data_8PZ5 # _model_server_result.job_id coyp63JaKHHPF7eetqsmFg _model_server_result.datetime_utc '2024-11-13 08:34:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pz5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":901}' # _entry.id 8PZ5 # _exptl.entry_id 8PZ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PZ5 _cell.length_a 111.39 _cell.length_b 111.39 _cell.length_c 217.52 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PZ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 8PZ5 _atom_sites.fract_transf_matrix[1][1] 0.008977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 901 901 FMN FMN . D 2 FMN B 1 901 901 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . C 2 109.001 28.126 20.787 1 149.24 ? N1 FMN 901 A 1 HETATM 2 C C2 FMN . . . C 2 108.567 27.753 22.044 1 153.93 ? C2 FMN 901 A 1 HETATM 3 O O2 FMN . . . C 2 109.381 27.614 22.957 1 166.39 ? O2 FMN 901 A 1 HETATM 4 N N3 FMN . . . C 2 107.225 27.537 22.279 1 144.44 ? N3 FMN 901 A 1 HETATM 5 C C4 FMN . . . C 2 106.308 27.692 21.259 1 143.41 ? C4 FMN 901 A 1 HETATM 6 O O4 FMN . . . C 2 105.112 27.498 21.471 1 146.2 ? O4 FMN 901 A 1 HETATM 7 C C4A FMN . . . C 2 106.74 28.067 19.992 1 139.25 ? C4A FMN 901 A 1 HETATM 8 N N5 FMN . . . C 2 105.833 28.224 18.964 1 133.18 ? N5 FMN 901 A 1 HETATM 9 C C5A FMN . . . C 2 106.262 28.598 17.707 1 135.16 ? C5A FMN 901 A 1 HETATM 10 C C6 FMN . . . C 2 105.347 28.757 16.672 1 131.36 ? C6 FMN 901 A 1 HETATM 11 C C7 FMN . . . C 2 105.785 29.133 15.406 1 125.78 ? C7 FMN 901 A 1 HETATM 12 C C7M FMN . . . C 2 104.801 29.307 14.287 1 121.73 ? C7M FMN 901 A 1 HETATM 13 C C8 FMN . . . C 2 107.139 29.349 15.177 1 123.51 ? C8 FMN 901 A 1 HETATM 14 C C8M FMN . . . C 2 107.617 29.755 13.814 1 119.71 ? C8M FMN 901 A 1 HETATM 15 C C9 FMN . . . C 2 108.051 29.191 16.212 1 133.25 ? C9 FMN 901 A 1 HETATM 16 C C9A FMN . . . C 2 107.615 28.814 17.477 1 137.68 ? C9A FMN 901 A 1 HETATM 17 N N10 FMN . . . C 2 108.523 28.653 18.504 1 140.95 ? N10 FMN 901 A 1 HETATM 18 C C10 FMN . . . C 2 108.091 28.285 19.761 1 143.19 ? C10 FMN 901 A 1 HETATM 19 C C1' FMN . . . C 2 109.983 28.889 18.259 1 141.31 ? C1' FMN 901 A 1 HETATM 20 C C2' FMN . . . C 2 110.664 27.586 17.856 1 142.02 ? C2' FMN 901 A 1 HETATM 21 O O2' FMN . . . C 2 110.624 26.678 18.934 1 140.73 ? O2' FMN 901 A 1 HETATM 22 C C3' FMN . . . C 2 112.103 27.881 17.46 1 146.31 ? C3' FMN 901 A 1 HETATM 23 O O3' FMN . . . C 2 112.124 28.367 16.136 1 143.93 ? O3' FMN 901 A 1 HETATM 24 C C4' FMN . . . C 2 113.005 26.656 17.55 1 141.85 ? C4' FMN 901 A 1 HETATM 25 O O4' FMN . . . C 2 112.654 25.866 18.665 1 143.46 ? O4' FMN 901 A 1 HETATM 26 C C5' FMN . . . C 2 114.446 27.124 17.687 1 134.33 ? C5' FMN 901 A 1 HETATM 27 O O5' FMN . . . C 2 114.8 27.881 16.552 1 135.05 ? O5' FMN 901 A 1 HETATM 28 P P FMN . . . C 2 115.736 29.182 16.698 1 143.97 ? P FMN 901 A 1 HETATM 29 O O1P FMN . . . C 2 116.298 29.208 18.099 1 147.3 ? O1P FMN 901 A 1 HETATM 30 O O2P FMN . . . C 2 116.875 29.087 15.711 1 153.38 ? O2P FMN 901 A 1 HETATM 31 O O3P FMN . . . C 2 114.935 30.434 16.432 1 142.94 ? O3P FMN 901 A 1 # _model_server_stats.io_time_ms 38 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 228 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 31 #