data_8PYZ # _model_server_result.job_id o4FyCm1ByXu7w3yuoTnpQg _model_server_result.datetime_utc '2024-11-17 07:52:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pyz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":501}' # _entry.id 8PYZ # _exptl.entry_id 8PYZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 306.438 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.039 _cell.angle_gamma 90 _cell.entry_id 8PYZ _cell.length_a 233.033 _cell.length_b 74.366 _cell.length_c 90.119 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PYZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 L N N # _chem_comp.formula 'C16 H34 O5' _chem_comp.formula_weight 306.438 _chem_comp.id C8E _chem_comp.mon_nstd_flag . _chem_comp.name (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 C8E sing 70 n n C1 H11 C8E sing 71 n n C1 H12 C8E sing 72 n n C1 H13 C8E sing 73 n n C2 C3 C8E sing 74 n n C2 H21 C8E sing 75 n n C2 H22 C8E sing 76 n n C3 C4 C8E sing 77 n n C3 H31 C8E sing 78 n n C3 H32 C8E sing 79 n n C4 C5 C8E sing 80 n n C4 H41 C8E sing 81 n n C4 H42 C8E sing 82 n n C5 C6 C8E sing 83 n n C5 H51 C8E sing 84 n n C5 H52 C8E sing 85 n n C6 C7 C8E sing 86 n n C6 H61 C8E sing 87 n n C6 H62 C8E sing 88 n n C7 C8 C8E sing 89 n n C7 H71 C8E sing 90 n n C7 H72 C8E sing 91 n n C8 O9 C8E sing 92 n n C8 H81 C8E sing 93 n n C8 H82 C8E sing 94 n n O9 C10 C8E sing 95 n n C10 C11 C8E sing 96 n n C10 H101 C8E sing 97 n n C10 H102 C8E sing 98 n n C11 O12 C8E sing 99 n n C11 H111 C8E sing 100 n n C11 H112 C8E sing 101 n n O12 C13 C8E sing 102 n n C13 C14 C8E sing 103 n n C13 H131 C8E sing 104 n n C13 H132 C8E sing 105 n n C14 O15 C8E sing 106 n n C14 H141 C8E sing 107 n n C14 H142 C8E sing 108 n n O15 C16 C8E sing 109 n n C16 C17 C8E sing 110 n n C16 H161 C8E sing 111 n n C16 H162 C8E sing 112 n n C17 O18 C8E sing 113 n n C17 H171 C8E sing 114 n n C17 H172 C8E sing 115 n n O18 C19 C8E sing 116 n n C19 C20 C8E sing 117 n n C19 H191 C8E sing 118 n n C19 H192 C8E sing 119 n n C20 O21 C8E sing 120 n n C20 H201 C8E sing 121 n n C20 H202 C8E sing 122 n n O21 HO2 C8E sing 123 n n # _atom_sites.entry_id 8PYZ _atom_sites.fract_transf_matrix[1][1] 0.004291 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001737 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013447 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011971 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 C8E E 1 501 501 C8E C8E . E 2 C8E E 1 502 601 C8E C8E . F 2 C8E E 1 503 701 C8E C8E . G 3 LDA E 1 504 401 LDA LDA . H 2 C8E F 1 501 501 C8E C8E . I 2 C8E F 1 502 601 C8E C8E . J 3 LDA C 1 401 401 LDA LDA . K 3 LDA C 1 402 401 LDA LDA . L 2 C8E C 1 403 501 C8E C8E . M 4 HOH E 1 601 118 HOH HOH . M 4 HOH E 2 602 35 HOH HOH . M 4 HOH E 3 603 37 HOH HOH . M 4 HOH E 4 604 109 HOH HOH . M 4 HOH E 5 605 5 HOH HOH . M 4 HOH E 6 606 12 HOH HOH . M 4 HOH E 7 607 1 HOH HOH . M 4 HOH E 8 608 73 HOH HOH . M 4 HOH E 9 609 117 HOH HOH . M 4 HOH E 10 610 23 HOH HOH . M 4 HOH E 11 611 8 HOH HOH . M 4 HOH E 12 612 40 HOH HOH . M 4 HOH E 13 613 111 HOH HOH . M 4 HOH E 14 614 29 HOH HOH . M 4 HOH E 15 615 137 HOH HOH . M 4 HOH E 16 616 43 HOH HOH . M 4 HOH E 17 617 3 HOH HOH . M 4 HOH E 18 618 106 HOH HOH . M 4 HOH E 19 619 64 HOH HOH . M 4 HOH E 20 620 75 HOH HOH . M 4 HOH E 21 621 15 HOH HOH . M 4 HOH E 22 622 136 HOH HOH . M 4 HOH E 23 623 70 HOH HOH . M 4 HOH E 24 624 140 HOH HOH . M 4 HOH E 25 625 77 HOH HOH . M 4 HOH E 26 626 14 HOH HOH . N 4 HOH F 1 601 132 HOH HOH . N 4 HOH F 2 602 9 HOH HOH . N 4 HOH F 3 603 36 HOH HOH . N 4 HOH F 4 604 81 HOH HOH . N 4 HOH F 5 605 49 HOH HOH . N 4 HOH F 6 606 7 HOH HOH . N 4 HOH F 7 607 135 HOH HOH . N 4 HOH F 8 608 138 HOH HOH . N 4 HOH F 9 609 16 HOH HOH . N 4 HOH F 10 610 134 HOH HOH . N 4 HOH F 11 611 22 HOH HOH . N 4 HOH F 12 612 130 HOH HOH . N 4 HOH F 13 613 6 HOH HOH . N 4 HOH F 14 614 17 HOH HOH . N 4 HOH F 15 615 74 HOH HOH . N 4 HOH F 16 616 131 HOH HOH . N 4 HOH F 17 617 24 HOH HOH . N 4 HOH F 18 618 51 HOH HOH . N 4 HOH F 19 619 102 HOH HOH . N 4 HOH F 20 620 95 HOH HOH . N 4 HOH F 21 621 133 HOH HOH . N 4 HOH F 22 622 86 HOH HOH . N 4 HOH F 23 623 31 HOH HOH . O 4 HOH C 1 501 129 HOH HOH . O 4 HOH C 2 502 2 HOH HOH . O 4 HOH C 3 503 121 HOH HOH . O 4 HOH C 4 504 107 HOH HOH . O 4 HOH C 5 505 94 HOH HOH . O 4 HOH C 6 506 39 HOH HOH . O 4 HOH C 7 507 32 HOH HOH . O 4 HOH C 8 508 10 HOH HOH . O 4 HOH C 9 509 123 HOH HOH . O 4 HOH C 10 510 18 HOH HOH . O 4 HOH C 11 511 41 HOH HOH . O 4 HOH C 12 512 13 HOH HOH . O 4 HOH C 13 513 97 HOH HOH . O 4 HOH C 14 514 120 HOH HOH . O 4 HOH C 15 515 126 HOH HOH . O 4 HOH C 16 516 21 HOH HOH . O 4 HOH C 17 517 4 HOH HOH . O 4 HOH C 18 518 47 HOH HOH . O 4 HOH C 19 519 56 HOH HOH . O 4 HOH C 20 520 34 HOH HOH . O 4 HOH C 21 521 30 HOH HOH . O 4 HOH C 22 522 122 HOH HOH . O 4 HOH C 23 523 98 HOH HOH . O 4 HOH C 24 524 124 HOH HOH . O 4 HOH C 25 525 78 HOH HOH . O 4 HOH C 26 526 84 HOH HOH . O 4 HOH C 27 527 96 HOH HOH . O 4 HOH C 28 528 128 HOH HOH . O 4 HOH C 29 529 28 HOH HOH . O 4 HOH C 30 530 11 HOH HOH . O 4 HOH C 31 531 125 HOH HOH . O 4 HOH C 32 532 48 HOH HOH . O 4 HOH C 33 533 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O12 C8E . . . H 2 -6.787 42.348 83.928 1 64.26 ? O12 C8E 501 F 1 HETATM 2 C C13 C8E . . . H 2 -5.678 42.915 83.268 1 66.94 ? C13 C8E 501 F 1 HETATM 3 C C14 C8E . . . H 2 -4.6 43.263 84.288 1 71.26 ? C14 C8E 501 F 1 HETATM 4 O O15 C8E . . . H 2 -4.175 44.592 84.08 1 74.77 ? O15 C8E 501 F 1 HETATM 5 C C16 C8E . . . H 2 -2.839 44.658 83.636 1 76.53 ? C16 C8E 501 F 1 HETATM 6 C C17 C8E . . . H 2 -1.867 44.719 84.811 1 77.08 ? C17 C8E 501 F 1 HETATM 7 O O18 C8E . . . H 2 -1.675 46.062 85.202 1 76.12 ? O18 C8E 501 F 1 HETATM 8 C C19 C8E . . . H 2 -1.335 46.169 86.565 1 76.91 ? C19 C8E 501 F 1 HETATM 9 C C20 C8E . . . H 2 0.14 46.541 86.657 1 78.7 ? C20 C8E 501 F 1 HETATM 10 O O21 C8E . . . H 2 0.894 45.394 86.982 1 79.07 ? O21 C8E 501 F 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 215 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 10 #