data_8PY9 # _model_server_result.job_id OSvkUXVhQX-IaKGVnVwrTA _model_server_result.datetime_utc '2024-10-14 10:16:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8py9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":403}' # _entry.id 8PY9 # _exptl.entry_id 8PY9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 363.43 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PY9 _cell.length_a 41.733 _cell.length_b 75.248 _cell.length_c 101.734 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PY9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 214 A HIS 214 1_555 F FE FE . A FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.164 ? metalc ? metalc2 A OD1 ASP 216 A ASP 216 1_555 F FE FE . A FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc3 A NE2 HIS 270 A HIS 270 1_555 F FE FE . A FE 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc4 D S17 ACV . A ACV 403 1_555 F FE FE . A FE 405 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc5 E O1 OXY . A OXY 404 1_555 F FE FE . A FE 405 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc6 E O1 OXY . A OXY 404 1_555 F FE FE . A FE 405 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc7 E O2 OXY . A OXY 404 1_555 F FE FE . A FE 405 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc8 F FE FE . A FE 405 1_555 H O HOH . A HOH 577 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? # _chem_comp.formula 'C14 H25 N3 O6 S' _chem_comp.formula_weight 363.43 _chem_comp.id ACV _chem_comp.mon_nstd_flag . _chem_comp.name L-D-(A-AMINOADIPOYL)-L-CYSTEINYL-D-VALINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 ACV sing 1 n n C1 O19 ACV sing 2 n n C1 O20 ACV doub 3 n n C2 C3 ACV sing 4 n n C2 N14 ACV sing 5 n n C2 H2 ACV sing 6 n n C3 C4 ACV sing 7 n n C3 H31 ACV sing 8 n n C3 H32A ACV sing 9 n n C4 C7 ACV sing 10 n n C4 H41 ACV sing 11 n n C4 H42 ACV sing 12 n n C7 C10 ACV sing 13 n n C7 H71 ACV sing 14 n n C7 H72 ACV sing 15 n n C10 N11 ACV sing 16 n n C10 O15 ACV doub 17 n n N11 C12 ACV sing 18 n n N11 HNB ACV sing 19 n n C12 C13 ACV sing 20 n n C12 C16 ACV sing 21 n n C12 H12 ACV sing 22 n n C13 O18 ACV doub 23 n n C13 N29 ACV sing 24 n n N14 HNE1 ACV sing 25 n n N14 HNE2 ACV sing 26 n n C16 S17 ACV sing 27 n n C16 H161 ACV sing 28 n n C16 H162 ACV sing 29 n n S17 HS7 ACV sing 30 n n O19 HOJ ACV sing 31 n n N29 C30 ACV sing 32 n n N29 HNT ACV sing 33 n n C30 C31 ACV sing 34 n n C30 C32 ACV sing 35 n n C30 H30 ACV sing 36 n n C31 O42 ACV doub 37 n n C31 O43 ACV sing 38 n n C32 C33 ACV sing 39 n n C32 C37 ACV sing 40 n n C32 H32 ACV sing 41 n n C33 H331 ACV sing 42 n n C33 H332 ACV sing 43 n n C33 H333 ACV sing 44 n n C37 H371 ACV sing 45 n n C37 H372 ACV sing 46 n n C37 H373 ACV sing 47 n n O43 HO ACV sing 48 n n # _atom_sites.entry_id 8PY9 _atom_sites.fract_transf_matrix[1][1] 0.023962 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013289 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 A 1 401 1 SO4 SO4 . C 2 SO4 A 1 402 2 SO4 SO4 . D 3 ACV A 1 403 1 ACV ACV . E 4 OXY A 1 404 1 OXY OXY . F 5 FE A 1 405 1 FE FE . G 6 IO0 A 1 406 1 IO0 TAL . H 7 HOH A 1 501 170 HOH HOH . H 7 HOH A 2 502 51 HOH HOH . H 7 HOH A 3 503 109 HOH HOH . H 7 HOH A 4 504 46 HOH HOH . H 7 HOH A 5 505 121 HOH HOH . H 7 HOH A 6 506 64 HOH HOH . H 7 HOH A 7 507 74 HOH HOH . H 7 HOH A 8 508 124 HOH HOH . H 7 HOH A 9 509 174 HOH HOH . H 7 HOH A 10 510 61 HOH HOH . H 7 HOH A 11 511 3 HOH HOH . H 7 HOH A 12 512 181 HOH HOH . H 7 HOH A 13 513 87 HOH HOH . H 7 HOH A 14 514 136 HOH HOH . H 7 HOH A 15 515 189 HOH HOH . H 7 HOH A 16 516 49 HOH HOH . H 7 HOH A 17 517 89 HOH HOH . H 7 HOH A 18 518 103 HOH HOH . H 7 HOH A 19 519 55 HOH HOH . H 7 HOH A 20 520 66 HOH HOH . H 7 HOH A 21 521 16 HOH HOH . H 7 HOH A 22 522 23 HOH HOH . H 7 HOH A 23 523 154 HOH HOH . H 7 HOH A 24 524 28 HOH HOH . H 7 HOH A 25 525 123 HOH HOH . H 7 HOH A 26 526 85 HOH HOH . H 7 HOH A 27 527 63 HOH HOH . H 7 HOH A 28 528 117 HOH HOH . H 7 HOH A 29 529 27 HOH HOH . H 7 HOH A 30 530 47 HOH HOH . H 7 HOH A 31 531 18 HOH HOH . H 7 HOH A 32 532 142 HOH HOH . H 7 HOH A 33 533 13 HOH HOH . H 7 HOH A 34 534 186 HOH HOH . H 7 HOH A 35 535 15 HOH HOH . H 7 HOH A 36 536 67 HOH HOH . H 7 HOH A 37 537 11 HOH HOH . H 7 HOH A 38 538 78 HOH HOH . H 7 HOH A 39 539 53 HOH HOH . H 7 HOH A 40 540 22 HOH HOH . H 7 HOH A 41 541 50 HOH HOH . H 7 HOH A 42 542 118 HOH HOH . H 7 HOH A 43 543 45 HOH HOH . H 7 HOH A 44 544 92 HOH HOH . H 7 HOH A 45 545 58 HOH HOH . H 7 HOH A 46 546 5 HOH HOH . H 7 HOH A 47 547 94 HOH HOH . H 7 HOH A 48 548 57 HOH HOH . H 7 HOH A 49 549 35 HOH HOH . H 7 HOH A 50 550 107 HOH HOH . H 7 HOH A 51 551 194 HOH HOH . H 7 HOH A 52 552 39 HOH HOH . H 7 HOH A 53 553 12 HOH HOH . H 7 HOH A 54 554 36 HOH HOH . H 7 HOH A 55 555 10 HOH HOH . H 7 HOH A 56 556 151 HOH HOH . H 7 HOH A 57 557 32 HOH HOH . H 7 HOH A 58 558 133 HOH HOH . H 7 HOH A 59 559 83 HOH HOH . H 7 HOH A 60 560 9 HOH HOH . H 7 HOH A 61 561 59 HOH HOH . H 7 HOH A 62 562 176 HOH HOH . H 7 HOH A 63 563 7 HOH HOH . H 7 HOH A 64 564 73 HOH HOH . H 7 HOH A 65 565 91 HOH HOH . H 7 HOH A 66 566 14 HOH HOH . H 7 HOH A 67 567 79 HOH HOH . H 7 HOH A 68 568 42 HOH HOH . H 7 HOH A 69 569 156 HOH HOH . H 7 HOH A 70 570 90 HOH HOH . H 7 HOH A 71 571 200 HOH HOH . H 7 HOH A 72 572 140 HOH HOH . H 7 HOH A 73 573 44 HOH HOH . H 7 HOH A 74 574 29 HOH HOH . H 7 HOH A 75 575 184 HOH HOH . H 7 HOH A 76 576 6 HOH HOH . H 7 HOH A 77 577 20 HOH HOH . H 7 HOH A 78 578 135 HOH HOH . H 7 HOH A 79 579 97 HOH HOH . H 7 HOH A 80 580 131 HOH HOH . H 7 HOH A 81 581 80 HOH HOH . H 7 HOH A 82 582 201 HOH HOH . H 7 HOH A 83 583 81 HOH HOH . H 7 HOH A 84 584 34 HOH HOH . H 7 HOH A 85 585 179 HOH HOH . H 7 HOH A 86 586 21 HOH HOH . H 7 HOH A 87 587 95 HOH HOH . H 7 HOH A 88 588 175 HOH HOH . H 7 HOH A 89 589 4 HOH HOH . H 7 HOH A 90 590 198 HOH HOH . H 7 HOH A 91 591 70 HOH HOH . H 7 HOH A 92 592 160 HOH HOH . H 7 HOH A 93 593 68 HOH HOH . H 7 HOH A 94 594 26 HOH HOH . H 7 HOH A 95 595 24 HOH HOH . H 7 HOH A 96 596 106 HOH HOH . H 7 HOH A 97 597 69 HOH HOH . H 7 HOH A 98 598 1 HOH HOH . H 7 HOH A 99 599 72 HOH HOH . H 7 HOH A 100 600 115 HOH HOH . H 7 HOH A 101 601 134 HOH HOH . H 7 HOH A 102 602 41 HOH HOH . H 7 HOH A 103 603 88 HOH HOH . H 7 HOH A 104 604 31 HOH HOH . H 7 HOH A 105 605 125 HOH HOH . H 7 HOH A 106 606 164 HOH HOH . H 7 HOH A 107 607 48 HOH HOH . H 7 HOH A 108 608 76 HOH HOH . H 7 HOH A 109 609 119 HOH HOH . H 7 HOH A 110 610 60 HOH HOH . H 7 HOH A 111 611 75 HOH HOH . H 7 HOH A 112 612 98 HOH HOH . H 7 HOH A 113 613 197 HOH HOH . H 7 HOH A 114 614 129 HOH HOH . H 7 HOH A 115 615 139 HOH HOH . H 7 HOH A 116 616 108 HOH HOH . H 7 HOH A 117 617 2 HOH HOH . H 7 HOH A 118 618 114 HOH HOH . H 7 HOH A 119 619 17 HOH HOH . H 7 HOH A 120 620 128 HOH HOH . H 7 HOH A 121 621 82 HOH HOH . H 7 HOH A 122 622 100 HOH HOH . H 7 HOH A 123 623 111 HOH HOH . H 7 HOH A 124 624 38 HOH HOH . H 7 HOH A 125 625 33 HOH HOH . H 7 HOH A 126 626 19 HOH HOH . H 7 HOH A 127 627 37 HOH HOH . H 7 HOH A 128 628 40 HOH HOH . H 7 HOH A 129 629 122 HOH HOH . H 7 HOH A 130 630 173 HOH HOH . H 7 HOH A 131 631 77 HOH HOH . H 7 HOH A 132 632 101 HOH HOH . H 7 HOH A 133 633 93 HOH HOH . H 7 HOH A 134 634 8 HOH HOH . H 7 HOH A 135 635 138 HOH HOH . H 7 HOH A 136 636 25 HOH HOH . H 7 HOH A 137 637 137 HOH HOH . H 7 HOH A 138 638 150 HOH HOH . H 7 HOH A 139 639 157 HOH HOH . H 7 HOH A 140 640 62 HOH HOH . H 7 HOH A 141 641 165 HOH HOH . H 7 HOH A 142 642 30 HOH HOH . H 7 HOH A 143 643 110 HOH HOH . H 7 HOH A 144 644 43 HOH HOH . H 7 HOH A 145 645 86 HOH HOH . H 7 HOH A 146 646 105 HOH HOH . H 7 HOH A 147 647 162 HOH HOH . H 7 HOH A 148 648 161 HOH HOH . H 7 HOH A 149 649 113 HOH HOH . H 7 HOH A 150 650 112 HOH HOH . H 7 HOH A 151 651 203 HOH HOH . H 7 HOH A 152 652 172 HOH HOH . H 7 HOH A 153 653 96 HOH HOH . H 7 HOH A 154 654 130 HOH HOH . H 7 HOH A 155 655 56 HOH HOH . H 7 HOH A 156 656 144 HOH HOH . H 7 HOH A 157 657 153 HOH HOH . H 7 HOH A 158 658 192 HOH HOH . H 7 HOH A 159 659 196 HOH HOH . H 7 HOH A 160 660 52 HOH HOH . H 7 HOH A 161 661 99 HOH HOH . H 7 HOH A 162 662 54 HOH HOH . H 7 HOH A 163 663 166 HOH HOH . H 7 HOH A 164 664 120 HOH HOH . H 7 HOH A 165 665 202 HOH HOH . H 7 HOH A 166 666 158 HOH HOH . H 7 HOH A 167 667 104 HOH HOH . H 7 HOH A 168 668 155 HOH HOH . H 7 HOH A 169 669 205 HOH HOH . H 7 HOH A 170 670 149 HOH HOH . H 7 HOH A 171 671 199 HOH HOH . H 7 HOH A 172 672 146 HOH HOH . H 7 HOH A 173 673 204 HOH HOH . H 7 HOH A 174 674 193 HOH HOH . H 7 HOH A 175 675 177 HOH HOH . H 7 HOH A 176 676 116 HOH HOH . H 7 HOH A 177 677 207 HOH HOH . H 7 HOH A 178 678 71 HOH HOH . H 7 HOH A 179 679 190 HOH HOH . H 7 HOH A 180 680 171 HOH HOH . H 7 HOH A 181 681 206 HOH HOH . H 7 HOH A 182 682 195 HOH HOH . H 7 HOH A 183 683 159 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 ACV . A . D 3 -6.084 3.848 -8.589 0.65 22.84 ? C1 ACV 403 A 1 HETATM 2 C C2 ACV . A . D 3 -6.968 2.691 -9.013 0.65 23.6 ? C2 ACV 403 A 1 HETATM 3 C C3 ACV . A . D 3 -6.385 1.441 -8.373 0.65 22.23 ? C3 ACV 403 A 1 HETATM 4 C C4 ACV . A . D 3 -7.208 0.211 -8.698 0.65 26.76 ? C4 ACV 403 A 1 HETATM 5 C C7 ACV . A . D 3 -6.5 -1.061 -8.276 0.65 25.45 ? C7 ACV 403 A 1 HETATM 6 C C10 ACV . A . D 3 -7.249 -2.292 -8.705 0.65 36.86 ? C10 ACV 403 A 1 HETATM 7 N N11 ACV . A . D 3 -7.816 -2.98 -7.716 0.65 36.04 ? N11 ACV 403 A 1 HETATM 8 C C12 ACV . A . D 3 -8.489 -4.249 -7.903 0.65 30.44 ? C12 ACV 403 A 1 HETATM 9 C C13 ACV . A . D 3 -9.985 -4.008 -7.773 0.65 35.63 ? C13 ACV 403 A 1 HETATM 10 N N14 ACV . A . D 3 -7.02 2.608 -10.482 0.65 25.22 ? N14 ACV 403 A 1 HETATM 11 O O15 ACV . A . D 3 -7.33 -2.626 -9.884 0.65 39.76 ? O15 ACV 403 A 1 HETATM 12 C C16 ACV . A . D 3 -8.122 -5.187 -6.765 0.65 34.45 ? C16 ACV 403 A 1 HETATM 13 S S17 ACV . A . D 3 -8.596 -4.556 -5.135 0.65 26.54 ? S17 ACV 403 A 1 HETATM 14 O O18 ACV . A . D 3 -10.438 -2.865 -7.793 0.65 38.15 ? O18 ACV 403 A 1 HETATM 15 O O19 ACV . A . D 3 -6.227 4.175 -7.334 0.65 24.32 ? O19 ACV 403 A 1 HETATM 16 O O20 ACV . A . D 3 -5.296 4.354 -9.349 0.65 24.2 ? O20 ACV 403 A 1 HETATM 17 N N29 ACV . A . D 3 -10.74 -5.087 -7.555 0.65 36.21 ? N29 ACV 403 A 1 HETATM 18 C C30 ACV . A . D 3 -12.123 -4.946 -7.136 0.65 33.69 ? C30 ACV 403 A 1 HETATM 19 C C31 ACV . A . D 3 -13.014 -5.842 -7.976 0.65 32.4 ? C31 ACV 403 A 1 HETATM 20 O O42 ACV . A . D 3 -14.198 -5.986 -7.732 0.65 31.34 ? O42 ACV 403 A 1 HETATM 21 O O43 ACV . A . D 3 -12.378 -6.424 -8.965 0.65 34.19 ? O43 ACV 403 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 14 _model_server_stats.element_count 21 #