data_8PZ5 # _model_server_result.job_id uuiM8nF6IQ6QMyUH-4ODrQ _model_server_result.datetime_utc '2024-11-13 08:35:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8pz5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":901}' # _entry.id 8PZ5 # _exptl.entry_id 8PZ5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 456.344 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FLAVIN MONONUCLEOTIDE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8PZ5 _cell.length_a 111.39 _cell.length_b 111.39 _cell.length_c 217.52 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8PZ5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C17 H21 N4 O9 P' _chem_comp.formula_weight 456.344 _chem_comp.id FMN _chem_comp.mon_nstd_flag . _chem_comp.name 'FLAVIN MONONUCLEOTIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'RIBOFLAVIN MONOPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 FMN sing 83 n n N1 C10 FMN doub 84 n n C2 O2 FMN doub 85 n n C2 N3 FMN sing 86 n n N3 C4 FMN sing 87 n n N3 HN3 FMN sing 88 n n C4 O4 FMN doub 89 n n C4 C4A FMN sing 90 n n C4A N5 FMN doub 91 n n C4A C10 FMN sing 92 n n N5 C5A FMN sing 93 n n C5A C6 FMN doub 94 n y C5A C9A FMN sing 95 n y C6 C7 FMN sing 96 n y C6 H6 FMN sing 97 n n C7 C7M FMN sing 98 n n C7 C8 FMN doub 99 n y C7M HM71 FMN sing 100 n n C7M HM72 FMN sing 101 n n C7M HM73 FMN sing 102 n n C8 C8M FMN sing 103 n n C8 C9 FMN sing 104 n y C8M HM81 FMN sing 105 n n C8M HM82 FMN sing 106 n n C8M HM83 FMN sing 107 n n C9 C9A FMN doub 108 n y C9 H9 FMN sing 109 n n C9A N10 FMN sing 110 n n N10 C10 FMN sing 111 n n N10 C1' FMN sing 112 n n C1' C2' FMN sing 113 n n C1' "H1'1" FMN sing 114 n n C1' "H1'2" FMN sing 115 n n C2' O2' FMN sing 116 n n C2' C3' FMN sing 117 n n C2' H2' FMN sing 118 n n O2' HO2' FMN sing 119 n n C3' O3' FMN sing 120 n n C3' C4' FMN sing 121 n n C3' H3' FMN sing 122 n n O3' HO3' FMN sing 123 n n C4' O4' FMN sing 124 n n C4' C5' FMN sing 125 n n C4' H4' FMN sing 126 n n O4' HO4' FMN sing 127 n n C5' O5' FMN sing 128 n n C5' "H5'1" FMN sing 129 n n C5' "H5'2" FMN sing 130 n n O5' P FMN sing 131 n n P O1P FMN doub 132 n n P O2P FMN sing 133 n n P O3P FMN sing 134 n n O2P HOP2 FMN sing 135 n n O3P HOP3 FMN sing 136 n n # _atom_sites.entry_id 8PZ5 _atom_sites.fract_transf_matrix[1][1] 0.008977 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008977 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004597 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FMN A 1 901 901 FMN FMN . D 2 FMN B 1 901 901 FMN FMN . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 FMN . . . D 2 99.536 40.392 -4.011 1 143.57 ? N1 FMN 901 B 1 HETATM 2 C C2 FMN . . . D 2 98.975 40.105 -5.238 1 148.19 ? C2 FMN 901 B 1 HETATM 3 O O2 FMN . . . D 2 99.061 40.921 -6.156 1 153.46 ? O2 FMN 901 B 1 HETATM 4 N N3 FMN . . . D 2 98.321 38.906 -5.437 1 143.58 ? N3 FMN 901 B 1 HETATM 5 C C4 FMN . . . D 2 98.225 37.99 -4.408 1 139.21 ? C4 FMN 901 B 1 HETATM 6 O O4 FMN . . . D 2 97.642 36.923 -4.589 1 148.54 ? O4 FMN 901 B 1 HETATM 7 C C4A FMN . . . D 2 98.789 38.276 -3.171 1 127.37 ? C4A FMN 901 B 1 HETATM 8 N N5 FMN . . . D 2 98.701 37.369 -2.135 1 118.08 ? N5 FMN 901 B 1 HETATM 9 C C5A FMN . . . D 2 99.264 37.661 -0.908 1 112.29 ? C5A FMN 901 B 1 HETATM 10 C C6 FMN . . . D 2 99.176 36.748 0.138 1 111.15 ? C6 FMN 901 B 1 HETATM 11 C C7 FMN . . . D 2 99.744 37.043 1.373 1 108.24 ? C7 FMN 901 B 1 HETATM 12 C C7M FMN . . . D 2 99.649 36.058 2.499 1 92.91 ? C7M FMN 901 B 1 HETATM 13 C C8 FMN . . . D 2 100.401 38.253 1.563 1 111.12 ? C8 FMN 901 B 1 HETATM 14 C C8M FMN . . . D 2 101.017 38.582 2.89 1 112.01 ? C8M FMN 901 B 1 HETATM 15 C C9 FMN . . . D 2 100.488 39.163 0.517 1 113.55 ? C9 FMN 901 B 1 HETATM 16 C C9A FMN . . . D 2 99.92 38.868 -0.717 1 115.45 ? C9A FMN 901 B 1 HETATM 17 N N10 FMN . . . D 2 100.003 39.773 -1.753 1 123.62 ? N10 FMN 901 B 1 HETATM 18 C C10 FMN . . . D 2 99.446 39.481 -2.979 1 131.89 ? C10 FMN 901 B 1 HETATM 19 C C1' FMN . . . D 2 100.713 41.077 -1.555 1 119.02 ? C1' FMN 901 B 1 HETATM 20 C C2' FMN . . . D 2 99.736 42.145 -1.077 1 108.07 ? C2' FMN 901 B 1 HETATM 21 O O2' FMN . . . D 2 98.766 42.388 -2.071 1 98.31 ? O2' FMN 901 B 1 HETATM 22 C C3' FMN . . . D 2 100.508 43.419 -0.763 1 110.55 ? C3' FMN 901 B 1 HETATM 23 O O3' FMN . . . D 2 101.048 43.323 0.537 1 100.91 ? O3' FMN 901 B 1 HETATM 24 C C4' FMN . . . D 2 99.645 44.671 -0.845 1 105.48 ? C4' FMN 901 B 1 HETATM 25 O O4' FMN . . . D 2 98.747 44.583 -1.928 1 100.54 ? O4' FMN 901 B 1 HETATM 26 C C5' FMN . . . D 2 100.568 45.865 -1.03 1 101.42 ? C5' FMN 901 B 1 HETATM 27 O O5' FMN . . . D 2 101.487 45.899 0.039 1 105.55 ? O5' FMN 901 B 1 HETATM 28 P P FMN . . . D 2 103.011 46.358 -0.202 1 115.43 ? P FMN 901 B 1 HETATM 29 O O1P FMN . . . D 2 103.179 46.693 -1.664 1 108.65 ? O1P FMN 901 B 1 HETATM 30 O O2P FMN . . . D 2 103.281 47.597 0.622 1 123.97 ? O2P FMN 901 B 1 HETATM 31 O O3P FMN . . . D 2 103.973 45.262 0.202 1 131.99 ? O3P FMN 901 B 1 # _model_server_stats.io_time_ms 28 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #