data_8PYV # _model_server_result.job_id Brx7Xqa9DtJ_ZizqgxqJKg _model_server_result.datetime_utc '2024-11-18 10:49:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pyv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":203}' # _entry.id 8PYV # _exptl.entry_id 8PYV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 501.552 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description L-gamma-glutamyl-S-(2-biphenyl-4-yl-2-oxoethyl)-L-cysteinylglycine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8PYV _cell.length_a 77.2 _cell.length_b 77.2 _cell.length_c 122.06 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PYV _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall 'R 3' _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H27 N3 O7 S' _chem_comp.formula_weight 501.552 _chem_comp.id 48T _chem_comp.mon_nstd_flag . _chem_comp.name L-gamma-glutamyl-S-(2-biphenyl-4-yl-2-oxoethyl)-L-cysteinylglycine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 CA1 48T sing 1 n n CA1 C1 48T sing 2 n n CA1 CB1 48T sing 3 n n C1 O11 48T sing 4 n n C1 O12 48T doub 5 n n CB1 CG1 48T sing 6 n n CG1 CD1 48T sing 7 n n CD1 OE1 48T doub 8 n n CD1 N2 48T sing 9 n n N2 CA2 48T sing 10 n n CA2 C2 48T sing 11 n n CA2 CB2 48T sing 12 n n C2 O2 48T doub 13 n n C2 N3 48T sing 14 n n CB2 SG2 48T sing 15 n n SG2 C13 48T sing 16 n n CB4 CG4 48T doub 17 n y CB4 CH4 48T sing 18 n y CG4 CD4 48T sing 19 n y CD4 CE4 48T doub 20 n y CE4 CZ4 48T sing 21 n y CZ4 CH4 48T doub 22 n y CH4 CH5 48T sing 23 n n CH5 CZ5 48T doub 24 n y CH5 CB5 48T sing 25 n y CZ5 CE5 48T sing 26 n y CE5 CD5 48T doub 27 n y CD5 CG5 48T sing 28 n y CD5 C14 48T sing 29 n n CG5 CB5 48T doub 30 n y O5 C14 48T doub 31 n n N3 CA3 48T sing 32 n n CA3 C3 48T sing 33 n n C3 O31 48T doub 34 n n C3 O32 48T sing 35 n n C13 C14 48T sing 36 n n N1 H11N 48T sing 37 n n N1 H12N 48T sing 38 n n CA1 HA1 48T sing 39 n n CB1 HB11 48T sing 40 n n CB1 HB12 48T sing 41 n n O11 H11 48T sing 42 n n CG1 HG11 48T sing 43 n n CG1 HG12 48T sing 44 n n N2 H2 48T sing 45 n n CA2 HA2 48T sing 46 n n CB2 HB21 48T sing 47 n n CB2 HB22 48T sing 48 n n N3 H3 48T sing 49 n n C13 H131 48T sing 50 n n C13 H132 48T sing 51 n n CB4 HB4 48T sing 52 n n CG4 HG4 48T sing 53 n n CD4 HD4 48T sing 54 n n CE4 HE4 48T sing 55 n n CZ4 HZ4 48T sing 56 n n CZ5 HZ5 48T sing 57 n n CB5 HB5 48T sing 58 n n CE5 HE5 48T sing 59 n n CG5 HG5 48T sing 60 n n CA3 HA31 48T sing 61 n n CA3 HA32 48T sing 62 n n O32 H32 48T sing 63 n n # _atom_sites.entry_id 8PYV _atom_sites.fract_transf_matrix[1][1] 0.012953 _atom_sites.fract_transf_matrix[1][2] 0.007479 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014957 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008193 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PLM A 1 201 202 PLM PLM . C 2 PLM A 1 202 203 PLM PLM . D 3 48T A 1 203 1153 48T 48T . E 4 HOH A 1 301 3 HOH WAT . E 4 HOH A 2 302 54 HOH WAT . E 4 HOH A 3 303 33 HOH WAT . E 4 HOH A 4 304 13 HOH WAT . E 4 HOH A 5 305 29 HOH WAT . E 4 HOH A 6 306 47 HOH WAT . E 4 HOH A 7 307 36 HOH WAT . E 4 HOH A 8 308 32 HOH WAT . E 4 HOH A 9 309 49 HOH WAT . E 4 HOH A 10 310 40 HOH WAT . E 4 HOH A 11 311 23 HOH WAT . E 4 HOH A 12 312 12 HOH WAT . E 4 HOH A 13 313 4 HOH WAT . E 4 HOH A 14 314 21 HOH WAT . E 4 HOH A 15 315 31 HOH WAT . E 4 HOH A 16 316 18 HOH WAT . E 4 HOH A 17 317 6 HOH WAT . E 4 HOH A 18 318 37 HOH WAT . E 4 HOH A 19 319 59 HOH WAT . E 4 HOH A 20 320 15 HOH WAT . E 4 HOH A 21 321 5 HOH WAT . E 4 HOH A 22 322 11 HOH WAT . E 4 HOH A 23 323 17 HOH WAT . E 4 HOH A 24 324 52 HOH WAT . E 4 HOH A 25 325 20 HOH WAT . E 4 HOH A 26 326 35 HOH WAT . E 4 HOH A 27 327 34 HOH WAT . E 4 HOH A 28 328 57 HOH WAT . E 4 HOH A 29 329 39 HOH WAT . E 4 HOH A 30 330 60 HOH WAT . E 4 HOH A 31 331 24 HOH WAT . E 4 HOH A 32 332 42 HOH WAT . E 4 HOH A 33 333 48 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 48T . . . D 3 4.743 -8.381 41.622 1 29.16 ? N1 48T 203 A 1 HETATM 2 C CA1 48T . . . D 3 5.936 -9.201 41.533 1 29.42 ? CA1 48T 203 A 1 HETATM 3 C C1 48T . . . D 3 6.287 -9.39 40.055 1 29.59 ? C1 48T 203 A 1 HETATM 4 O O11 48T . . . D 3 7.35 -9.95 39.685 1 32.82 ? O11 48T 203 A 1 HETATM 5 C CB1 48T . . . D 3 5.69 -10.534 42.243 1 28.92 ? CB1 48T 203 A 1 HETATM 6 C CG1 48T . . . D 3 6.996 -11.311 42.423 1 29.91 ? CG1 48T 203 A 1 HETATM 7 C CD1 48T . . . D 3 8.114 -10.421 42.984 1 30.57 ? CD1 48T 203 A 1 HETATM 8 O OE1 48T . . . D 3 7.915 -9.644 43.871 1 31.27 ? OE1 48T 203 A 1 HETATM 9 O O12 48T . . . D 3 5.488 -8.959 39.193 1 30.45 ? O12 48T 203 A 1 HETATM 10 N N2 48T . . . D 3 9.437 -10.528 42.404 1 28.73 ? N2 48T 203 A 1 HETATM 11 C CA2 48T . . . D 3 10.527 -9.734 42.899 1 29.22 ? CA2 48T 203 A 1 HETATM 12 C C2 48T . . . D 3 10.714 -8.508 42.055 1 27.73 ? C2 48T 203 A 1 HETATM 13 O O2 48T . . . D 3 11.732 -7.936 42.135 1 28.21 ? O2 48T 203 A 1 HETATM 14 C CB2 48T . . . D 3 11.786 -10.562 42.69 1 29.5 ? CB2 48T 203 A 1 HETATM 15 S SG2 48T . . . D 3 11.782 -11.119 40.969 1 34.73 ? SG2 48T 203 A 1 HETATM 16 N N3 48T . . . D 3 9.686 -8.059 41.15 1 28.04 ? N3 48T 203 A 1 HETATM 17 C CA3 48T . . . D 3 9.949 -6.88 40.342 1 27.89 ? CA3 48T 203 A 1 HETATM 18 C C3 48T . . . D 3 8.692 -6.036 40.173 1 27.05 ? C3 48T 203 A 1 HETATM 19 C C13 48T . . . D 3 11.13 -12.812 40.92 1 33.5 ? C13 48T 203 A 1 HETATM 20 O O31 48T . . . D 3 7.705 -6.258 40.906 1 30.68 ? O31 48T 203 A 1 HETATM 21 O O32 48T . . . D 3 8.639 -5.126 39.32 1 26.53 ? O32 48T 203 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 21 #