 27 627 6 HOH HOH . E 5 HOH A 28 628 153 HOH HOH . E 5 HOH A 29 629 91 HOH HOH . E 5 HOH A 30 630 44 HOH HOH . E 5 HOH A 31 631 20 HOH HOH . E 5 HOH A 32 632 59 HOH HOH . E 5 HOH A 33 633 128 HOH HOH . E 5 HOH A 34 634 49 HOH HOH . E 5 HOH A 35 635 23 HOH HOH . E 5 HOH A 36 636 39 HOH HOH . E 5 HOH A 37 637 175 HOH HOH . E 5 HOH A 38 638 70 HOH HOH . E 5 HOH A 39 639 26 HOH HOH . E 5 HOH A 40 640 37 HOH HOH . E 5 HOH A 41 641 5 HOH HOH . E 5 HOH A 42 642 64 HOH HOH . E 5 HOH A 43 643 14 HOH HOH . E 5 HOH A 44 644 13 HOH HOH . E 5 HOH A 45 645 143 HOH HOH . E 5 HOH A 46 646 108 HOH HOH . E 5 HOH A 47 647 18 HOH HOH . E 5 HOH A 48 648 161 HOH HOH . E 5 HOH A 49 649 61 HOH HOH . E 5 HOH A 50 650 2 HOH HOH . E 5 HOH A 51 651 62 HOH HOH . E 5 HOH A 52 652 165 HOH HOH . E 5 HOH A 53 653 7 HOH HOH . E 5 HOH A 54 654 16 HOH HOH . E 5 HOH A 55 655 178 HOH HOH . E 5 HOH A 56 656 32 HOH HOH . E 5 HOH A 57 657 105 HOH HOH . E 5 HOH A 58 658 10 HOH HOH . E 5 HOH A 59 659 204 HOH HOH . E 5 HOH A 60 660 36 HOH HOH . E 5 HOH A 61 661 3 HOH HOH . E 5 HOH A 62 662 132 HOH HOH . E 5 HOH A 63 663 87 HOH HOH . E 5 HOH A 64 664 176 HOH HOH . E 5 HOH A 65 665 12 HOH HOH . E 5 HOH A 66 666 21 HOH HOH . E 5 HOH A 67 667 74 HOH HOH . E 5 HOH A 68 668 107 HOH HOH . E 5 HOH A 69 669 27 HOH HOH . E 5 HOH A 70 670 9 HOH HOH . E 5 HOH A 71 671 60 HOH HOH . E 5 HOH A 72 672 200 HOH HOH . E 5 HOH A 73 673 122 HOH HOH . E 5 HOH A 74 674 116 HOH HOH . E 5 HOH A 75 675 217 HOH HOH . E 5 HOH A 76 676 131 HOH HOH . E 5 HOH A 77 677 24 HOH HOH . E 5 HOH A 78 678 15 HOH HOH . E 5 HOH A 79 679 45 HOH HOH . E 5 HOH A 80 680 41 HOH HOH . E 5 HOH A 81 681 104 HOH HOH . E 5 HOH A 82 682 28 HOH HOH . E 5 HOH A 83 683 30 HOH HOH . E 5 HOH A 84 684 17 HOH HOH . E 5 HOH A 85 685 31 HOH HOH . E 5 HOH A 86 686 40 HOH HOH . E 5 HOH A 87 687 25 HOH HOH . E 5 HOH A 88 688 172 HOH HOH . E 5 HOH A 89 689 216 HOH HOH . E 5 HOH A 90 690 42 HOH HOH . E 5 HOH A 91 691 11 HOH HOH . E 5 HOH A 92 692 111 HOH HOH . E 5 HOH A 93 693 94 HOH HOH . E 5 HOH A 94 694 92 HOH HOH . E 5 HOH A 95 695 57 HOH HOH . E 5 HOH A 96 696 43 HOH HOH . E 5 HOH A 97 697 187 HOH HOH . E 5 HOH A 98 698 144 HOH HOH . E 5 HOH A 99 699 182 HOH HOH . E 5 HOH A 100 700 78 HOH HOH . E 5 HOH A 101 701 50 HOH HOH . E 5 HOH A 102 702 84 HOH HOH . E 5 HOH A 103 703 167 HOH HOH . E 5 HOH A 104 704 54 HOH HOH . E 5 HOH A 105 705 33 HOH HOH . E 5 HOH A 106 706 46 HOH HOH . E 5 HOH A 107 707 160 HOH HOH . E 5 HOH A 108 708 22 HOH HOH . E 5 HOH A 109 709 1 HOH HOH . E 5 HOH A 110 710 124 HOH HOH . E 5 HOH A 111 711 48 HOH HOH . E 5 HOH A 112 712 38 HOH HOH . E 5 HOH A 113 713 141 HOH HOH . E 5 HOH A 114 714 184 HOH HOH . E 5 HOH A 115 715 80 HOH HOH . E 5 HOH A 116 716 98 HOH HOH . E 5 HOH A 117 717 146 HOH HOH . E 5 HOH A 118 718 173 HOH HOH . E 5 HOH A 119 719 123 HOH HOH . E 5 HOH A 120 720 210 HOH HOH . E 5 HOH A 121 721 155 HOH HOH . E 5 HOH A 122 722 157 HOH HOH . E 5 HOH A 123 723 137 HOH HOH . E 5 HOH A 124 724 151 HOH HOH . E 5 HOH A 125 725 211 HOH HOH . E 5 HOH A 126 726 223 HOH HOH . E 5 HOH A 127 727 63 HOH HOH . E 5 HOH A 128 728 53 HOH HOH . E 5 HOH A 129 729 112 HOH HOH . E 5 HOH A 130 730 51 HOH HOH . E 5 HOH A 131 731 215 HOH HOH . E 5 HOH A 132 732 158 HOH HOH . E 5 HOH A 133 733 19 HOH HOH . E 5 HOH A 134 734 79 HOH HOH . E 5 HOH A 135 735 136 HOH HOH . E 5 HOH A 136 736 194 HOH HOH . E 5 HOH A 137 737 213 HOH HOH . E 5 HOH A 138 738 193 HOH HOH . E 5 HOH A 139 739 115 HOH HOH . E 5 HOH A 140 740 195 HOH HOH . E 5 HOH A 141 741 86 HOH HOH . E 5 HOH A 142 742 219 HOH HOH . E 5 HOH A 143 743 177 HOH HOH . E 5 HOH A 144 744 67 HOH HOH . E 5 HOH A 145 745 150 HOH HOH . E 5 HOH A 146 746 88 HOH HOH . E 5 HOH A 147 747 96 HOH HOH . E 5 HOH A 148 748 85 HOH HOH . E 5 HOH A 149 749 56 HOH HOH . E 5 HOH A 150 750 55 HOH HOH . E 5 HOH A 151 751 142 HOH HOH . E 5 HOH A 152 752 170 HOH HOH . E 5 HOH A 153 753 68 HOH HOH . E 5 HOH A 154 754 35 HOH HOH . E 5 HOH A 155 755 222 HOH HOH . E 5 HOH A 156 756 214 HOH HOH . E 5 HOH A 157 757 126 HOH HOH . E 5 HOH A 158 758 220 HOH HOH . E 5 HOH A 159 759 138 HOH HOH . E 5 HOH A 160 760 209 HOH HOH . E 5 HOH A 161 761 230 HOH HOH . E 5 HOH A 162 762 140 HOH HOH . E 5 HOH A 163 763 75 HOH HOH . E 5 HOH A 164 764 93 HOH HOH . E 5 HOH A 165 765 202 HOH HOH . E 5 HOH A 166 766 199 HOH HOH . E 5 HOH A 167 767 207 HOH HOH . E 5 HOH A 168 768 163 HOH HOH . E 5 HOH A 169 769 47 HOH HOH . E 5 HOH A 170 770 130 HOH HOH . E 5 HOH A 171 771 120 HOH HOH . E 5 HOH A 172 772 169 HOH HOH . E 5 HOH A 173 773 229 HOH HOH . E 5 HOH A 174 774 82 HOH HOH . E 5 HOH A 175 775 168 HOH HOH . E 5 HOH A 176 776 101 HOH HOH . E 5 HOH A 177 777 113 HOH HOH . E 5 HOH A 178 778 71 HOH HOH . E 5 HOH A 179 779 186 HOH HOH . E 5 HOH A 180 780 149 HOH HOH . E 5 HOH A 181 781 90 HOH HOH . E 5 HOH A 182 782 188 HOH HOH . E 5 HOH A 183 783 97 HOH HOH . E 5 HOH A 184 784 114 HOH HOH . E 5 HOH A 185 785 119 HOH HOH . E 5 HOH A 186 786 228 HOH HOH . E 5 HOH A 187 787 190 HOH HOH . E 5 HOH A 188 788 109 HOH HOH . E 5 HOH A 189 789 139 HOH HOH . E 5 HOH A 190 790 118 HOH HOH . E 5 HOH A 191 791 129 HOH HOH . E 5 HOH A 192 792 197 HOH HOH . E 5 HOH A 193 793 185 HOH HOH . E 5 HOH A 194 794 156 HOH HOH . E 5 HOH A 195 795 83 HOH HOH . E 5 HOH A 196 796 154 HOH HOH . E 5 HOH A 197 797 183 HOH HOH . E 5 HOH A 198 798 171 HOH HOH . E 5 HOH A 199 799 205 HOH HOH . E 5 HOH A 200 800 89 HOH HOH . E 5 HOH A 201 801 196 HOH HOH . E 5 HOH A 202 802 134 HOH HOH . E 5 HOH A 203 803 77 HOH HOH . E 5 HOH A 204 804 208 HOH HOH . E 5 HOH A 205 805 164 HOH HOH . E 5 HOH A 206 806 147 HOH HOH . E 5 HOH A 207 807 110 HOH HOH . E 5 HOH A 208 808 218 HOH HOH . E 5 HOH A 209 809 225 HOH HOH . E 5 HOH A 210 810 121 HOH HOH . E 5 HOH A 211 811 166 HOH HOH . E 5 HOH A 212 812 231 HOH HOH . E 5 HOH A 213 813 162 HOH HOH . E 5 HOH A 214 814 100 HOH HOH . E 5 HOH A 215 815 212 HOH HOH . E 5 HOH A 216 816 81 HOH HOH . E 5 HOH A 217 817 191 HOH HOH . E 5 HOH A 218 818 179 HOH HOH . E 5 HOH A 219 819 152 HOH HOH . E 5 HOH A 220 820 125 HOH HOH . E 5 HOH A 221 821 198 HOH HOH . E 5 HOH A 222 822 226 HOH HOH . E 5 HOH A 223 823 133 HOH HOH . E 5 HOH A 224 824 103 HOH HOH . E 5 HOH A 225 825 72 HOH HOH . E 5 HOH A 226 826 135 HOH HOH . E 5 HOH A 227 827 148 HOH HOH . E 5 HOH A 228 828 145 HOH HOH . E 5 HOH A 229 829 99 HOH HOH . E 5 HOH A 230 830 201 HOH HOH . E 5 HOH A 231 831 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C17 I0U . . . D 4 40.8 18.506 10.57 1 15.55 0 C17 I0U 503 A 1 HETATM 2 C C26 I0U . . . D 4 37.307 21.833 7.46 1 16.1 0 C26 I0U 503 A 1 HETATM 3 C C28 I0U . . . D 4 37.16 22.864 8.37 1 15.47 0 C28 I0U 503 A 1 HETATM 4 C C01 I0U . . . D 4 43.937 16.297 11.981 1 16.25 0 C01 I0U 503 A 1 HETATM 5 C C05 I0U . . . D 4 42.604 16.143 12.651 1 15.26 0 C05 I0U 503 A 1 HETATM 6 O O06 I0U . . . D 4 42.366 15.172 13.357 1 16.29 0 O06 I0U 503 A 1 HETATM 7 N N07 I0U . . . D 4 41.642 17.093 12.422 1 15.52 0 N07 I0U 503 A 1 HETATM 8 C C08 I0U . . . D 4 40.316 17.053 13.055 1 15.88 0 C08 I0U 503 A 1 HETATM 9 C C11 I0U . . . D 4 39.195 17.286 12.068 1 15.36 0 C11 I0U 503 A 1 HETATM 10 C C14 I0U . . . D 4 39.439 18.541 11.245 1 15.33 0 C14 I0U 503 A 1 HETATM 11 C C19 I0U . . . D 4 41.083 19.755 9.764 1 15.36 0 C19 I0U 503 A 1 HETATM 12 N N22 I0U . . . D 4 40.059 20.011 8.744 1 15.23 0 N22 I0U 503 A 1 HETATM 13 C C23 I0U . . . D 4 39.75 19.296 7.604 1 14.09 0 C23 I0U 503 A 1 HETATM 14 N N24 I0U . . . D 4 38.715 19.786 6.953 1 14.1 0 N24 I0U 503 A 1 HETATM 15 C C25 I0U . . . D 4 38.334 20.914 7.684 1 15.18 0 C25 I0U 503 A 1 HETATM 16 BR BR29 I0U . . . D 4 35.774 24.133 8.093 1 21.89 0 BR29 I0U 503 A 1 HETATM 17 C C30 I0U . . . D 4 37.973 23.007 9.478 1 15.64 0 C30 I0U 503 A 1 HETATM 18 C C32 I0U . . . D 4 38.979 22.092 9.713 1 15.46 0 C32 I0U 503 A 1 HETATM 19 C C34 I0U . . . D 4 39.15 21.062 8.799 1 14.98 0 C34 I0U 503 A 1 HETATM 20 C C35 I0U . . . D 4 40.439 18.095 7.164 1 13.05 0 C35 I0U 503 A 1 HETATM 21 C C36 I0U . . . D 4 41.859 17.913 7.294 1 13.5 0 C36 I0U 503 A 1 HETATM 22 C C38 I0U . . . D 4 42.476 16.778 6.887 1 12.44 0 C38 I0U 503 A 1 HETATM 23 C C39 I0U . . . D 4 43.96 16.586 7.022 1 13.21 0 C39 I0U 503 A 1 HETATM 24 C C43 I0U . . . D 4 41.704 15.711 6.296 1 13.3 0 C43 I0U 503 A 1 HETATM 25 O O44 I0U . . . D 4 42.171 14.636 5.924 1 13.13 0 O44 I0U 503 A 1 HETATM 26 N N45 I0U . . . D 4 40.328 15.924 6.181 1 13.13 0 N45 I0U 503 A 1 HETATM 27 C C46 I0U . . . D 4 39.529 14.847 5.594 1 12.88 0 C46 I0U 503 A 1 HETATM 28 C C50 I0U . . . D 4 39.734 17.078 6.61 1 13.34 0 C50 I0U 503 A 1 HETATM 29 C C52 I0U . . . D 4 41.871 18.313 11.636 1 15.83 0 C52 I0U 503 A 1 # _model_server_stats.io_time_ms 63 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 29 #