data_8PZ6
#
_model_server_result.job_id            m5hc7FTo6Wfx7hY-yqUcWw 
_model_server_result.datetime_utc      '2024-11-22 01:41:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8pz6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":4000}' 
#
_entry.id    8PZ6 
#
_exptl.entry_id    8PZ6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              488.742 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (1~{R},3~{R})-5-[(2~{E})-2-[(4~{a}~{R},5~{S},9~{a}~{S})-4~{a}-methyl-5-[(2~{R})-6-methyl-6-oxidanyl-heptan-2-yl]-3,4,5,6,7,8,9,9~{a}-octahydro-2~{H}-benzo[7]annulen-1-ylidene]ethylidene]-2-(3-oxidanylpropylidene)cyclohexane-1,3-diol 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8PZ6 
_cell.length_a            66.07 
_cell.length_b            66.07 
_cell.length_c            261.06 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8PZ6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 12_564 x,x-y+1,-z-1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -33.035 57.218298 -43.51 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
_chem_comp.formula           'C31 H52 O4' 
_chem_comp.formula_weight    488.742 
_chem_comp.id                IG5 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (1~{R},3~{R})-5-[(2~{E})-2-[(4~{a}~{R},5~{S},9~{a}~{S})-4~{a}-methyl-5-[(2~{R})-6-methyl-6-oxidanyl-heptan-2-yl]-3,4,5,6,7,8,9,9~{a}-octahydro-2~{H}-benzo[7]annulen-1-ylidene]ethylidene]-2-(3-oxidanylpropylidene)cyclohexane-1,3-diol 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C17 C14 IG5 sing 152 n n 
C15 C14 IG5 sing 153 n n 
C14 C13 IG5 sing 154 n n 
C14 O16 IG5 sing 155 n n 
C13 C12 IG5 sing 156 n n 
C11 C12 IG5 sing 157 n n 
C11 C9 IG5 sing 158 n n 
C9 C10 IG5 sing 159 n n 
C9 C8 IG5 sing 160 n n 
C1 C2 IG5 sing 161 n n 
O35 C34 IG5 sing 162 n n 
C34 C33 IG5 sing 163 n n 
C33 C32 IG5 sing 164 n n 
C8 C2 IG5 sing 165 n n 
C8 C7 IG5 sing 166 n n 
C2 C21 IG5 sing 167 n n 
C2 C3 IG5 sing 168 n n 
C32 C28 IG5 doub 169 z n 
C21 C20 IG5 sing 170 n n 
C20 C19 IG5 sing 171 n n 
O30 C29 IG5 sing 172 n n 
C31 C24 IG5 sing 173 n n 
C31 C29 IG5 sing 174 n n 
C28 C29 IG5 sing 175 n n 
C28 C26 IG5 sing 176 n n 
C7 C6 IG5 sing 177 n n 
C24 C25 IG5 sing 178 n n 
C24 C23 IG5 doub 179 e n 
C25 C26 IG5 sing 180 n n 
C3 C18 IG5 sing 181 n n 
C3 C4 IG5 sing 182 n n 
C22 C23 IG5 sing 183 n n 
C22 C18 IG5 doub 184 e n 
C26 O27 IG5 sing 185 n n 
C18 C19 IG5 sing 186 n n 
C5 C4 IG5 sing 187 n n 
C5 C6 IG5 sing 188 n n 
C4 H1 IG5 sing 189 n n 
C4 H2 IG5 sing 190 n n 
C5 H3 IG5 sing 191 n n 
C5 H4 IG5 sing 192 n n 
C6 H5 IG5 sing 193 n n 
C6 H6 IG5 sing 194 n n 
C7 H7 IG5 sing 195 n n 
C7 H8 IG5 sing 196 n n 
C8 H9 IG5 sing 197 n n 
C10 H10 IG5 sing 198 n n 
C10 H11 IG5 sing 199 n n 
C10 H12 IG5 sing 200 n n 
C13 H13 IG5 sing 201 n n 
C13 H14 IG5 sing 202 n n 
C15 H15 IG5 sing 203 n n 
C15 H16 IG5 sing 204 n n 
C15 H17 IG5 sing 205 n n 
C17 H18 IG5 sing 206 n n 
C17 H19 IG5 sing 207 n n 
C17 H20 IG5 sing 208 n n 
C20 H21 IG5 sing 209 n n 
C20 H22 IG5 sing 210 n n 
C21 H23 IG5 sing 211 n n 
C21 H24 IG5 sing 212 n n 
C22 H25 IG5 sing 213 n n 
C26 H26 IG5 sing 214 n n 
C1 H27 IG5 sing 215 n n 
C1 H28 IG5 sing 216 n n 
C1 H29 IG5 sing 217 n n 
C11 H30 IG5 sing 218 n n 
C11 H31 IG5 sing 219 n n 
C12 H32 IG5 sing 220 n n 
C12 H33 IG5 sing 221 n n 
C19 H34 IG5 sing 222 n n 
C19 H35 IG5 sing 223 n n 
C23 H36 IG5 sing 224 n n 
C25 H37 IG5 sing 225 n n 
C25 H38 IG5 sing 226 n n 
C29 H39 IG5 sing 227 n n 
C3 H40 IG5 sing 228 n n 
C31 H41 IG5 sing 229 n n 
C31 H42 IG5 sing 230 n n 
C32 H43 IG5 sing 231 n n 
C33 H44 IG5 sing 232 n n 
C33 H45 IG5 sing 233 n n 
C34 H46 IG5 sing 234 n n 
C34 H47 IG5 sing 235 n n 
C9 H48 IG5 sing 236 n n 
O16 H49 IG5 sing 237 n n 
O27 H50 IG5 sing 238 n n 
O30 H51 IG5 sing 239 n n 
O35 H52 IG5 sing 240 n n 
#
_atom_sites.entry_id                     8PZ6 
_atom_sites.fract_transf_matrix[1][1]    0.015135 
_atom_sites.fract_transf_matrix[1][2]    0.008738 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017477 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003831 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 IG5 A 1 4000 4000 IG5 LIG . 
D 4 HOH A 1 4101 9 HOH HOH . 
D 4 HOH A 2 4102 5 HOH HOH . 
D 4 HOH A 3 4103 11 HOH HOH . 
D 4 HOH A 4 4104 3 HOH HOH . 
D 4 HOH A 5 4105 18 HOH HOH . 
D 4 HOH A 6 4106 2 HOH HOH . 
D 4 HOH A 7 4107 7 HOH HOH . 
D 4 HOH A 8 4108 1 HOH HOH . 
D 4 HOH A 9 4109 10 HOH HOH . 
D 4 HOH A 10 4110 15 HOH HOH . 
D 4 HOH A 11 4111 12 HOH HOH . 
D 4 HOH A 12 4112 6 HOH HOH . 
D 4 HOH A 13 4113 17 HOH HOH . 
D 4 HOH A 14 4114 14 HOH HOH . 
D 4 HOH A 15 4115 4 HOH HOH . 
D 4 HOH A 16 4116 8 HOH HOH . 
D 4 HOH A 17 4117 13 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 IG5 . . . C 3 -30.248 19.208 -4.941 1 67.59 ? C4 IG5 4000 A 1 
HETATM 2 C C5 IG5 . . . C 3 -28.727 19.224 -5.034 1 69.29 ? C5 IG5 4000 A 1 
HETATM 3 C C6 IG5 . . . C 3 -28.032 17.994 -4.498 1 71.56 ? C6 IG5 4000 A 1 
HETATM 4 C C7 IG5 . . . C 3 -28.115 16.763 -5.393 1 75.35 ? C7 IG5 4000 A 1 
HETATM 5 C C8 IG5 . . . C 3 -28.921 16.956 -6.672 1 72.12 ? C8 IG5 4000 A 1 
HETATM 6 C C10 IG5 . . . C 3 -27.557 14.898 -7.32 1 74.27 ? C10 IG5 4000 A 1 
HETATM 7 C C13 IG5 . . . C 3 -26.159 17.773 -10.246 1 75.03 ? C13 IG5 4000 A 1 
HETATM 8 C C15 IG5 . . . C 3 -24.541 19.617 -10.785 1 73.65 ? C15 IG5 4000 A 1 
HETATM 9 C C17 IG5 . . . C 3 -23.865 17.232 -11.101 1 80.56 ? C17 IG5 4000 A 1 
HETATM 10 C C20 IG5 . . . C 3 -32.468 15.551 -6.084 1 75.19 ? C20 IG5 4000 A 1 
HETATM 11 C C21 IG5 . . . C 3 -30.96 15.631 -6.302 1 70.47 ? C21 IG5 4000 A 1 
HETATM 12 C C22 IG5 . . . C 3 -33.161 18.946 -5.184 1 64.38 ? C22 IG5 4000 A 1 
HETATM 13 C C24 IG5 . . . C 3 -35.292 20.071 -5.367 1 64.76 ? C24 IG5 4000 A 1 
HETATM 14 C C26 IG5 . . . C 3 -37.579 21.292 -5.116 1 71.1 ? C26 IG5 4000 A 1 
HETATM 15 C C28 IG5 . . . C 3 -36.875 22.511 -5.652 1 68.64 ? C28 IG5 4000 A 1 
HETATM 16 C C1 IG5 . . . C 3 -31.098 17.687 -7.698 1 71.97 ? C1 IG5 4000 A 1 
HETATM 17 C C11 IG5 . . . C 3 -28.078 16.657 -9.03 1 75.24 ? C11 IG5 4000 A 1 
HETATM 18 C C12 IG5 . . . C 3 -26.657 17.183 -8.936 1 78.47 ? C12 IG5 4000 A 1 
HETATM 19 C C14 IG5 . . . C 3 -24.695 18.196 -10.275 1 75.27 ? C14 IG5 4000 A 1 
HETATM 20 C C18 IG5 . . . C 3 -32.41 17.84 -5.083 1 68.91 ? C18 IG5 4000 A 1 
HETATM 21 C C19 IG5 . . . C 3 -32.936 16.442 -4.935 1 73.98 ? C19 IG5 4000 A 1 
HETATM 22 C C2 IG5 . . . C 3 -30.444 17.069 -6.452 1 71.21 ? C2 IG5 4000 A 1 
HETATM 23 C C23 IG5 . . . C 3 -34.56 18.996 -5.161 1 65.86 ? C23 IG5 4000 A 1 
HETATM 24 C C25 IG5 . . . C 3 -36.799 20.008 -5.349 1 67.08 ? C25 IG5 4000 A 1 
HETATM 25 C C29 IG5 . . . C 3 -35.429 22.629 -5.255 1 64.18 ? C29 IG5 4000 A 1 
HETATM 26 C C3 IG5 . . . C 3 -30.904 17.845 -5.188 1 69.02 ? C3 IG5 4000 A 1 
HETATM 27 C C31 IG5 . . . C 3 -34.641 21.399 -5.658 1 61.41 ? C31 IG5 4000 A 1 
HETATM 28 C C32 IG5 . . . C 3 -37.473 23.402 -6.434 1 70.08 ? C32 IG5 4000 A 1 
HETATM 29 C C33 IG5 . . . C 3 -38.886 23.376 -6.935 1 71.97 ? C33 IG5 4000 A 1 
HETATM 30 C C34 IG5 . . . C 3 -39.498 24.751 -6.97 1 75.2 ? C34 IG5 4000 A 1 
HETATM 31 C C9 IG5 . . . C 3 -28.578 15.935 -7.771 1 73.52 ? C9 IG5 4000 A 1 
HETATM 32 O O16 IG5 . . . C 3 -24.195 18.156 -8.927 1 79.89 ? O16 IG5 4000 A 1 
HETATM 33 O O27 IG5 . . . C 3 -37.878 21.43 -3.735 1 73.05 ? O27 IG5 4000 A 1 
HETATM 34 O O30 IG5 . . . C 3 -34.824 23.774 -5.833 1 64.46 ? O30 IG5 4000 A 1 
HETATM 35 O O35 IG5 . . . C 3 -38.513 25.766 -6.986 1 76.86 ? O35 IG5 4000 A 1 
#
_model_server_stats.io_time_ms              46 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           382 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           35 
#