data_8PYZ
#
_model_server_result.job_id            4gQMUgJpLdSlLPRIVDp5sw 
_model_server_result.datetime_utc      '2024-11-17 07:39:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pyz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"K","auth_seq_id":402}' 
#
_entry.id    8PYZ 
#
_exptl.entry_id    8PYZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              229.402 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'LAURYL DIMETHYLAMINE-N-OXIDE' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          112.039 
_cell.angle_gamma         90 
_cell.entry_id            8PYZ 
_cell.length_a            233.033 
_cell.length_b            74.366 
_cell.length_c            90.119 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PYZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 G N N 
? 3 J N N 
? 3 K N N 
#
_chem_comp.formula           'C14 H31 N O' 
_chem_comp.formula_weight    229.402 
_chem_comp.id                LDA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'LAURYL DIMETHYLAMINE-N-OXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 O1 LDA sing 214 n n 
N1 CM1 LDA sing 215 n n 
N1 CM2 LDA sing 216 n n 
N1 C1 LDA sing 217 n n 
CM1 HM11 LDA sing 218 n n 
CM1 HM12 LDA sing 219 n n 
CM1 HM13 LDA sing 220 n n 
CM2 HM21 LDA sing 221 n n 
CM2 HM22 LDA sing 222 n n 
CM2 HM23 LDA sing 223 n n 
C1 C2 LDA sing 224 n n 
C1 H11 LDA sing 225 n n 
C1 H12 LDA sing 226 n n 
C2 C3 LDA sing 227 n n 
C2 H21 LDA sing 228 n n 
C2 H22 LDA sing 229 n n 
C3 C4 LDA sing 230 n n 
C3 H31 LDA sing 231 n n 
C3 H32 LDA sing 232 n n 
C4 C5 LDA sing 233 n n 
C4 H41 LDA sing 234 n n 
C4 H42 LDA sing 235 n n 
C5 C6 LDA sing 236 n n 
C5 H51 LDA sing 237 n n 
C5 H52 LDA sing 238 n n 
C6 C7 LDA sing 239 n n 
C6 H61 LDA sing 240 n n 
C6 H62 LDA sing 241 n n 
C7 C8 LDA sing 242 n n 
C7 H71 LDA sing 243 n n 
C7 H72 LDA sing 244 n n 
C8 C9 LDA sing 245 n n 
C8 H81 LDA sing 246 n n 
C8 H82 LDA sing 247 n n 
C9 C10 LDA sing 248 n n 
C9 H91 LDA sing 249 n n 
C9 H92 LDA sing 250 n n 
C10 C11 LDA sing 251 n n 
C10 H101 LDA sing 252 n n 
C10 H102 LDA sing 253 n n 
C11 C12 LDA sing 254 n n 
C11 H111 LDA sing 255 n n 
C11 H112 LDA sing 256 n n 
C12 H121 LDA sing 257 n n 
C12 H122 LDA sing 258 n n 
C12 H123 LDA sing 259 n n 
#
_atom_sites.entry_id                     8PYZ 
_atom_sites.fract_transf_matrix[1][1]    0.004291 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001737 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013447 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011971 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
D 2 C8E E 1 501 501 C8E C8E . 
E 2 C8E E 1 502 601 C8E C8E . 
F 2 C8E E 1 503 701 C8E C8E . 
G 3 LDA E 1 504 401 LDA LDA . 
H 2 C8E F 1 501 501 C8E C8E . 
I 2 C8E F 1 502 601 C8E C8E . 
J 3 LDA C 1 401 401 LDA LDA . 
K 3 LDA C 1 402 401 LDA LDA . 
L 2 C8E C 1 403 501 C8E C8E . 
M 4 HOH E 1 601 118 HOH HOH . 
M 4 HOH E 2 602 35 HOH HOH . 
M 4 HOH E 3 603 37 HOH HOH . 
M 4 HOH E 4 604 109 HOH HOH . 
M 4 HOH E 5 605 5 HOH HOH . 
M 4 HOH E 6 606 12 HOH HOH . 
M 4 HOH E 7 607 1 HOH HOH . 
M 4 HOH E 8 608 73 HOH HOH . 
M 4 HOH E 9 609 117 HOH HOH . 
M 4 HOH E 10 610 23 HOH HOH . 
M 4 HOH E 11 611 8 HOH HOH . 
M 4 HOH E 12 612 40 HOH HOH . 
M 4 HOH E 13 613 111 HOH HOH . 
M 4 HOH E 14 614 29 HOH HOH . 
M 4 HOH E 15 615 137 HOH HOH . 
M 4 HOH E 16 616 43 HOH HOH . 
M 4 HOH E 17 617 3 HOH HOH . 
M 4 HOH E 18 618 106 HOH HOH . 
M 4 HOH E 19 619 64 HOH HOH . 
M 4 HOH E 20 620 75 HOH HOH . 
M 4 HOH E 21 621 15 HOH HOH . 
M 4 HOH E 22 622 136 HOH HOH . 
M 4 HOH E 23 623 70 HOH HOH . 
M 4 HOH E 24 624 140 HOH HOH . 
M 4 HOH E 25 625 77 HOH HOH . 
M 4 HOH E 26 626 14 HOH HOH . 
N 4 HOH F 1 601 132 HOH HOH . 
N 4 HOH F 2 602 9 HOH HOH . 
N 4 HOH F 3 603 36 HOH HOH . 
N 4 HOH F 4 604 81 HOH HOH . 
N 4 HOH F 5 605 49 HOH HOH . 
N 4 HOH F 6 606 7 HOH HOH . 
N 4 HOH F 7 607 135 HOH HOH . 
N 4 HOH F 8 608 138 HOH HOH . 
N 4 HOH F 9 609 16 HOH HOH . 
N 4 HOH F 10 610 134 HOH HOH . 
N 4 HOH F 11 611 22 HOH HOH . 
N 4 HOH F 12 612 130 HOH HOH . 
N 4 HOH F 13 613 6 HOH HOH . 
N 4 HOH F 14 614 17 HOH HOH . 
N 4 HOH F 15 615 74 HOH HOH . 
N 4 HOH F 16 616 131 HOH HOH . 
N 4 HOH F 17 617 24 HOH HOH . 
N 4 HOH F 18 618 51 HOH HOH . 
N 4 HOH F 19 619 102 HOH HOH . 
N 4 HOH F 20 620 95 HOH HOH . 
N 4 HOH F 21 621 133 HOH HOH . 
N 4 HOH F 22 622 86 HOH HOH . 
N 4 HOH F 23 623 31 HOH HOH . 
O 4 HOH C 1 501 129 HOH HOH . 
O 4 HOH C 2 502 2 HOH HOH . 
O 4 HOH C 3 503 121 HOH HOH . 
O 4 HOH C 4 504 107 HOH HOH . 
O 4 HOH C 5 505 94 HOH HOH . 
O 4 HOH C 6 506 39 HOH HOH . 
O 4 HOH C 7 507 32 HOH HOH . 
O 4 HOH C 8 508 10 HOH HOH . 
O 4 HOH C 9 509 123 HOH HOH . 
O 4 HOH C 10 510 18 HOH HOH . 
O 4 HOH C 11 511 41 HOH HOH . 
O 4 HOH C 12 512 13 HOH HOH . 
O 4 HOH C 13 513 97 HOH HOH . 
O 4 HOH C 14 514 120 HOH HOH . 
O 4 HOH C 15 515 126 HOH HOH . 
O 4 HOH C 16 516 21 HOH HOH . 
O 4 HOH C 17 517 4 HOH HOH . 
O 4 HOH C 18 518 47 HOH HOH . 
O 4 HOH C 19 519 56 HOH HOH . 
O 4 HOH C 20 520 34 HOH HOH . 
O 4 HOH C 21 521 30 HOH HOH . 
O 4 HOH C 22 522 122 HOH HOH . 
O 4 HOH C 23 523 98 HOH HOH . 
O 4 HOH C 24 524 124 HOH HOH . 
O 4 HOH C 25 525 78 HOH HOH . 
O 4 HOH C 26 526 84 HOH HOH . 
O 4 HOH C 27 527 96 HOH HOH . 
O 4 HOH C 28 528 128 HOH HOH . 
O 4 HOH C 29 529 28 HOH HOH . 
O 4 HOH C 30 530 11 HOH HOH . 
O 4 HOH C 31 531 125 HOH HOH . 
O 4 HOH C 32 532 48 HOH HOH . 
O 4 HOH C 33 533 85 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 LDA . . . K 3 19.596 47.934 62.278 1 63.99 ? N1 LDA 402 C 1 
HETATM 2 O O1 LDA . . . K 3 19.726 47.712 61.054 1 58.69 ? O1 LDA 402 C 1 
HETATM 3 C CM1 LDA . . . K 3 20.64 47.213 63.021 1 69.94 ? CM1 LDA 402 C 1 
HETATM 4 C CM2 LDA . . . K 3 18.279 47.459 62.716 1 64.45 ? CM2 LDA 402 C 1 
HETATM 5 C C1 LDA . . . K 3 19.738 49.352 62.542 1 66.28 ? C1 LDA 402 C 1 
HETATM 6 C C2 LDA . . . K 3 20.907 49.788 61.666 1 76.07 ? C2 LDA 402 C 1 
HETATM 7 C C3 LDA . . . K 3 21.171 51.285 61.779 1 81.57 ? C3 LDA 402 C 1 
HETATM 8 C C4 LDA . . . K 3 22.201 51.596 62.861 1 84.98 ? C4 LDA 402 C 1 
HETATM 9 C C5 LDA . . . K 3 23.511 50.842 62.663 1 86.36 ? C5 LDA 402 C 1 
HETATM 10 C C6 LDA . . . K 3 24.458 51.12 63.825 1 82.72 ? C6 LDA 402 C 1 
HETATM 11 C C7 LDA . . . K 3 25.216 49.864 64.236 1 79.38 ? C7 LDA 402 C 1 
#
_model_server_stats.io_time_ms              24 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           225 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           11 
#