data_8PYM # _model_server_result.job_id i_z1ioWteSJlu596xvl6gA _model_server_result.datetime_utc '2024-11-22 21:56:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1301}' # _entry.id 8PYM # _exptl.entry_id 8PYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 434.435 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 5,5-dimethyl-1-(1H-pyrrolo[2,3-b]pyridin-4-ylmethyl)-3-[4-(trifluoromethylsulfanyl)phenyl]imidazolidine-2,4-dione _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PYM _cell.length_a 69.35 _cell.length_b 69.35 _cell.length_c 142.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 87 AAA CYS 1059 1_555 D CD CD . AAA CD 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc2 A NE2 HIS 88 AAA HIS 1060 1_555 C NI NI . AAA NI 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc3 A NE2 HIS 89 AAA HIS 1061 1_555 C NI NI . AAA NI 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 A OD1 ASP 149 AAA ASP 1121 1_555 D CD CD . AAA CD 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc5 A OE1 GLU 190 AAA GLU 1162 1_555 D CD CD . AAA CD 1303 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc6 A OE2 GLU 190 AAA GLU 1162 1_555 D CD CD . AAA CD 1303 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc7 C NI NI . AAA NI 1302 1_555 E O HOH . AAA HOH 1428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'C20 H17 F3 N4 O2 S' _chem_comp.formula_weight 434.435 _chem_comp.id IED _chem_comp.mon_nstd_flag . _chem_comp.name 5,5-dimethyl-1-(1H-pyrrolo[2,3-b]pyridin-4-ylmethyl)-3-[4-(trifluoromethylsulfanyl)phenyl]imidazolidine-2,4-dione _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C30 C12 IED sing 152 n n C9 C8 IED doub 153 n y C9 C1 IED sing 154 n y C8 N7 IED sing 155 n y C10 N11 IED sing 156 n n C10 C2 IED sing 157 n n C12 N11 IED sing 158 n n C12 C29 IED sing 159 n n C12 C13 IED sing 160 n n C1 C2 IED sing 161 n y C1 C6 IED doub 162 n y N7 C6 IED sing 163 n y N11 C15 IED sing 164 n n C2 C3 IED doub 165 n y C13 O27 IED doub 166 n n C13 N14 IED sing 167 n n C6 N5 IED sing 168 n y C15 N14 IED sing 169 n n C15 O28 IED doub 170 n n N14 C16 IED sing 171 n n C3 C4 IED sing 172 n y C17 C16 IED doub 173 n y C17 C18 IED sing 174 n y C16 C21 IED sing 175 n y N5 C4 IED doub 176 n y C18 C19 IED doub 177 n y C21 C20 IED doub 178 n y F26 C23 IED sing 179 n n C19 C20 IED sing 180 n y C19 S22 IED sing 181 n n C23 S22 IED sing 182 n n C23 F24 IED sing 183 n n C23 F25 IED sing 184 n n C3 H1 IED sing 185 n n C8 H2 IED sing 186 n n C9 H3 IED sing 187 n n C10 H4 IED sing 188 n n C10 H5 IED sing 189 n n C20 H6 IED sing 190 n n C21 H7 IED sing 191 n n C30 H8 IED sing 192 n n C30 H9 IED sing 193 n n C30 H10 IED sing 194 n n C18 H11 IED sing 195 n n C17 H12 IED sing 196 n n C29 H13 IED sing 197 n n C29 H14 IED sing 198 n n C29 H15 IED sing 199 n n C4 H16 IED sing 200 n n N7 H17 IED sing 201 n n # _atom_sites.entry_id 8PYM _atom_sites.fract_transf_matrix[1][1] 0.01442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IED AAA 1 1301 3000 IED INH . C 3 NI AAA 1 1302 1 NI NI . D 4 CD AAA 1 1303 1 CD CD . E 5 HOH AAA 1 1401 56 HOH HOH . E 5 HOH AAA 2 1402 21 HOH HOH . E 5 HOH AAA 3 1403 12 HOH HOH . E 5 HOH AAA 4 1404 47 HOH HOH . E 5 HOH AAA 5 1405 10 HOH HOH . E 5 HOH AAA 6 1406 57 HOH HOH . E 5 HOH AAA 7 1407 59 HOH HOH . E 5 HOH AAA 8 1408 30 HOH HOH . E 5 HOH AAA 9 1409 23 HOH HOH . E 5 HOH AAA 10 1410 58 HOH HOH . E 5 HOH AAA 11 1411 32 HOH HOH . E 5 HOH AAA 12 1412 19 HOH HOH . E 5 HOH AAA 13 1413 25 HOH HOH . E 5 HOH AAA 14 1414 50 HOH HOH . E 5 HOH AAA 15 1415 34 HOH HOH . E 5 HOH AAA 16 1416 3 HOH HOH . E 5 HOH AAA 17 1417 52 HOH HOH . E 5 HOH AAA 18 1418 46 HOH HOH . E 5 HOH AAA 19 1419 18 HOH HOH . E 5 HOH AAA 20 1420 7 HOH HOH . E 5 HOH AAA 21 1421 24 HOH HOH . E 5 HOH AAA 22 1422 29 HOH HOH . E 5 HOH AAA 23 1423 39 HOH HOH . E 5 HOH AAA 24 1424 48 HOH HOH . E 5 HOH AAA 25 1425 28 HOH HOH . E 5 HOH AAA 26 1426 17 HOH HOH . E 5 HOH AAA 27 1427 6 HOH HOH . E 5 HOH AAA 28 1428 53 HOH HOH . E 5 HOH AAA 29 1429 2 HOH HOH . E 5 HOH AAA 30 1430 33 HOH HOH . E 5 HOH AAA 31 1431 11 HOH HOH . E 5 HOH AAA 32 1432 26 HOH HOH . E 5 HOH AAA 33 1433 36 HOH HOH . E 5 HOH AAA 34 1434 13 HOH HOH . E 5 HOH AAA 35 1435 41 HOH HOH . E 5 HOH AAA 36 1436 42 HOH HOH . E 5 HOH AAA 37 1437 22 HOH HOH . E 5 HOH AAA 38 1438 49 HOH HOH . E 5 HOH AAA 39 1439 20 HOH HOH . E 5 HOH AAA 40 1440 16 HOH HOH . E 5 HOH AAA 41 1441 55 HOH HOH . E 5 HOH AAA 42 1442 14 HOH HOH . E 5 HOH AAA 43 1443 37 HOH HOH . E 5 HOH AAA 44 1444 44 HOH HOH . E 5 HOH AAA 45 1445 45 HOH HOH . E 5 HOH AAA 46 1446 38 HOH HOH . E 5 HOH AAA 47 1447 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IED . . . B 2 -41.266 1.893 -17.689 1 27.68 0 C1 IED 1301 AAA 1 HETATM 2 C C2 IED . . . B 2 -40.638 0.753 -17.209 1 27.63 0 C2 IED 1301 AAA 1 HETATM 3 C C3 IED . . . B 2 -40.819 0.453 -15.868 1 27.56 0 C3 IED 1301 AAA 1 HETATM 4 C C8 IED . . . B 2 -42.028 3.534 -18.847 1 27.44 0 C8 IED 1301 AAA 1 HETATM 5 C C9 IED . . . B 2 -41.291 2.443 -18.901 1 26.99 0 C9 IED 1301 AAA 1 HETATM 6 C C10 IED . . . B 2 -39.782 -0.116 -18.134 1 29.16 0 C10 IED 1301 AAA 1 HETATM 7 C C12 IED . . . B 2 -39.929 -2.672 -17.854 1 30.78 0 C12 IED 1301 AAA 1 HETATM 8 C C13 IED . . . B 2 -39.039 -3.59 -17.032 1 29.44 0 C13 IED 1301 AAA 1 HETATM 9 C C15 IED . . . B 2 -38.325 -1.543 -16.707 1 30.08 0 C15 IED 1301 AAA 1 HETATM 10 C C16 IED . . . B 2 -37.184 -3.27 -15.557 1 27.2 0 C16 IED 1301 AAA 1 HETATM 11 C C19 IED . . . B 2 -35.141 -4.119 -13.858 1 25.14 0 C19 IED 1301 AAA 1 HETATM 12 C C20 IED . . . B 2 -35.835 -2.957 -13.559 1 25.62 0 C20 IED 1301 AAA 1 HETATM 13 C C21 IED . . . B 2 -36.855 -2.534 -14.408 1 26.88 0 C21 IED 1301 AAA 1 HETATM 14 O O28 IED . . . B 2 -37.644 -0.589 -16.314 1 30.48 0 O28 IED 1301 AAA 1 HETATM 15 C C30 IED . . . B 2 -39.849 -3.049 -19.336 1 31.97 0 C30 IED 1301 AAA 1 HETATM 16 F F24 IED . . . B 2 -32.867 -2.262 -12.702 1 23.4 0 F24 IED 1301 AAA 1 HETATM 17 C C23 IED . . . B 2 -32.477 -3.492 -13.016 1 24.24 0 C23 IED 1301 AAA 1 HETATM 18 F F25 IED . . . B 2 -31.468 -3.878 -12.233 1 25.09 0 F25 IED 1301 AAA 1 HETATM 19 F F26 IED . . . B 2 -32.06 -3.492 -14.264 1 23.32 0 F26 IED 1301 AAA 1 HETATM 20 S S22 IED . . . B 2 -33.878 -4.655 -12.805 1 24.51 0 S22 IED 1301 AAA 1 HETATM 21 C C18 IED . . . B 2 -35.457 -4.858 -14.997 1 25 0 C18 IED 1301 AAA 1 HETATM 22 C C17 IED . . . B 2 -36.464 -4.428 -15.848 1 25.58 0 C17 IED 1301 AAA 1 HETATM 23 N N14 IED . . . B 2 -38.154 -2.837 -16.376 1 28.39 0 N14 IED 1301 AAA 1 HETATM 24 O O27 IED . . . B 2 -39.175 -4.812 -16.971 1 30.56 0 O27 IED 1301 AAA 1 HETATM 25 C C29 IED . . . B 2 -41.386 -2.615 -17.361 1 30.61 0 C29 IED 1301 AAA 1 HETATM 26 N N11 IED . . . B 2 -39.336 -1.387 -17.556 1 30.68 0 N11 IED 1301 AAA 1 HETATM 27 C C4 IED . . . B 2 -41.596 1.289 -15.054 1 27.78 0 C4 IED 1301 AAA 1 HETATM 28 N N5 IED . . . B 2 -42.191 2.37 -15.537 1 28.04 0 N5 IED 1301 AAA 1 HETATM 29 C C6 IED . . . B 2 -42.038 2.68 -16.846 1 28.48 0 C6 IED 1301 AAA 1 HETATM 30 N N7 IED . . . B 2 -42.485 3.679 -17.602 1 28.77 0 N7 IED 1301 AAA 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 30 #