data_8PXL # _model_server_result.job_id kiP2s5JquozAEQxjOFOt1Q _model_server_result.datetime_utc '2024-11-05 04:01:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pxl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 8PXL # _exptl.entry_id 8PXL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PXL _cell.length_a 98.243 _cell.length_b 98.243 _cell.length_c 170.476 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PXL _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N ? 4 F N N ? 4 G N N ? 4 H N N # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 174 n n C O2 FMT sing 175 n n C H FMT sing 176 n n O2 HO2 FMT sing 177 n n # _atom_sites.entry_id 8PXL _atom_sites.fract_transf_matrix[1][1] 0.010179 _atom_sites.fract_transf_matrix[1][2] 0.005877 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011754 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 500 500 FAD FAD . C 3 GOL A 1 501 501 GOL GOL . D 4 FMT A 1 502 502 FMT FMT . E 4 FMT A 1 503 503 FMT FMT . F 4 FMT A 1 504 504 FMT FMT . G 4 FMT A 1 505 505 FMT FMT . H 4 FMT A 1 506 506 FMT FMT . I 5 HOH A 1 601 77 HOH HOH . I 5 HOH A 2 602 277 HOH HOH . I 5 HOH A 3 603 290 HOH HOH . I 5 HOH A 4 604 212 HOH HOH . I 5 HOH A 5 605 132 HOH HOH . I 5 HOH A 6 606 146 HOH HOH . I 5 HOH A 7 607 32 HOH HOH . I 5 HOH A 8 608 266 HOH HOH . I 5 HOH A 9 609 270 HOH HOH . I 5 HOH A 10 610 271 HOH HOH . I 5 HOH A 11 611 128 HOH HOH . I 5 HOH A 12 612 92 HOH HOH . I 5 HOH A 13 613 289 HOH HOH . I 5 HOH A 14 614 227 HOH HOH . I 5 HOH A 15 615 199 HOH HOH . I 5 HOH A 16 616 155 HOH HOH . I 5 HOH A 17 617 136 HOH HOH . I 5 HOH A 18 618 226 HOH HOH . I 5 HOH A 19 619 194 HOH HOH . I 5 HOH A 20 620 185 HOH HOH . I 5 HOH A 21 621 108 HOH HOH . I 5 HOH A 22 622 250 HOH HOH . I 5 HOH A 23 623 46 HOH HOH . I 5 HOH A 24 624 160 HOH HOH . I 5 HOH A 25 625 221 HOH HOH . I 5 HOH A 26 626 130 HOH HOH . I 5 HOH A 27 627 223 HOH HOH . I 5 HOH A 28 628 107 HOH HOH . I 5 HOH A 29 629 7 HOH HOH . I 5 HOH A 30 630 115 HOH HOH . I 5 HOH A 31 631 76 HOH HOH . I 5 HOH A 32 632 158 HOH HOH . I 5 HOH A 33 633 121 HOH HOH . I 5 HOH A 34 634 258 HOH HOH . I 5 HOH A 35 635 51 HOH HOH . I 5 HOH A 36 636 95 HOH HOH . I 5 HOH A 37 637 140 HOH HOH . I 5 HOH A 38 638 211 HOH HOH . I 5 HOH A 39 639 10 HOH HOH . I 5 HOH A 40 640 31 HOH HOH . I 5 HOH A 41 641 251 HOH HOH . I 5 HOH A 42 642 35 HOH HOH . I 5 HOH A 43 643 34 HOH HOH . I 5 HOH A 44 644 137 HOH HOH . I 5 HOH A 45 645 23 HOH HOH . I 5 HOH A 46 646 138 HOH HOH . I 5 HOH A 47 647 255 HOH HOH . I 5 HOH A 48 648 286 HOH HOH . I 5 HOH A 49 649 159 HOH HOH . I 5 HOH A 50 650 24 HOH HOH . I 5 HOH A 51 651 58 HOH HOH . I 5 HOH A 52 652 52 HOH HOH . I 5 HOH A 53 653 13 HOH HOH . I 5 HOH A 54 654 127 HOH HOH . I 5 HOH A 55 655 182 HOH HOH . I 5 HOH A 56 656 18 HOH HOH . I 5 HOH A 57 657 178 HOH HOH . I 5 HOH A 58 658 101 HOH HOH . I 5 HOH A 59 659 197 HOH HOH . I 5 HOH A 60 660 186 HOH HOH . I 5 HOH A 61 661 14 HOH HOH . I 5 HOH A 62 662 213 HOH HOH . I 5 HOH A 63 663 57 HOH HOH . I 5 HOH A 64 664 87 HOH HOH . I 5 HOH A 65 665 4 HOH HOH . I 5 HOH A 66 666 216 HOH HOH . I 5 HOH A 67 667 195 HOH HOH . I 5 HOH A 68 668 139 HOH HOH . I 5 HOH A 69 669 99 HOH HOH . I 5 HOH A 70 670 260 HOH HOH . I 5 HOH A 71 671 273 HOH HOH . I 5 HOH A 72 672 75 HOH HOH . I 5 HOH A 73 673 161 HOH HOH . I 5 HOH A 74 674 55 HOH HOH . I 5 HOH A 75 675 3 HOH HOH . I 5 HOH A 76 676 188 HOH HOH . I 5 HOH A 77 677 6 HOH HOH . I 5 HOH A 78 678 36 HOH HOH . I 5 HOH A 79 679 208 HOH HOH . I 5 HOH A 80 680 269 HOH HOH . I 5 HOH A 81 681 280 HOH HOH . I 5 HOH A 82 682 172 HOH HOH . I 5 HOH A 83 683 64 HOH HOH . I 5 HOH A 84 684 42 HOH HOH . I 5 HOH A 85 685 264 HOH HOH . I 5 HOH A 86 686 33 HOH HOH . I 5 HOH A 87 687 293 HOH HOH . I 5 HOH A 88 688 237 HOH HOH . I 5 HOH A 89 689 9 HOH HOH . I 5 HOH A 90 690 15 HOH HOH . I 5 HOH A 91 691 25 HOH HOH . I 5 HOH A 92 692 261 HOH HOH . I 5 HOH A 93 693 43 HOH HOH . I 5 HOH A 94 694 54 HOH HOH . I 5 HOH A 95 695 112 HOH HOH . I 5 HOH A 96 696 53 HOH HOH . I 5 HOH A 97 697 111 HOH HOH . I 5 HOH A 98 698 104 HOH HOH . I 5 HOH A 99 699 242 HOH HOH . I 5 HOH A 100 700 120 HOH HOH . I 5 HOH A 101 701 268 HOH HOH . I 5 HOH A 102 702 126 HOH HOH . I 5 HOH A 103 703 183 HOH HOH . I 5 HOH A 104 704 215 HOH HOH . I 5 HOH A 105 705 82 HOH HOH . I 5 HOH A 106 706 259 HOH HOH . I 5 HOH A 107 707 37 HOH HOH . I 5 HOH A 108 708 154 HOH HOH . I 5 HOH A 109 709 156 HOH HOH . I 5 HOH A 110 710 177 HOH HOH . I 5 HOH A 111 711 243 HOH HOH . I 5 HOH A 112 712 118 HOH HOH . I 5 HOH A 113 713 2 HOH HOH . I 5 HOH A 114 714 134 HOH HOH . I 5 HOH A 115 715 144 HOH HOH . I 5 HOH A 116 716 61 HOH HOH . I 5 HOH A 117 717 98 HOH HOH . I 5 HOH A 118 718 191 HOH HOH . I 5 HOH A 119 719 100 HOH HOH . I 5 HOH A 120 720 262 HOH HOH . I 5 HOH A 121 721 66 HOH HOH . I 5 HOH A 122 722 272 HOH HOH . I 5 HOH A 123 723 232 HOH HOH . I 5 HOH A 124 724 62 HOH HOH . I 5 HOH A 125 725 27 HOH HOH . I 5 HOH A 126 726 297 HOH HOH . I 5 HOH A 127 727 103 HOH HOH . I 5 HOH A 128 728 8 HOH HOH . I 5 HOH A 129 729 187 HOH HOH . I 5 HOH A 130 730 11 HOH HOH . I 5 HOH A 131 731 219 HOH HOH . I 5 HOH A 132 732 244 HOH HOH . I 5 HOH A 133 733 220 HOH HOH . I 5 HOH A 134 734 60 HOH HOH . I 5 HOH A 135 735 56 HOH HOH . I 5 HOH A 136 736 249 HOH HOH . I 5 HOH A 137 737 41 HOH HOH . I 5 HOH A 138 738 30 HOH HOH . I 5 HOH A 139 739 206 HOH HOH . I 5 HOH A 140 740 81 HOH HOH . I 5 HOH A 141 741 110 HOH HOH . I 5 HOH A 142 742 141 HOH HOH . I 5 HOH A 143 743 29 HOH HOH . I 5 HOH A 144 744 39 HOH HOH . I 5 HOH A 145 745 276 HOH HOH . I 5 HOH A 146 746 124 HOH HOH . I 5 HOH A 147 747 38 HOH HOH . I 5 HOH A 148 748 152 HOH HOH . I 5 HOH A 149 749 116 HOH HOH . I 5 HOH A 150 750 165 HOH HOH . I 5 HOH A 151 751 48 HOH HOH . I 5 HOH A 152 752 84 HOH HOH . I 5 HOH A 153 753 1 HOH HOH . I 5 HOH A 154 754 79 HOH HOH . I 5 HOH A 155 755 287 HOH HOH . I 5 HOH A 156 756 22 HOH HOH . I 5 HOH A 157 757 69 HOH HOH . I 5 HOH A 158 758 21 HOH HOH . I 5 HOH A 159 759 90 HOH HOH . I 5 HOH A 160 760 142 HOH HOH . I 5 HOH A 161 761 295 HOH HOH . I 5 HOH A 162 762 59 HOH HOH . I 5 HOH A 163 763 176 HOH HOH . I 5 HOH A 164 764 72 HOH HOH . I 5 HOH A 165 765 67 HOH HOH . I 5 HOH A 166 766 78 HOH HOH . I 5 HOH A 167 767 19 HOH HOH . I 5 HOH A 168 768 89 HOH HOH . I 5 HOH A 169 769 145 HOH HOH . I 5 HOH A 170 770 26 HOH HOH . I 5 HOH A 171 771 44 HOH HOH . I 5 HOH A 172 772 20 HOH HOH . I 5 HOH A 173 773 117 HOH HOH . I 5 HOH A 174 774 230 HOH HOH . I 5 HOH A 175 775 16 HOH HOH . I 5 HOH A 176 776 256 HOH HOH . I 5 HOH A 177 777 40 HOH HOH . I 5 HOH A 178 778 80 HOH HOH . I 5 HOH A 179 779 109 HOH HOH . I 5 HOH A 180 780 5 HOH HOH . I 5 HOH A 181 781 83 HOH HOH . I 5 HOH A 182 782 288 HOH HOH . I 5 HOH A 183 783 45 HOH HOH . I 5 HOH A 184 784 106 HOH HOH . I 5 HOH A 185 785 298 HOH HOH . I 5 HOH A 186 786 135 HOH HOH . I 5 HOH A 187 787 169 HOH HOH . I 5 HOH A 188 788 254 HOH HOH . I 5 HOH A 189 789 123 HOH HOH . I 5 HOH A 190 790 88 HOH HOH . I 5 HOH A 191 791 184 HOH HOH . I 5 HOH A 192 792 97 HOH HOH . I 5 HOH A 193 793 125 HOH HOH . I 5 HOH A 194 794 235 HOH HOH . I 5 HOH A 195 795 263 HOH HOH . I 5 HOH A 196 796 73 HOH HOH . I 5 HOH A 197 797 91 HOH HOH . I 5 HOH A 198 798 12 HOH HOH . I 5 HOH A 199 799 179 HOH HOH . I 5 HOH A 200 800 299 HOH HOH . I 5 HOH A 201 801 65 HOH HOH . I 5 HOH A 202 802 114 HOH HOH . I 5 HOH A 203 803 147 HOH HOH . I 5 HOH A 204 804 217 HOH HOH . I 5 HOH A 205 805 74 HOH HOH . I 5 HOH A 206 806 143 HOH HOH . I 5 HOH A 207 807 285 HOH HOH . I 5 HOH A 208 808 173 HOH HOH . I 5 HOH A 209 809 218 HOH HOH . I 5 HOH A 210 810 164 HOH HOH . I 5 HOH A 211 811 17 HOH HOH . I 5 HOH A 212 812 102 HOH HOH . I 5 HOH A 213 813 105 HOH HOH . I 5 HOH A 214 814 214 HOH HOH . I 5 HOH A 215 815 148 HOH HOH . I 5 HOH A 216 816 170 HOH HOH . I 5 HOH A 217 817 174 HOH HOH . I 5 HOH A 218 818 28 HOH HOH . I 5 HOH A 219 819 93 HOH HOH . I 5 HOH A 220 820 96 HOH HOH . I 5 HOH A 221 821 246 HOH HOH . I 5 HOH A 222 822 122 HOH HOH . I 5 HOH A 223 823 70 HOH HOH . I 5 HOH A 224 824 180 HOH HOH . I 5 HOH A 225 825 113 HOH HOH . I 5 HOH A 226 826 275 HOH HOH . I 5 HOH A 227 827 204 HOH HOH . I 5 HOH A 228 828 63 HOH HOH . I 5 HOH A 229 829 229 HOH HOH . I 5 HOH A 230 830 171 HOH HOH . I 5 HOH A 231 831 301 HOH HOH . I 5 HOH A 232 832 236 HOH HOH . I 5 HOH A 233 833 181 HOH HOH . I 5 HOH A 234 834 248 HOH HOH . I 5 HOH A 235 835 85 HOH HOH . I 5 HOH A 236 836 153 HOH HOH . I 5 HOH A 237 837 175 HOH HOH . I 5 HOH A 238 838 131 HOH HOH . I 5 HOH A 239 839 300 HOH HOH . I 5 HOH A 240 840 267 HOH HOH . I 5 HOH A 241 841 253 HOH HOH . I 5 HOH A 242 842 257 HOH HOH . I 5 HOH A 243 843 163 HOH HOH . I 5 HOH A 244 844 133 HOH HOH . I 5 HOH A 245 845 292 HOH HOH . I 5 HOH A 246 846 296 HOH HOH . I 5 HOH A 247 847 71 HOH HOH . I 5 HOH A 248 848 291 HOH HOH . I 5 HOH A 249 849 252 HOH HOH . I 5 HOH A 250 850 245 HOH HOH . I 5 HOH A 251 851 228 HOH HOH . I 5 HOH A 252 852 240 HOH HOH . I 5 HOH A 253 853 209 HOH HOH . I 5 HOH A 254 854 222 HOH HOH . I 5 HOH A 255 855 294 HOH HOH . I 5 HOH A 256 856 157 HOH HOH . I 5 HOH A 257 857 231 HOH HOH . I 5 HOH A 258 858 282 HOH HOH . I 5 HOH A 259 859 190 HOH HOH . I 5 HOH A 260 860 47 HOH HOH . I 5 HOH A 261 861 149 HOH HOH . I 5 HOH A 262 862 192 HOH HOH . I 5 HOH A 263 863 207 HOH HOH . I 5 HOH A 264 864 238 HOH HOH . I 5 HOH A 265 865 94 HOH HOH . I 5 HOH A 266 866 278 HOH HOH . I 5 HOH A 267 867 150 HOH HOH . I 5 HOH A 268 868 205 HOH HOH . I 5 HOH A 269 869 279 HOH HOH . I 5 HOH A 270 870 203 HOH HOH . I 5 HOH A 271 871 284 HOH HOH . I 5 HOH A 272 872 196 HOH HOH . I 5 HOH A 273 873 198 HOH HOH . I 5 HOH A 274 874 247 HOH HOH . I 5 HOH A 275 875 151 HOH HOH . I 5 HOH A 276 876 49 HOH HOH . I 5 HOH A 277 877 129 HOH HOH . I 5 HOH A 278 878 283 HOH HOH . I 5 HOH A 279 879 234 HOH HOH . I 5 HOH A 280 880 50 HOH HOH . I 5 HOH A 281 881 162 HOH HOH . I 5 HOH A 282 882 68 HOH HOH . I 5 HOH A 283 883 166 HOH HOH . I 5 HOH A 284 884 167 HOH HOH . I 5 HOH A 285 885 225 HOH HOH . I 5 HOH A 286 886 274 HOH HOH . I 5 HOH A 287 887 224 HOH HOH . I 5 HOH A 288 888 193 HOH HOH . I 5 HOH A 289 889 189 HOH HOH . I 5 HOH A 290 890 168 HOH HOH . I 5 HOH A 291 891 210 HOH HOH . I 5 HOH A 292 892 201 HOH HOH . I 5 HOH A 293 893 119 HOH HOH . I 5 HOH A 294 894 241 HOH HOH . I 5 HOH A 295 895 239 HOH HOH . I 5 HOH A 296 896 200 HOH HOH . I 5 HOH A 297 897 265 HOH HOH . I 5 HOH A 298 898 233 HOH HOH . I 5 HOH A 299 899 86 HOH HOH . I 5 HOH A 300 900 281 HOH HOH . I 5 HOH A 301 901 202 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . D 4 11.108 19.981 17.763 1 42.47 ? C FMT 502 A 1 HETATM 2 O O1 FMT . . . D 4 10.845 19.753 16.598 1 45.31 ? O1 FMT 502 A 1 HETATM 3 O O2 FMT . . . D 4 11.346 19.009 18.67 1 38.75 ? O2 FMT 502 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 3 #