data_8PXO # _model_server_result.job_id JT19RzeQseyoBiFd92bYpg _model_server_result.datetime_utc '2024-11-07 03:23:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pxo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":703}' # _entry.id 8PXO # _exptl.entry_id 8PXO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 485.617 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (2S,5S,8S)-14-cyclopentyloxy-2-(2-methylpropyl)-5-(phenylmethyl)-3,6,17-triazatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-1(10),11,13,15-tetraene-4,7-dione _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PXO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PXO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 K N N ? 6 L N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n G NAG 1 X 1 NAG X 1102 NAG 4 n G NAG 2 X 2 NAG X 1103 NAG 4 n H NAG 1 G 1 NAG X 1104 NAG 4 n H NAG 2 G 2 NAG X 1105 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 22 D CYS 22 1_555 A SG CYS 96 D CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf2 B SG CYS 23 E CYS 23 1_555 B SG CYS 88 E CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf3 C SG CYS 22 F CYS 22 1_555 C SG CYS 96 F CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 D SG CYS 602 B CYS 592 1_555 D SG CYS 618 B CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 D SG CYS 613 B CYS 603 1_555 E SG CYS 613 A CYS 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf6 E SG CYS 602 A CYS 592 1_555 E SG CYS 618 A CYS 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf7 F SG CYS 23 C CYS 23 1_555 F SG CYS 88 C CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? covale ? covale1 G O4 NAG . X NAG 1 1_555 G C1 NAG . X NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.43 ? covale ? covale2 H O4 NAG . G NAG 1 1_555 H C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? # _chem_comp.formula 'C30 H35 N3 O3' _chem_comp.formula_weight 485.617 _chem_comp.id I3T _chem_comp.mon_nstd_flag . _chem_comp.name (2S,5S,8S)-14-cyclopentyloxy-2-(2-methylpropyl)-5-(phenylmethyl)-3,6,17-triazatetracyclo[8.7.0.0^{3,8}.0^{11,16}]heptadeca-1(10),11,13,15-tetraene-4,7-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C20 C19 I3T sing 227 n n C20 C21 I3T sing 228 n n C19 C18 I3T sing 229 n n C21 C17 I3T sing 230 n n C18 C17 I3T sing 231 n n C17 O01 I3T sing 232 n n O01 C02 I3T sing 233 n n C02 C03 I3T doub 234 n y C02 C01 I3T sing 235 n y C03 C04 I3T sing 236 n y C01 C06 I3T doub 237 n y C04 N01 I3T sing 238 n y C04 C05 I3T doub 239 n y N01 C07 I3T sing 240 n y C06 C05 I3T sing 241 n y C05 C08 I3T sing 242 n y C14 C13 I3T sing 243 n n C07 C08 I3T doub 244 n y C07 C09 I3T sing 245 n n C08 C11 I3T sing 246 n n C12 C13 I3T sing 247 n n C12 C09 I3T sing 248 n n C13 C15 I3T sing 249 n n C09 N02 I3T sing 250 n n C11 C10 I3T sing 251 n n N02 C10 I3T sing 252 n n N02 C22 I3T sing 253 n n O02 C22 I3T doub 254 n n C10 C16 I3T sing 255 n n C22 C23 I3T sing 256 n n C16 O03 I3T doub 257 n n C16 N03 I3T sing 258 n n C23 N03 I3T sing 259 n n C23 C24 I3T sing 260 n n C30 C29 I3T doub 261 n y C30 C25 I3T sing 262 n y C29 C28 I3T sing 263 n y C24 C25 I3T sing 264 n n C25 C26 I3T doub 265 n y C28 C27 I3T doub 266 n y C26 C27 I3T sing 267 n y C10 H1 I3T sing 268 n n C13 H2 I3T sing 269 n n C15 H3 I3T sing 270 n n C15 H4 I3T sing 271 n n C15 H5 I3T sing 272 n n C17 H6 I3T sing 273 n n C20 H7 I3T sing 274 n n C20 H8 I3T sing 275 n n C21 H9 I3T sing 276 n n C21 H10 I3T sing 277 n n C24 H11 I3T sing 278 n n C24 H12 I3T sing 279 n n C26 H13 I3T sing 280 n n C28 H14 I3T sing 281 n n C01 H15 I3T sing 282 n n C03 H16 I3T sing 283 n n C06 H17 I3T sing 284 n n C09 H18 I3T sing 285 n n C11 H19 I3T sing 286 n n C11 H20 I3T sing 287 n n C12 H21 I3T sing 288 n n C12 H22 I3T sing 289 n n C14 H23 I3T sing 290 n n C14 H24 I3T sing 291 n n C14 H25 I3T sing 292 n n C18 H26 I3T sing 293 n n C18 H27 I3T sing 294 n n C19 H28 I3T sing 295 n n C19 H29 I3T sing 296 n n C23 H30 I3T sing 297 n n C27 H31 I3T sing 298 n n C29 H32 I3T sing 299 n n C30 H33 I3T sing 300 n n N01 H34 I3T sing 301 n n N03 H35 I3T sing 302 n n # _atom_sites.entry_id 8PXO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code I 5 CLR B 1 701 702 CLR CLR . J 5 CLR B 1 702 706 CLR CLR . K 6 I3T B 1 703 1202 I3T LIG . L 6 I3T B 1 704 1203 I3T LIG . M 5 CLR A 1 701 702 CLR CLR . N 5 CLR A 1 702 703 CLR CLR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 I3T . . . K 6 131.866 124.299 133.151 1 39.2 ? C10 I3T 703 B 1 HETATM 2 C C13 I3T . . . K 6 132.981 120.763 131.202 1 39.2 ? C13 I3T 703 B 1 HETATM 3 C C15 I3T . . . K 6 133.473 119.886 132.381 1 39.2 ? C15 I3T 703 B 1 HETATM 4 C C17 I3T . . . K 6 129.166 125.552 124.619 1 39.2 ? C17 I3T 703 B 1 HETATM 5 C C20 I3T . . . K 6 128.771 125.277 122.168 1 39.2 ? C20 I3T 703 B 1 HETATM 6 C C21 I3T . . . K 6 128.407 126.154 123.389 1 39.2 ? C21 I3T 703 B 1 HETATM 7 C C22 I3T . . . K 6 134.167 123.559 133.593 1 39.2 ? C22 I3T 703 B 1 HETATM 8 C C24 I3T . . . K 6 135.164 123.465 136.043 1 39.2 ? C24 I3T 703 B 1 HETATM 9 C C26 I3T . . . K 6 134.457 121.274 137.265 1 39.2 ? C26 I3T 703 B 1 HETATM 10 C C28 I3T . . . K 6 135.131 119.067 136.444 1 39.2 ? C28 I3T 703 B 1 HETATM 11 C C01 I3T . . . K 6 128.215 125.334 128.25 1 39.2 ? C01 I3T 703 B 1 HETATM 12 C C02 I3T . . . K 6 129.01 125.288 127.053 1 39.2 ? C02 I3T 703 B 1 HETATM 13 C C03 I3T . . . K 6 130.358 124.876 127.176 1 39.2 ? C03 I3T 703 B 1 HETATM 14 C C04 I3T . . . K 6 130.884 124.516 128.487 1 39.2 ? C04 I3T 703 B 1 HETATM 15 C C05 I3T . . . K 6 130.079 124.571 129.659 1 39.2 ? C05 I3T 703 B 1 HETATM 16 C C06 I3T . . . K 6 128.732 124.989 129.499 1 39.2 ? C06 I3T 703 B 1 HETATM 17 C C07 I3T . . . K 6 132.19 123.846 130.334 1 39.2 ? C07 I3T 703 B 1 HETATM 18 C C08 I3T . . . K 6 130.913 124.148 130.802 1 39.2 ? C08 I3T 703 B 1 HETATM 19 C C09 I3T . . . K 6 133.381 123.369 131.216 1 39.2 ? C09 I3T 703 B 1 HETATM 20 C C11 I3T . . . K 6 130.576 124.018 132.261 1 39.2 ? C11 I3T 703 B 1 HETATM 21 C C12 I3T . . . K 6 133.967 121.929 130.902 1 39.2 ? C12 I3T 703 B 1 HETATM 22 C C14 I3T . . . K 6 132.783 119.889 129.945 1 39.2 ? C14 I3T 703 B 1 HETATM 23 C C16 I3T . . . K 6 131.644 124.018 134.64 1 39.2 ? C16 I3T 703 B 1 HETATM 24 C C18 I3T . . . K 6 129.448 124.074 124.206 1 39.2 ? C18 I3T 703 B 1 HETATM 25 C C19 I3T . . . K 6 128.943 123.859 122.76 1 39.2 ? C19 I3T 703 B 1 HETATM 26 C C23 I3T . . . K 6 134.081 124.065 135.035 1 39.2 ? C23 I3T 703 B 1 HETATM 27 C C25 I3T . . . K 6 135.139 121.917 136.203 1 39.2 ? C25 I3T 703 B 1 HETATM 28 C C27 I3T . . . K 6 134.452 119.864 137.388 1 39.2 ? C27 I3T 703 B 1 HETATM 29 C C29 I3T . . . K 6 135.811 119.693 135.382 1 39.2 ? C29 I3T 703 B 1 HETATM 30 C C30 I3T . . . K 6 135.809 121.097 135.271 1 39.2 ? C30 I3T 703 B 1 HETATM 31 N N01 I3T . . . K 6 132.178 124.072 128.917 1 39.2 ? N01 I3T 703 B 1 HETATM 32 N N02 I3T . . . K 6 133.079 123.486 132.728 1 39.2 ? N02 I3T 703 B 1 HETATM 33 N N03 I3T . . . K 6 132.682 123.842 135.506 1 39.2 ? N03 I3T 703 B 1 HETATM 34 O O01 I3T . . . K 6 128.403 125.653 125.838 1 39.2 ? O01 I3T 703 B 1 HETATM 35 O O02 I3T . . . K 6 135.329 123.177 133.147 1 39.2 ? O02 I3T 703 B 1 HETATM 36 O O03 I3T . . . K 6 130.426 123.94 135.09 1 39.2 ? O03 I3T 703 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 36 #