data_8PYQ
#
_model_server_result.job_id            H-21EPpqrQm5VGEA6loUVg 
_model_server_result.datetime_utc      '2024-11-25 09:12:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pyq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":204}' 
#
_entry.id    8PYQ 
#
_exptl.entry_id    8PYQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              22.99 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SODIUM ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8PYQ 
_cell.length_a            79.2 
_cell.length_b            79.2 
_cell.length_c            38.2 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PYQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    'P 4nw 2abw' 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             E 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? 
disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
metalc ? metalc1 A O SER 60 A SER 60 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? 
metalc ? metalc2 A O CYS 64 A CYS 64 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.395 ? 
metalc ? metalc3 A OG SER 72 A SER 72 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.51 ? 
metalc ? metalc4 A O ARG 73 A ARG 73 1_555 E NA NA . A NA 204 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.507 ? 
metalc ? metalc5 A O ARG 73 A ARG 73 1_555 E NA NA . A NA 204 1_555 ? B ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc6 E NA NA . A NA 204 1_555 F O HOH . A HOH 335 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.563 ? 
metalc ? metalc7 E NA NA . A NA 204 1_555 F O HOH . A HOH 372 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.461 ? 
#
_chem_comp.formula           'Na 1' 
_chem_comp.formula_weight    22.99 
_chem_comp.id                NA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SODIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8PYQ 
_atom_sites.fract_transf_matrix[1][1]    0.012626 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012626 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.026178 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 201 202 CL CL . 
C 2 CL A 1 202 203 CL CL . 
D 2 CL A 1 203 204 CL CL . 
E 3 NA A 1 204 205 NA NA . 
F 4 HOH A 1 301 70 HOH HOH . 
F 4 HOH A 2 302 72 HOH HOH . 
F 4 HOH A 3 303 55 HOH HOH . 
F 4 HOH A 4 304 79 HOH HOH . 
F 4 HOH A 5 305 17 HOH HOH . 
F 4 HOH A 6 306 65 HOH HOH . 
F 4 HOH A 7 307 25 HOH HOH . 
F 4 HOH A 8 308 68 HOH HOH . 
F 4 HOH A 9 309 32 HOH HOH . 
F 4 HOH A 10 310 26 HOH HOH . 
F 4 HOH A 11 311 38 HOH HOH . 
F 4 HOH A 12 312 30 HOH HOH . 
F 4 HOH A 13 313 69 HOH HOH . 
F 4 HOH A 14 314 2 HOH HOH . 
F 4 HOH A 15 315 54 HOH HOH . 
F 4 HOH A 16 316 1 HOH HOH . 
F 4 HOH A 17 317 22 HOH HOH . 
F 4 HOH A 18 318 42 HOH HOH . 
F 4 HOH A 19 319 21 HOH HOH . 
F 4 HOH A 20 320 57 HOH HOH . 
F 4 HOH A 21 321 19 HOH HOH . 
F 4 HOH A 22 322 52 HOH HOH . 
F 4 HOH A 23 323 47 HOH HOH . 
F 4 HOH A 24 324 53 HOH HOH . 
F 4 HOH A 25 325 12 HOH HOH . 
F 4 HOH A 26 326 8 HOH HOH . 
F 4 HOH A 27 327 58 HOH HOH . 
F 4 HOH A 28 328 24 HOH HOH . 
F 4 HOH A 29 329 34 HOH HOH . 
F 4 HOH A 30 330 13 HOH HOH . 
F 4 HOH A 31 331 89 HOH HOH . 
F 4 HOH A 32 332 73 HOH HOH . 
F 4 HOH A 33 333 66 HOH HOH . 
F 4 HOH A 34 334 23 HOH HOH . 
F 4 HOH A 35 335 4 HOH HOH . 
F 4 HOH A 36 336 35 HOH HOH . 
F 4 HOH A 37 337 64 HOH HOH . 
F 4 HOH A 38 338 63 HOH HOH . 
F 4 HOH A 39 339 36 HOH HOH . 
F 4 HOH A 40 340 56 HOH HOH . 
F 4 HOH A 41 341 40 HOH HOH . 
F 4 HOH A 42 342 91 HOH HOH . 
F 4 HOH A 43 343 29 HOH HOH . 
F 4 HOH A 44 344 3 HOH HOH . 
F 4 HOH A 45 345 7 HOH HOH . 
F 4 HOH A 46 346 39 HOH HOH . 
F 4 HOH A 47 347 43 HOH HOH . 
F 4 HOH A 48 348 41 HOH HOH . 
F 4 HOH A 49 349 14 HOH HOH . 
F 4 HOH A 50 350 11 HOH HOH . 
F 4 HOH A 51 351 44 HOH HOH . 
F 4 HOH A 52 352 28 HOH HOH . 
F 4 HOH A 53 353 31 HOH HOH . 
F 4 HOH A 54 354 60 HOH HOH . 
F 4 HOH A 55 355 59 HOH HOH . 
F 4 HOH A 56 356 18 HOH HOH . 
F 4 HOH A 57 357 15 HOH HOH . 
F 4 HOH A 58 358 5 HOH HOH . 
F 4 HOH A 59 359 10 HOH HOH . 
F 4 HOH A 60 360 49 HOH HOH . 
F 4 HOH A 61 361 37 HOH HOH . 
F 4 HOH A 62 362 48 HOH HOH . 
F 4 HOH A 63 363 46 HOH HOH . 
F 4 HOH A 64 364 16 HOH HOH . 
F 4 HOH A 65 365 20 HOH HOH . 
F 4 HOH A 66 366 67 HOH HOH . 
F 4 HOH A 67 367 75 HOH HOH . 
F 4 HOH A 68 368 27 HOH HOH . 
F 4 HOH A 69 369 50 HOH HOH . 
F 4 HOH A 70 370 51 HOH HOH . 
F 4 HOH A 71 371 33 HOH HOH . 
F 4 HOH A 72 372 9 HOH HOH . 
F 4 HOH A 73 373 6 HOH HOH . 
F 4 HOH A 74 374 87 HOH HOH . 
F 4 HOH A 75 375 77 HOH HOH . 
F 4 HOH A 76 376 45 HOH HOH . 
F 4 HOH A 77 377 76 HOH HOH . 
F 4 HOH A 78 378 62 HOH HOH . 
F 4 HOH A 79 379 88 HOH HOH . 
F 4 HOH A 80 380 90 HOH HOH . 
F 4 HOH A 81 381 74 HOH HOH . 
F 4 HOH A 82 382 61 HOH HOH . 
F 4 HOH A 83 383 86 HOH HOH . 
F 4 HOH A 84 384 82 HOH HOH . 
F 4 HOH A 85 385 78 HOH HOH . 
F 4 HOH A 86 386 85 HOH HOH . 
F 4 HOH A 87 387 84 HOH HOH . 
F 4 HOH A 88 388 80 HOH HOH . 
F 4 HOH A 89 389 83 HOH HOH . 
F 4 HOH A 90 390 71 HOH HOH . 
F 4 HOH A 91 391 81 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           NA 
_atom_site.label_atom_id         NA 
_atom_site.label_comp_id         NA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               -14.545 
_atom_site.Cartn_y               7.838 
_atom_site.Cartn_z               3.209 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        23.4 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          NA 
_atom_site.auth_comp_id          NA 
_atom_site.auth_seq_id           204 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              82 
_model_server_stats.parse_time_ms           120 
_model_server_stats.create_model_time_ms    20 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           1 
#