data_8PXI # _model_server_result.job_id uBoVm_E5zW-McL09KGOf-g _model_server_result.datetime_utc '2024-10-12 21:16:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pxi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 8PXI # _exptl.entry_id 8PXI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 108.39 _cell.angle_gamma 90 _cell.entry_id 8PXI _cell.length_a 45.077 _cell.length_b 73.066 _cell.length_c 51.7 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PXI _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.035 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 121 n n S C1 DMS sing 122 n n S C2 DMS sing 123 n n C1 H11 DMS sing 124 n n C1 H12 DMS sing 125 n n C1 H13 DMS sing 126 n n C2 H21 DMS sing 127 n n C2 H22 DMS sing 128 n n C2 H23 DMS sing 129 n n # _atom_sites.entry_id 8PXI _atom_sites.fract_transf_matrix[1][1] 0.022184 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007375 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013686 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020383 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MPD A 1 401 402 MPD MPD . C 3 DMS A 1 402 403 DMS DMS . D 3 DMS A 1 403 404 DMS DMS . E 3 DMS A 1 404 405 DMS DMS . F 4 D8V A 1 405 406 D8V 283 . G 5 HOH A 1 501 221 HOH HOH . G 5 HOH A 2 502 254 HOH HOH . G 5 HOH A 3 503 82 HOH HOH . G 5 HOH A 4 504 119 HOH HOH . G 5 HOH A 5 505 234 HOH HOH . G 5 HOH A 6 506 112 HOH HOH . G 5 HOH A 7 507 281 HOH HOH . G 5 HOH A 8 508 259 HOH HOH . G 5 HOH A 9 509 244 HOH HOH . G 5 HOH A 10 510 142 HOH HOH . G 5 HOH A 11 511 316 HOH HOH . G 5 HOH A 12 512 230 HOH HOH . G 5 HOH A 13 513 109 HOH HOH . G 5 HOH A 14 514 47 HOH HOH . G 5 HOH A 15 515 199 HOH HOH . G 5 HOH A 16 516 304 HOH HOH . G 5 HOH A 17 517 49 HOH HOH . G 5 HOH A 18 518 120 HOH HOH . G 5 HOH A 19 519 37 HOH HOH . G 5 HOH A 20 520 303 HOH HOH . G 5 HOH A 21 521 81 HOH HOH . G 5 HOH A 22 522 16 HOH HOH . G 5 HOH A 23 523 52 HOH HOH . G 5 HOH A 24 524 302 HOH HOH . G 5 HOH A 25 525 123 HOH HOH . G 5 HOH A 26 526 298 HOH HOH . G 5 HOH A 27 527 211 HOH HOH . G 5 HOH A 28 528 269 HOH HOH . G 5 HOH A 29 529 5 HOH HOH . G 5 HOH A 30 530 86 HOH HOH . G 5 HOH A 31 531 191 HOH HOH . G 5 HOH A 32 532 118 HOH HOH . G 5 HOH A 33 533 103 HOH HOH . G 5 HOH A 34 534 19 HOH HOH . G 5 HOH A 35 535 153 HOH HOH . G 5 HOH A 36 536 68 HOH HOH . G 5 HOH A 37 537 150 HOH HOH . G 5 HOH A 38 538 116 HOH HOH . G 5 HOH A 39 539 18 HOH HOH . G 5 HOH A 40 540 24 HOH HOH . G 5 HOH A 41 541 113 HOH HOH . G 5 HOH A 42 542 11 HOH HOH . G 5 HOH A 43 543 39 HOH HOH . G 5 HOH A 44 544 70 HOH HOH . G 5 HOH A 45 545 292 HOH HOH . G 5 HOH A 46 546 9 HOH HOH . G 5 HOH A 47 547 107 HOH HOH . G 5 HOH A 48 548 50 HOH HOH . G 5 HOH A 49 549 227 HOH HOH . G 5 HOH A 50 550 26 HOH HOH . G 5 HOH A 51 551 45 HOH HOH . G 5 HOH A 52 552 84 HOH HOH . G 5 HOH A 53 553 3 HOH HOH . G 5 HOH A 54 554 87 HOH HOH . G 5 HOH A 55 555 76 HOH HOH . G 5 HOH A 56 556 55 HOH HOH . G 5 HOH A 57 557 36 HOH HOH . G 5 HOH A 58 558 147 HOH HOH . G 5 HOH A 59 559 25 HOH HOH . G 5 HOH A 60 560 217 HOH HOH . G 5 HOH A 61 561 229 HOH HOH . G 5 HOH A 62 562 192 HOH HOH . G 5 HOH A 63 563 97 HOH HOH . G 5 HOH A 64 564 83 HOH HOH . G 5 HOH A 65 565 198 HOH HOH . G 5 HOH A 66 566 141 HOH HOH . G 5 HOH A 67 567 93 HOH HOH . G 5 HOH A 68 568 69 HOH HOH . G 5 HOH A 69 569 159 HOH HOH . G 5 HOH A 70 570 295 HOH HOH . G 5 HOH A 71 571 202 HOH HOH . G 5 HOH A 72 572 31 HOH HOH . G 5 HOH A 73 573 21 HOH HOH . G 5 HOH A 74 574 100 HOH HOH . G 5 HOH A 75 575 271 HOH HOH . G 5 HOH A 76 576 130 HOH HOH . G 5 HOH A 77 577 7 HOH HOH . G 5 HOH A 78 578 90 HOH HOH . G 5 HOH A 79 579 91 HOH HOH . G 5 HOH A 80 580 108 HOH HOH . G 5 HOH A 81 581 146 HOH HOH . G 5 HOH A 82 582 179 HOH HOH . G 5 HOH A 83 583 257 HOH HOH . G 5 HOH A 84 584 205 HOH HOH . G 5 HOH A 85 585 48 HOH HOH . G 5 HOH A 86 586 117 HOH HOH . G 5 HOH A 87 587 297 HOH HOH . G 5 HOH A 88 588 40 HOH HOH . G 5 HOH A 89 589 23 HOH HOH . G 5 HOH A 90 590 272 HOH HOH . G 5 HOH A 91 591 138 HOH HOH . G 5 HOH A 92 592 278 HOH HOH . G 5 HOH A 93 593 17 HOH HOH . G 5 HOH A 94 594 4 HOH HOH . G 5 HOH A 95 595 308 HOH HOH . G 5 HOH A 96 596 287 HOH HOH . G 5 HOH A 97 597 59 HOH HOH . G 5 HOH A 98 598 2 HOH HOH . G 5 HOH A 99 599 242 HOH HOH . G 5 HOH A 100 600 110 HOH HOH . G 5 HOH A 101 601 194 HOH HOH . G 5 HOH A 102 602 200 HOH HOH . G 5 HOH A 103 603 61 HOH HOH . G 5 HOH A 104 604 85 HOH HOH . G 5 HOH A 105 605 46 HOH HOH . G 5 HOH A 106 606 51 HOH HOH . G 5 HOH A 107 607 64 HOH HOH . G 5 HOH A 108 608 58 HOH HOH . G 5 HOH A 109 609 43 HOH HOH . G 5 HOH A 110 610 22 HOH HOH . G 5 HOH A 111 611 102 HOH HOH . G 5 HOH A 112 612 14 HOH HOH . G 5 HOH A 113 613 151 HOH HOH . G 5 HOH A 114 614 262 HOH HOH . G 5 HOH A 115 615 310 HOH HOH . G 5 HOH A 116 616 273 HOH HOH . G 5 HOH A 117 617 162 HOH HOH . G 5 HOH A 118 618 8 HOH HOH . G 5 HOH A 119 619 98 HOH HOH . G 5 HOH A 120 620 128 HOH HOH . G 5 HOH A 121 621 293 HOH HOH . G 5 HOH A 122 622 132 HOH HOH . G 5 HOH A 123 623 12 HOH HOH . G 5 HOH A 124 624 80 HOH HOH . G 5 HOH A 125 625 28 HOH HOH . G 5 HOH A 126 626 6 HOH HOH . G 5 HOH A 127 627 256 HOH HOH . G 5 HOH A 128 628 29 HOH HOH . G 5 HOH A 129 629 15 HOH HOH . G 5 HOH A 130 630 228 HOH HOH . G 5 HOH A 131 631 67 HOH HOH . G 5 HOH A 132 632 105 HOH HOH . G 5 HOH A 133 633 172 HOH HOH . G 5 HOH A 134 634 42 HOH HOH . G 5 HOH A 135 635 72 HOH HOH . G 5 HOH A 136 636 74 HOH HOH . G 5 HOH A 137 637 60 HOH HOH . G 5 HOH A 138 638 160 HOH HOH . G 5 HOH A 139 639 183 HOH HOH . G 5 HOH A 140 640 53 HOH HOH . G 5 HOH A 141 641 101 HOH HOH . G 5 HOH A 142 642 44 HOH HOH . G 5 HOH A 143 643 140 HOH HOH . G 5 HOH A 144 644 88 HOH HOH . G 5 HOH A 145 645 126 HOH HOH . G 5 HOH A 146 646 291 HOH HOH . G 5 HOH A 147 647 30 HOH HOH . G 5 HOH A 148 648 161 HOH HOH . G 5 HOH A 149 649 166 HOH HOH . G 5 HOH A 150 650 133 HOH HOH . G 5 HOH A 151 651 178 HOH HOH . G 5 HOH A 152 652 167 HOH HOH . G 5 HOH A 153 653 215 HOH HOH . G 5 HOH A 154 654 73 HOH HOH . G 5 HOH A 155 655 34 HOH HOH . G 5 HOH A 156 656 10 HOH HOH . G 5 HOH A 157 657 265 HOH HOH . G 5 HOH A 158 658 258 HOH HOH . G 5 HOH A 159 659 13 HOH HOH . G 5 HOH A 160 660 96 HOH HOH . G 5 HOH A 161 661 38 HOH HOH . G 5 HOH A 162 662 214 HOH HOH . G 5 HOH A 163 663 111 HOH HOH . G 5 HOH A 164 664 154 HOH HOH . G 5 HOH A 165 665 270 HOH HOH . G 5 HOH A 166 666 285 HOH HOH . G 5 HOH A 167 667 33 HOH HOH . G 5 HOH A 168 668 136 HOH HOH . G 5 HOH A 169 669 245 HOH HOH . G 5 HOH A 170 670 187 HOH HOH . G 5 HOH A 171 671 32 HOH HOH . G 5 HOH A 172 672 255 HOH HOH . G 5 HOH A 173 673 92 HOH HOH . G 5 HOH A 174 674 78 HOH HOH . G 5 HOH A 175 675 240 HOH HOH . G 5 HOH A 176 676 35 HOH HOH . G 5 HOH A 177 677 163 HOH HOH . G 5 HOH A 178 678 62 HOH HOH . G 5 HOH A 179 679 197 HOH HOH . G 5 HOH A 180 680 27 HOH HOH . G 5 HOH A 181 681 243 HOH HOH . G 5 HOH A 182 682 190 HOH HOH . G 5 HOH A 183 683 236 HOH HOH . G 5 HOH A 184 684 294 HOH HOH . G 5 HOH A 185 685 145 HOH HOH . G 5 HOH A 186 686 149 HOH HOH . G 5 HOH A 187 687 239 HOH HOH . G 5 HOH A 188 688 249 HOH HOH . G 5 HOH A 189 689 56 HOH HOH . G 5 HOH A 190 690 127 HOH HOH . G 5 HOH A 191 691 99 HOH HOH . G 5 HOH A 192 692 137 HOH HOH . G 5 HOH A 193 693 156 HOH HOH . G 5 HOH A 194 694 143 HOH HOH . G 5 HOH A 195 695 201 HOH HOH . G 5 HOH A 196 696 250 HOH HOH . G 5 HOH A 197 697 248 HOH HOH . G 5 HOH A 198 698 121 HOH HOH . G 5 HOH A 199 699 41 HOH HOH . G 5 HOH A 200 700 148 HOH HOH . G 5 HOH A 201 701 176 HOH HOH . G 5 HOH A 202 702 66 HOH HOH . G 5 HOH A 203 703 158 HOH HOH . G 5 HOH A 204 704 318 HOH HOH . G 5 HOH A 205 705 71 HOH HOH . G 5 HOH A 206 706 129 HOH HOH . G 5 HOH A 207 707 223 HOH HOH . G 5 HOH A 208 708 79 HOH HOH . G 5 HOH A 209 709 261 HOH HOH . G 5 HOH A 210 710 206 HOH HOH . G 5 HOH A 211 711 63 HOH HOH . G 5 HOH A 212 712 224 HOH HOH . G 5 HOH A 213 713 57 HOH HOH . G 5 HOH A 214 714 226 HOH HOH . G 5 HOH A 215 715 54 HOH HOH . G 5 HOH A 216 716 170 HOH HOH . G 5 HOH A 217 717 124 HOH HOH . G 5 HOH A 218 718 313 HOH HOH . G 5 HOH A 219 719 135 HOH HOH . G 5 HOH A 220 720 89 HOH HOH . G 5 HOH A 221 721 139 HOH HOH . G 5 HOH A 222 722 296 HOH HOH . G 5 HOH A 223 723 157 HOH HOH . G 5 HOH A 224 724 173 HOH HOH . G 5 HOH A 225 725 280 HOH HOH . G 5 HOH A 226 726 95 HOH HOH . G 5 HOH A 227 727 253 HOH HOH . G 5 HOH A 228 728 309 HOH HOH . G 5 HOH A 229 729 207 HOH HOH . G 5 HOH A 230 730 288 HOH HOH . G 5 HOH A 231 731 104 HOH HOH . G 5 HOH A 232 732 300 HOH HOH . G 5 HOH A 233 733 268 HOH HOH . G 5 HOH A 234 734 168 HOH HOH . G 5 HOH A 235 735 184 HOH HOH . G 5 HOH A 236 736 94 HOH HOH . G 5 HOH A 237 737 208 HOH HOH . G 5 HOH A 238 738 115 HOH HOH . G 5 HOH A 239 739 188 HOH HOH . G 5 HOH A 240 740 177 HOH HOH . G 5 HOH A 241 741 196 HOH HOH . G 5 HOH A 242 742 267 HOH HOH . G 5 HOH A 243 743 77 HOH HOH . G 5 HOH A 244 744 219 HOH HOH . G 5 HOH A 245 745 180 HOH HOH . G 5 HOH A 246 746 286 HOH HOH . G 5 HOH A 247 747 75 HOH HOH . G 5 HOH A 248 748 122 HOH HOH . G 5 HOH A 249 749 189 HOH HOH . G 5 HOH A 250 750 181 HOH HOH . G 5 HOH A 251 751 238 HOH HOH . G 5 HOH A 252 752 315 HOH HOH . G 5 HOH A 253 753 204 HOH HOH . G 5 HOH A 254 754 209 HOH HOH . G 5 HOH A 255 755 210 HOH HOH . G 5 HOH A 256 756 241 HOH HOH . G 5 HOH A 257 757 274 HOH HOH . G 5 HOH A 258 758 195 HOH HOH . G 5 HOH A 259 759 213 HOH HOH . G 5 HOH A 260 760 251 HOH HOH . G 5 HOH A 261 761 305 HOH HOH . G 5 HOH A 262 762 218 HOH HOH . G 5 HOH A 263 763 237 HOH HOH . G 5 HOH A 264 764 289 HOH HOH . G 5 HOH A 265 765 232 HOH HOH . G 5 HOH A 266 766 233 HOH HOH . G 5 HOH A 267 767 225 HOH HOH . G 5 HOH A 268 768 193 HOH HOH . G 5 HOH A 269 769 144 HOH HOH . G 5 HOH A 270 770 152 HOH HOH . G 5 HOH A 271 771 317 HOH HOH . G 5 HOH A 272 772 131 HOH HOH . G 5 HOH A 273 773 247 HOH HOH . G 5 HOH A 274 774 264 HOH HOH . G 5 HOH A 275 775 246 HOH HOH . G 5 HOH A 276 776 299 HOH HOH . G 5 HOH A 277 777 216 HOH HOH . G 5 HOH A 278 778 307 HOH HOH . G 5 HOH A 279 779 235 HOH HOH . G 5 HOH A 280 780 171 HOH HOH . G 5 HOH A 281 781 260 HOH HOH . G 5 HOH A 282 782 222 HOH HOH . G 5 HOH A 283 783 314 HOH HOH . G 5 HOH A 284 784 212 HOH HOH . G 5 HOH A 285 785 306 HOH HOH . G 5 HOH A 286 786 311 HOH HOH . G 5 HOH A 287 787 301 HOH HOH . G 5 HOH A 288 788 203 HOH HOH . G 5 HOH A 289 789 263 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . C 3 -1.648 8.817 -21.273 1 40.3 ? S DMS 402 A 1 HETATM 2 O O DMS . . . C 3 -0.899 7.555 -20.997 1 36.08 ? O DMS 402 A 1 HETATM 3 C C1 DMS . . . C 3 -0.531 10.241 -21.165 1 40.06 ? C1 DMS 402 A 1 HETATM 4 C C2 DMS . . . C 3 -2.781 9.162 -19.903 1 40.22 ? C2 DMS 402 A 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 335 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #