data_8PYM # _model_server_result.job_id Xw9HPM6rATrjIvoXS2Igbg _model_server_result.datetime_utc '2024-11-22 21:50:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pym # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1303}' # _entry.id 8PYM # _exptl.entry_id 8PYM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 112.411 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CADMIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PYM _cell.length_a 69.35 _cell.length_b 69.35 _cell.length_c 142.85 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PYM _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 87 AAA CYS 1059 1_555 D CD CD . AAA CD 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.407 ? metalc ? metalc2 A NE2 HIS 88 AAA HIS 1060 1_555 C NI NI . AAA NI 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc3 A NE2 HIS 89 AAA HIS 1061 1_555 C NI NI . AAA NI 1302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc4 A OD1 ASP 149 AAA ASP 1121 1_555 D CD CD . AAA CD 1303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.409 ? metalc ? metalc5 A OE1 GLU 190 AAA GLU 1162 1_555 D CD CD . AAA CD 1303 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.658 ? metalc ? metalc6 A OE2 GLU 190 AAA GLU 1162 1_555 D CD CD . AAA CD 1303 3_454 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? metalc ? metalc7 C NI NI . AAA NI 1302 1_555 E O HOH . AAA HOH 1428 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? # _chem_comp.formula 'Cd 2' _chem_comp.formula_weight 112.411 _chem_comp.id CD _chem_comp.mon_nstd_flag . _chem_comp.name 'CADMIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8PYM _atom_sites.fract_transf_matrix[1][1] 0.01442 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01442 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IED AAA 1 1301 3000 IED INH . C 3 NI AAA 1 1302 1 NI NI . D 4 CD AAA 1 1303 1 CD CD . E 5 HOH AAA 1 1401 56 HOH HOH . E 5 HOH AAA 2 1402 21 HOH HOH . E 5 HOH AAA 3 1403 12 HOH HOH . E 5 HOH AAA 4 1404 47 HOH HOH . E 5 HOH AAA 5 1405 10 HOH HOH . E 5 HOH AAA 6 1406 57 HOH HOH . E 5 HOH AAA 7 1407 59 HOH HOH . E 5 HOH AAA 8 1408 30 HOH HOH . E 5 HOH AAA 9 1409 23 HOH HOH . E 5 HOH AAA 10 1410 58 HOH HOH . E 5 HOH AAA 11 1411 32 HOH HOH . E 5 HOH AAA 12 1412 19 HOH HOH . E 5 HOH AAA 13 1413 25 HOH HOH . E 5 HOH AAA 14 1414 50 HOH HOH . E 5 HOH AAA 15 1415 34 HOH HOH . E 5 HOH AAA 16 1416 3 HOH HOH . E 5 HOH AAA 17 1417 52 HOH HOH . E 5 HOH AAA 18 1418 46 HOH HOH . E 5 HOH AAA 19 1419 18 HOH HOH . E 5 HOH AAA 20 1420 7 HOH HOH . E 5 HOH AAA 21 1421 24 HOH HOH . E 5 HOH AAA 22 1422 29 HOH HOH . E 5 HOH AAA 23 1423 39 HOH HOH . E 5 HOH AAA 24 1424 48 HOH HOH . E 5 HOH AAA 25 1425 28 HOH HOH . E 5 HOH AAA 26 1426 17 HOH HOH . E 5 HOH AAA 27 1427 6 HOH HOH . E 5 HOH AAA 28 1428 53 HOH HOH . E 5 HOH AAA 29 1429 2 HOH HOH . E 5 HOH AAA 30 1430 33 HOH HOH . E 5 HOH AAA 31 1431 11 HOH HOH . E 5 HOH AAA 32 1432 26 HOH HOH . E 5 HOH AAA 33 1433 36 HOH HOH . E 5 HOH AAA 34 1434 13 HOH HOH . E 5 HOH AAA 35 1435 41 HOH HOH . E 5 HOH AAA 36 1436 42 HOH HOH . E 5 HOH AAA 37 1437 22 HOH HOH . E 5 HOH AAA 38 1438 49 HOH HOH . E 5 HOH AAA 39 1439 20 HOH HOH . E 5 HOH AAA 40 1440 16 HOH HOH . E 5 HOH AAA 41 1441 55 HOH HOH . E 5 HOH AAA 42 1442 14 HOH HOH . E 5 HOH AAA 43 1443 37 HOH HOH . E 5 HOH AAA 44 1444 44 HOH HOH . E 5 HOH AAA 45 1445 45 HOH HOH . E 5 HOH AAA 46 1446 38 HOH HOH . E 5 HOH AAA 47 1447 54 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CD _atom_site.label_atom_id CD _atom_site.label_comp_id CD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -30.381 _atom_site.Cartn_y 1.763 _atom_site.Cartn_z -2.248 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 29.31 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id CD _atom_site.auth_comp_id CD _atom_site.auth_seq_id 1303 _atom_site.auth_asym_id AAA _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 80 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 271 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #