data_8PZ4
#
_model_server_result.job_id            654tAwzhmqG-N37CHfpK8w 
_model_server_result.datetime_utc      '2024-11-21 14:22:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pz4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1002}' 
#
_entry.id    8PZ4 
#
_exptl.entry_id    8PZ4 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              40.078 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CALCIUM ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          102.48 
_cell.angle_gamma         90 
_cell.entry_id            8PZ4 
_cell.length_a            57.35 
_cell.length_b            74.69 
_cell.length_c            115.9 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PZ4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OD1 ASP 44 A ASP 44 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.4 ? 
metalc ? metalc2 A OD2 ASP 44 A ASP 44 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? 
metalc ? metalc3 A OD1 ASP 46 A ASP 46 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? 
metalc ? metalc4 A OD2 ASP 46 A ASP 46 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? 
metalc ? metalc5 A O ALA 50 A ALA 50 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.121 ? 
metalc ? metalc6 A O GLY 52 A GLY 52 1_555 D CA CA . A CA 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc7 A O ALA 125 A ALA 125 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? 
metalc ? metalc8 A O THR 128 A THR 128 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? 
metalc ? metalc9 A O TYR 130 A TYR 130 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.481 ? 
metalc ? metalc10 A O GLU 133 A GLU 133 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.448 ? 
metalc ? metalc11 A OE1 GLU 133 A GLU 133 1_555 C CA CA . A CA 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.579 ? 
metalc ? metalc12 C CA CA . A CA 1001 1_555 W O HOH . A HOH 1250 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.377 ? 
#
_chem_comp.formula           'Ca 2' 
_chem_comp.formula_weight    40.078 
_chem_comp.id                CA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CALCIUM ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     8PZ4 
_atom_sites.fract_transf_matrix[1][1]    0.017437 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003859 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013389 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008837 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 A 1 1000 1000 SO4 SO4 . 
C 3 CA A 1 1001 1001 CA CA . 
D 3 CA A 1 1002 1002 CA CA . 
E 4 FLC A 1 1003 1003 FLC FLC . 
F 5 LDA A 1 1004 1004 LDA LDA . 
G 5 LDA A 1 1005 1005 LDA LDA . 
H 5 LDA A 1 1006 1006 LDA LDA . 
I 5 LDA A 1 1007 1007 LDA LDA . 
J 5 LDA A 1 1008 1008 LDA LDA . 
K 5 LDA A 1 1009 1009 LDA LDA . 
L 5 LDA A 1 1010 1010 LDA LDA . 
M 5 LDA A 1 1011 1011 LDA LDA . 
N 6 78M A 1 1012 1012 78M 78M . 
O 7 78N A 1 1013 1013 78N 78N . 
P 6 78M A 1 1014 1014 78M 78M . 
Q 7 78N A 1 1015 1015 78N 78N . 
R 6 78M A 1 1016 1016 78M 78M . 
S 8 PE5 A 1 1017 1017 PE5 PE5 . 
T 8 PE5 A 1 1018 1018 PE5 PE5 . 
U 7 78N A 1 1019 1019 78N 78N . 
V 7 78N A 1 1020 1020 78N 78N . 
W 9 HOH A 1 1101 142 HOH HOH . 
W 9 HOH A 2 1102 178 HOH HOH . 
W 9 HOH A 3 1103 183 HOH HOH . 
W 9 HOH A 4 1104 131 HOH HOH . 
W 9 HOH A 5 1105 220 HOH HOH . 
W 9 HOH A 6 1106 187 HOH HOH . 
W 9 HOH A 7 1107 222 HOH HOH . 
W 9 HOH A 8 1108 68 HOH HOH . 
W 9 HOH A 9 1109 6 HOH HOH . 
W 9 HOH A 10 1110 55 HOH HOH . 
W 9 HOH A 11 1111 57 HOH HOH . 
W 9 HOH A 12 1112 64 HOH HOH . 
W 9 HOH A 13 1113 87 HOH HOH . 
W 9 HOH A 14 1114 119 HOH HOH . 
W 9 HOH A 15 1115 60 HOH HOH . 
W 9 HOH A 16 1116 90 HOH HOH . 
W 9 HOH A 17 1117 209 HOH HOH . 
W 9 HOH A 18 1118 221 HOH HOH . 
W 9 HOH A 19 1119 58 HOH HOH . 
W 9 HOH A 20 1120 70 HOH HOH . 
W 9 HOH A 21 1121 123 HOH HOH . 
W 9 HOH A 22 1122 44 HOH HOH . 
W 9 HOH A 23 1123 36 HOH HOH . 
W 9 HOH A 24 1124 117 HOH HOH . 
W 9 HOH A 25 1125 80 HOH HOH . 
W 9 HOH A 26 1126 2 HOH HOH . 
W 9 HOH A 27 1127 185 HOH HOH . 
W 9 HOH A 28 1128 105 HOH HOH . 
W 9 HOH A 29 1129 53 HOH HOH . 
W 9 HOH A 30 1130 141 HOH HOH . 
W 9 HOH A 31 1131 67 HOH HOH . 
W 9 HOH A 32 1132 110 HOH HOH . 
W 9 HOH A 33 1133 34 HOH HOH . 
W 9 HOH A 34 1134 29 HOH HOH . 
W 9 HOH A 35 1135 140 HOH HOH . 
W 9 HOH A 36 1136 1 HOH HOH . 
W 9 HOH A 37 1137 5 HOH HOH . 
W 9 HOH A 38 1138 155 HOH HOH . 
W 9 HOH A 39 1139 215 HOH HOH . 
W 9 HOH A 40 1140 20 HOH HOH . 
W 9 HOH A 41 1141 27 HOH HOH . 
W 9 HOH A 42 1142 69 HOH HOH . 
W 9 HOH A 43 1143 154 HOH HOH . 
W 9 HOH A 44 1144 91 HOH HOH . 
W 9 HOH A 45 1145 104 HOH HOH . 
W 9 HOH A 46 1146 99 HOH HOH . 
W 9 HOH A 47 1147 132 HOH HOH . 
W 9 HOH A 48 1148 137 HOH HOH . 
W 9 HOH A 49 1149 134 HOH HOH . 
W 9 HOH A 50 1150 199 HOH HOH . 
W 9 HOH A 51 1151 32 HOH HOH . 
W 9 HOH A 52 1152 92 HOH HOH . 
W 9 HOH A 53 1153 72 HOH HOH . 
W 9 HOH A 54 1154 8 HOH HOH . 
W 9 HOH A 55 1155 85 HOH HOH . 
W 9 HOH A 56 1156 112 HOH HOH . 
W 9 HOH A 57 1157 84 HOH HOH . 
W 9 HOH A 58 1158 30 HOH HOH . 
W 9 HOH A 59 1159 45 HOH HOH . 
W 9 HOH A 60 1160 163 HOH HOH . 
W 9 HOH A 61 1161 78 HOH HOH . 
W 9 HOH A 62 1162 124 HOH HOH . 
W 9 HOH A 63 1163 143 HOH HOH . 
W 9 HOH A 64 1164 71 HOH HOH . 
W 9 HOH A 65 1165 31 HOH HOH . 
W 9 HOH A 66 1166 19 HOH HOH . 
W 9 HOH A 67 1167 63 HOH HOH . 
W 9 HOH A 68 1168 18 HOH HOH . 
W 9 HOH A 69 1169 4 HOH HOH . 
W 9 HOH A 70 1170 196 HOH HOH . 
W 9 HOH A 71 1171 49 HOH HOH . 
W 9 HOH A 72 1172 115 HOH HOH . 
W 9 HOH A 73 1173 127 HOH HOH . 
W 9 HOH A 74 1174 103 HOH HOH . 
W 9 HOH A 75 1175 38 HOH HOH . 
W 9 HOH A 76 1176 16 HOH HOH . 
W 9 HOH A 77 1177 135 HOH HOH . 
W 9 HOH A 78 1178 12 HOH HOH . 
W 9 HOH A 79 1179 97 HOH HOH . 
W 9 HOH A 80 1180 21 HOH HOH . 
W 9 HOH A 81 1181 52 HOH HOH . 
W 9 HOH A 82 1182 79 HOH HOH . 
W 9 HOH A 83 1183 11 HOH HOH . 
W 9 HOH A 84 1184 120 HOH HOH . 
W 9 HOH A 85 1185 165 HOH HOH . 
W 9 HOH A 86 1186 107 HOH HOH . 
W 9 HOH A 87 1187 50 HOH HOH . 
W 9 HOH A 88 1188 126 HOH HOH . 
W 9 HOH A 89 1189 150 HOH HOH . 
W 9 HOH A 90 1190 88 HOH HOH . 
W 9 HOH A 91 1191 113 HOH HOH . 
W 9 HOH A 92 1192 3 HOH HOH . 
W 9 HOH A 93 1193 61 HOH HOH . 
W 9 HOH A 94 1194 89 HOH HOH . 
W 9 HOH A 95 1195 9 HOH HOH . 
W 9 HOH A 96 1196 82 HOH HOH . 
W 9 HOH A 97 1197 164 HOH HOH . 
W 9 HOH A 98 1198 139 HOH HOH . 
W 9 HOH A 99 1199 42 HOH HOH . 
W 9 HOH A 100 1200 66 HOH HOH . 
W 9 HOH A 101 1201 192 HOH HOH . 
W 9 HOH A 102 1202 176 HOH HOH . 
W 9 HOH A 103 1203 33 HOH HOH . 
W 9 HOH A 104 1204 65 HOH HOH . 
W 9 HOH A 105 1205 191 HOH HOH . 
W 9 HOH A 106 1206 76 HOH HOH . 
W 9 HOH A 107 1207 14 HOH HOH . 
W 9 HOH A 108 1208 102 HOH HOH . 
W 9 HOH A 109 1209 62 HOH HOH . 
W 9 HOH A 110 1210 81 HOH HOH . 
W 9 HOH A 111 1211 7 HOH HOH . 
W 9 HOH A 112 1212 86 HOH HOH . 
W 9 HOH A 113 1213 177 HOH HOH . 
W 9 HOH A 114 1214 83 HOH HOH . 
W 9 HOH A 115 1215 24 HOH HOH . 
W 9 HOH A 116 1216 147 HOH HOH . 
W 9 HOH A 117 1217 148 HOH HOH . 
W 9 HOH A 118 1218 93 HOH HOH . 
W 9 HOH A 119 1219 54 HOH HOH . 
W 9 HOH A 120 1220 17 HOH HOH . 
W 9 HOH A 121 1221 15 HOH HOH . 
W 9 HOH A 122 1222 122 HOH HOH . 
W 9 HOH A 123 1223 96 HOH HOH . 
W 9 HOH A 124 1224 109 HOH HOH . 
W 9 HOH A 125 1225 100 HOH HOH . 
W 9 HOH A 126 1226 94 HOH HOH . 
W 9 HOH A 127 1227 37 HOH HOH . 
W 9 HOH A 128 1228 51 HOH HOH . 
W 9 HOH A 129 1229 138 HOH HOH . 
W 9 HOH A 130 1230 13 HOH HOH . 
W 9 HOH A 131 1231 28 HOH HOH . 
W 9 HOH A 132 1232 59 HOH HOH . 
W 9 HOH A 133 1233 95 HOH HOH . 
W 9 HOH A 134 1234 73 HOH HOH . 
W 9 HOH A 135 1235 167 HOH HOH . 
W 9 HOH A 136 1236 46 HOH HOH . 
W 9 HOH A 137 1237 151 HOH HOH . 
W 9 HOH A 138 1238 116 HOH HOH . 
W 9 HOH A 139 1239 22 HOH HOH . 
W 9 HOH A 140 1240 169 HOH HOH . 
W 9 HOH A 141 1241 160 HOH HOH . 
W 9 HOH A 142 1242 26 HOH HOH . 
W 9 HOH A 143 1243 43 HOH HOH . 
W 9 HOH A 144 1244 77 HOH HOH . 
W 9 HOH A 145 1245 74 HOH HOH . 
W 9 HOH A 146 1246 226 HOH HOH . 
W 9 HOH A 147 1247 23 HOH HOH . 
W 9 HOH A 148 1248 133 HOH HOH . 
W 9 HOH A 149 1249 130 HOH HOH . 
W 9 HOH A 150 1250 114 HOH HOH . 
W 9 HOH A 151 1251 180 HOH HOH . 
W 9 HOH A 152 1252 101 HOH HOH . 
W 9 HOH A 153 1253 219 HOH HOH . 
W 9 HOH A 154 1254 144 HOH HOH . 
W 9 HOH A 155 1255 35 HOH HOH . 
W 9 HOH A 156 1256 118 HOH HOH . 
W 9 HOH A 157 1257 145 HOH HOH . 
W 9 HOH A 158 1258 56 HOH HOH . 
W 9 HOH A 159 1259 39 HOH HOH . 
W 9 HOH A 160 1260 152 HOH HOH . 
W 9 HOH A 161 1261 159 HOH HOH . 
W 9 HOH A 162 1262 158 HOH HOH . 
W 9 HOH A 163 1263 48 HOH HOH . 
W 9 HOH A 164 1264 194 HOH HOH . 
W 9 HOH A 165 1265 40 HOH HOH . 
W 9 HOH A 166 1266 41 HOH HOH . 
W 9 HOH A 167 1267 121 HOH HOH . 
W 9 HOH A 168 1268 47 HOH HOH . 
W 9 HOH A 169 1269 212 HOH HOH . 
W 9 HOH A 170 1270 98 HOH HOH . 
W 9 HOH A 171 1271 128 HOH HOH . 
W 9 HOH A 172 1272 157 HOH HOH . 
W 9 HOH A 173 1273 75 HOH HOH . 
W 9 HOH A 174 1274 129 HOH HOH . 
W 9 HOH A 175 1275 162 HOH HOH . 
W 9 HOH A 176 1276 10 HOH HOH . 
W 9 HOH A 177 1277 25 HOH HOH . 
W 9 HOH A 178 1278 125 HOH HOH . 
W 9 HOH A 179 1279 174 HOH HOH . 
W 9 HOH A 180 1280 182 HOH HOH . 
W 9 HOH A 181 1281 149 HOH HOH . 
W 9 HOH A 182 1282 136 HOH HOH . 
W 9 HOH A 183 1283 218 HOH HOH . 
W 9 HOH A 184 1284 156 HOH HOH . 
W 9 HOH A 185 1285 188 HOH HOH . 
W 9 HOH A 186 1286 179 HOH HOH . 
W 9 HOH A 187 1287 171 HOH HOH . 
W 9 HOH A 188 1288 181 HOH HOH . 
W 9 HOH A 189 1289 108 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           CA 
_atom_site.label_atom_id         CA 
_atom_site.label_comp_id         CA 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         D 
_atom_site.label_entity_id       3 
_atom_site.Cartn_x               2.705 
_atom_site.Cartn_y               20.833 
_atom_site.Cartn_z               11.686 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        75.97 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          CA 
_atom_site.auth_comp_id          CA 
_atom_site.auth_seq_id           1002 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           1 
#