data_8PY0 # _model_server_result.job_id l32gJ9znPLF7ZZrSpGOFSg _model_server_result.datetime_utc '2025-03-29 20:08:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8py0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":200}' # _entry.id 8PY0 # _exptl.entry_id 8PY0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PY0 _cell.length_a 58.379 _cell.length_b 58.379 _cell.length_c 156.462 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PY0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1 B,E,F,H 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 122 A ASP 130 1_555 D NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.11 ? metalc ? metalc2 A OG SER 124 A SER 132 1_555 D NA NA . A NA 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.916 ? metalc ? metalc3 D NA NA . A NA 201 1_555 G O HOH . A HOH 398 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.904 ? metalc ? metalc4 D NA NA . A NA 201 1_555 G O HOH . A HOH 416 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.644 ? metalc ? metalc5 D NA NA . A NA 201 1_555 H O HOH . B HOH 334 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.602 ? metalc ? metalc6 F NA NA . B NA 201 1_555 H O HOH . B HOH 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.083 ? metalc ? metalc7 F NA NA . B NA 201 1_555 H O HOH . B HOH 352 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.193 ? metalc ? metalc8 F NA NA . B NA 201 1_555 H O HOH . B HOH 377 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 83 n n C O2 FMT sing 84 n n C H FMT sing 85 n n O2 HO2 FMT sing 86 n n # _atom_sites.entry_id 8PY0 _atom_sites.fract_transf_matrix[1][1] 0.017129 _atom_sites.fract_transf_matrix[1][2] 0.00989 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.019779 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006391 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMT A 1 200 200 FMT FMT . D 3 NA A 1 201 201 NA NA . E 2 FMT B 1 200 200 FMT FMT . F 3 NA B 1 201 201 NA NA . G 4 HOH A 1 301 256 HOH HOH . G 4 HOH A 2 302 237 HOH HOH . G 4 HOH A 3 303 311 HOH HOH . G 4 HOH A 4 304 229 HOH HOH . G 4 HOH A 5 305 254 HOH HOH . G 4 HOH A 6 306 312 HOH HOH . G 4 HOH A 7 307 274 HOH HOH . G 4 HOH A 8 308 253 HOH HOH . G 4 HOH A 9 309 246 HOH HOH . G 4 HOH A 10 310 283 HOH HOH . G 4 HOH A 11 311 303 HOH HOH . G 4 HOH A 12 312 285 HOH HOH . G 4 HOH A 13 313 233 HOH HOH . G 4 HOH A 14 314 296 HOH HOH . G 4 HOH A 15 315 266 HOH HOH . G 4 HOH A 16 316 316 HOH HOH . G 4 HOH A 17 317 307 HOH HOH . G 4 HOH A 18 318 301 HOH HOH . G 4 HOH A 19 319 280 HOH HOH . G 4 HOH A 20 320 226 HOH HOH . G 4 HOH A 21 321 334 HOH HOH . G 4 HOH A 22 322 327 HOH HOH . G 4 HOH A 23 323 298 HOH HOH . G 4 HOH A 24 324 276 HOH HOH . G 4 HOH A 25 325 294 HOH HOH . G 4 HOH A 26 326 331 HOH HOH . G 4 HOH A 27 327 236 HOH HOH . G 4 HOH A 28 328 265 HOH HOH . G 4 HOH A 29 329 212 HOH HOH . G 4 HOH A 30 330 248 HOH HOH . G 4 HOH A 31 331 238 HOH HOH . G 4 HOH A 32 332 324 HOH HOH . G 4 HOH A 33 333 234 HOH HOH . G 4 HOH A 34 334 252 HOH HOH . G 4 HOH A 35 335 230 HOH HOH . G 4 HOH A 36 336 203 HOH HOH . G 4 HOH A 37 337 245 HOH HOH . G 4 HOH A 38 338 281 HOH HOH . G 4 HOH A 39 339 219 HOH HOH . G 4 HOH A 40 340 304 HOH HOH . G 4 HOH A 41 341 251 HOH HOH . G 4 HOH A 42 342 333 HOH HOH . G 4 HOH A 43 343 217 HOH HOH . G 4 HOH A 44 344 320 HOH HOH . G 4 HOH A 45 345 231 HOH HOH . G 4 HOH A 46 346 242 HOH HOH . G 4 HOH A 47 347 260 HOH HOH . G 4 HOH A 48 348 290 HOH HOH . G 4 HOH A 49 349 269 HOH HOH . G 4 HOH A 50 350 295 HOH HOH . G 4 HOH A 51 351 278 HOH HOH . G 4 HOH A 52 352 272 HOH HOH . G 4 HOH A 53 353 207 HOH HOH . G 4 HOH A 54 354 225 HOH HOH . G 4 HOH A 55 355 302 HOH HOH . G 4 HOH A 56 356 228 HOH HOH . G 4 HOH A 57 357 323 HOH HOH . G 4 HOH A 58 358 335 HOH HOH . G 4 HOH A 59 359 241 HOH HOH . G 4 HOH A 60 360 215 HOH HOH . G 4 HOH A 61 361 221 HOH HOH . G 4 HOH A 62 362 257 HOH HOH . G 4 HOH A 63 363 227 HOH HOH . G 4 HOH A 64 364 262 HOH HOH . G 4 HOH A 65 365 213 HOH HOH . G 4 HOH A 66 366 239 HOH HOH . G 4 HOH A 67 367 299 HOH HOH . G 4 HOH A 68 368 293 HOH HOH . G 4 HOH A 69 369 264 HOH HOH . G 4 HOH A 70 370 300 HOH HOH . G 4 HOH A 71 371 206 HOH HOH . G 4 HOH A 72 372 210 HOH HOH . G 4 HOH A 73 373 214 HOH HOH . G 4 HOH A 74 374 205 HOH HOH . G 4 HOH A 75 375 308 HOH HOH . G 4 HOH A 76 376 284 HOH HOH . G 4 HOH A 77 377 223 HOH HOH . G 4 HOH A 78 378 235 HOH HOH . G 4 HOH A 79 379 275 HOH HOH . G 4 HOH A 80 380 289 HOH HOH . G 4 HOH A 81 381 263 HOH HOH . G 4 HOH A 82 382 209 HOH HOH . G 4 HOH A 83 383 259 HOH HOH . G 4 HOH A 84 384 318 HOH HOH . G 4 HOH A 85 385 314 HOH HOH . G 4 HOH A 86 386 216 HOH HOH . G 4 HOH A 87 387 270 HOH HOH . G 4 HOH A 88 388 329 HOH HOH . G 4 HOH A 89 389 243 HOH HOH . G 4 HOH A 90 390 288 HOH HOH . G 4 HOH A 91 391 220 HOH HOH . G 4 HOH A 92 392 244 HOH HOH . G 4 HOH A 93 393 313 HOH HOH . G 4 HOH A 94 394 277 HOH HOH . G 4 HOH A 95 395 214 HOH HOH . G 4 HOH A 96 396 325 HOH HOH . G 4 HOH A 97 397 271 HOH HOH . G 4 HOH A 98 398 240 HOH HOH . G 4 HOH A 99 399 211 HOH HOH . G 4 HOH A 100 400 309 HOH HOH . G 4 HOH A 101 401 250 HOH HOH . G 4 HOH A 102 402 258 HOH HOH . G 4 HOH A 103 403 268 HOH HOH . G 4 HOH A 104 404 202 HOH HOH . G 4 HOH A 105 405 222 HOH HOH . G 4 HOH A 106 406 261 HOH HOH . G 4 HOH A 107 407 267 HOH HOH . G 4 HOH A 108 408 339 HOH HOH . G 4 HOH A 109 409 322 HOH HOH . G 4 HOH A 110 410 282 HOH HOH . G 4 HOH A 111 411 249 HOH HOH . G 4 HOH A 112 412 338 HOH HOH . G 4 HOH A 113 413 218 HOH HOH . G 4 HOH A 114 414 286 HOH HOH . G 4 HOH A 115 415 224 HOH HOH . G 4 HOH A 116 416 297 HOH HOH . G 4 HOH A 117 417 208 HOH HOH . G 4 HOH A 118 418 255 HOH HOH . G 4 HOH A 119 419 341 HOH HOH . G 4 HOH A 120 420 279 HOH HOH . G 4 HOH A 121 421 286 HOH HOH . G 4 HOH A 122 422 247 HOH HOH . G 4 HOH A 123 423 306 HOH HOH . G 4 HOH A 124 424 287 HOH HOH . G 4 HOH A 125 425 326 HOH HOH . H 4 HOH B 1 301 298 HOH HOH . H 4 HOH B 2 302 320 HOH HOH . H 4 HOH B 3 303 232 HOH HOH . H 4 HOH B 4 304 244 HOH HOH . H 4 HOH B 5 305 235 HOH HOH . H 4 HOH B 6 306 240 HOH HOH . H 4 HOH B 7 307 292 HOH HOH . H 4 HOH B 8 308 242 HOH HOH . H 4 HOH B 9 309 257 HOH HOH . H 4 HOH B 10 310 282 HOH HOH . H 4 HOH B 11 311 330 HOH HOH . H 4 HOH B 12 312 254 HOH HOH . H 4 HOH B 13 313 313 HOH HOH . H 4 HOH B 14 314 259 HOH HOH . H 4 HOH B 15 315 238 HOH HOH . H 4 HOH B 16 316 231 HOH HOH . H 4 HOH B 17 317 308 HOH HOH . H 4 HOH B 18 318 206 HOH HOH . H 4 HOH B 19 319 304 HOH HOH . H 4 HOH B 20 320 301 HOH HOH . H 4 HOH B 21 321 260 HOH HOH . H 4 HOH B 22 322 204 HOH HOH . H 4 HOH B 23 323 335 HOH HOH . H 4 HOH B 24 324 302 HOH HOH . H 4 HOH B 25 325 284 HOH HOH . H 4 HOH B 26 326 339 HOH HOH . H 4 HOH B 27 327 222 HOH HOH . H 4 HOH B 28 328 236 HOH HOH . H 4 HOH B 29 329 287 HOH HOH . H 4 HOH B 30 330 243 HOH HOH . H 4 HOH B 31 331 289 HOH HOH . H 4 HOH B 32 332 224 HOH HOH . H 4 HOH B 33 333 249 HOH HOH . H 4 HOH B 34 334 336 HOH HOH . H 4 HOH B 35 335 264 HOH HOH . H 4 HOH B 36 336 207 HOH HOH . H 4 HOH B 37 337 258 HOH HOH . H 4 HOH B 38 338 247 HOH HOH . H 4 HOH B 39 339 273 HOH HOH . H 4 HOH B 40 340 291 HOH HOH . H 4 HOH B 41 341 270 HOH HOH . H 4 HOH B 42 342 212 HOH HOH . H 4 HOH B 43 343 345 HOH HOH . H 4 HOH B 44 344 252 HOH HOH . H 4 HOH B 45 345 319 HOH HOH . H 4 HOH B 46 346 280 HOH HOH . H 4 HOH B 47 347 352 HOH HOH . H 4 HOH B 48 348 205 HOH HOH . H 4 HOH B 49 349 278 HOH HOH . H 4 HOH B 50 350 342 HOH HOH . H 4 HOH B 51 351 281 HOH HOH . H 4 HOH B 52 352 232 HOH HOH . H 4 HOH B 53 353 266 HOH HOH . H 4 HOH B 54 354 299 HOH HOH . H 4 HOH B 55 355 216 HOH HOH . H 4 HOH B 56 356 211 HOH HOH . H 4 HOH B 57 357 253 HOH HOH . H 4 HOH B 58 358 250 HOH HOH . H 4 HOH B 59 359 326 HOH HOH . H 4 HOH B 60 360 204 HOH HOH . H 4 HOH B 61 361 209 HOH HOH . H 4 HOH B 62 362 226 HOH HOH . H 4 HOH B 63 363 215 HOH HOH . H 4 HOH B 64 364 275 HOH HOH . H 4 HOH B 65 365 217 HOH HOH . H 4 HOH B 66 366 248 HOH HOH . H 4 HOH B 67 367 218 HOH HOH . H 4 HOH B 68 368 227 HOH HOH . H 4 HOH B 69 369 203 HOH HOH . H 4 HOH B 70 370 239 HOH HOH . H 4 HOH B 71 371 228 HOH HOH . H 4 HOH B 72 372 323 HOH HOH . H 4 HOH B 73 373 225 HOH HOH . H 4 HOH B 74 374 277 HOH HOH . H 4 HOH B 75 375 315 HOH HOH . H 4 HOH B 76 376 202 HOH HOH . H 4 HOH B 77 377 210 HOH HOH . H 4 HOH B 78 378 300 HOH HOH . H 4 HOH B 79 379 263 HOH HOH . H 4 HOH B 80 380 268 HOH HOH . H 4 HOH B 81 381 230 HOH HOH . H 4 HOH B 82 382 303 HOH HOH . H 4 HOH B 83 383 265 HOH HOH . H 4 HOH B 84 384 309 HOH HOH . H 4 HOH B 85 385 262 HOH HOH . H 4 HOH B 86 386 327 HOH HOH . H 4 HOH B 87 387 233 HOH HOH . H 4 HOH B 88 388 307 HOH HOH . H 4 HOH B 89 389 221 HOH HOH . H 4 HOH B 90 390 267 HOH HOH . H 4 HOH B 91 391 213 HOH HOH . H 4 HOH B 92 392 229 HOH HOH . H 4 HOH B 93 393 351 HOH HOH . H 4 HOH B 94 394 261 HOH HOH . H 4 HOH B 95 395 343 HOH HOH . H 4 HOH B 96 396 293 HOH HOH . H 4 HOH B 97 397 341 HOH HOH . H 4 HOH B 98 398 285 HOH HOH . H 4 HOH B 99 399 349 HOH HOH . H 4 HOH B 100 400 223 HOH HOH . H 4 HOH B 101 401 220 HOH HOH . H 4 HOH B 102 402 296 HOH HOH . H 4 HOH B 103 403 310 HOH HOH . H 4 HOH B 104 404 283 HOH HOH . H 4 HOH B 105 405 354 HOH HOH . H 4 HOH B 106 406 325 HOH HOH . H 4 HOH B 107 407 271 HOH HOH . H 4 HOH B 108 408 331 HOH HOH . H 4 HOH B 109 409 311 HOH HOH . H 4 HOH B 110 410 241 HOH HOH . H 4 HOH B 111 411 324 HOH HOH . H 4 HOH B 112 412 269 HOH HOH . H 4 HOH B 113 413 237 HOH HOH . H 4 HOH B 114 414 329 HOH HOH . H 4 HOH B 115 415 328 HOH HOH . H 4 HOH B 116 416 256 HOH HOH . H 4 HOH B 117 417 219 HOH HOH . H 4 HOH B 118 418 245 HOH HOH . H 4 HOH B 119 419 208 HOH HOH . H 4 HOH B 120 420 274 HOH HOH . H 4 HOH B 121 421 246 HOH HOH . H 4 HOH B 122 422 251 HOH HOH . H 4 HOH B 123 423 234 HOH HOH . H 4 HOH B 124 424 332 HOH HOH . H 4 HOH B 125 425 338 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . E 2 1.72 -25.139 -35.325 1 15.85 ? C FMT 200 B 1 HETATM 2 O O1 FMT . . . E 2 2.458 -24.841 -34.389 1 14.61 ? O1 FMT 200 B 1 HETATM 3 O O2 FMT . . . E 2 0.489 -25.091 -35.281 1 15.67 ? O2 FMT 200 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 3 #