data_8Q0Y # _model_server_result.job_id M0lF5qkKEYIKG_1Cf0d1Cg _model_server_result.datetime_utc '2024-10-12 23:27:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q0y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":408}' # _entry.id 8Q0Y # _exptl.entry_id 8Q0Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 78.133 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'DIMETHYL SULFOXIDE' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.2 _cell.angle_gamma 90 _cell.entry_id 8Q0Y _cell.length_a 44.855 _cell.length_b 72.626 _cell.length_c 52.432 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q0Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 E N N ? 2 F N N ? 2 I N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 255 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 290 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 290 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.023 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C2 H6 O S' _chem_comp.formula_weight 78.133 _chem_comp.id DMS _chem_comp.mon_nstd_flag . _chem_comp.name 'DIMETHYL SULFOXIDE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O DMS doub 89 n n S C1 DMS sing 90 n n S C2 DMS sing 91 n n C1 H11 DMS sing 92 n n C1 H12 DMS sing 93 n n C1 H13 DMS sing 94 n n C2 H21 DMS sing 95 n n C2 H22 DMS sing 96 n n C2 H23 DMS sing 97 n n # _atom_sites.entry_id 8Q0Y _atom_sites.fract_transf_matrix[1][1] 0.022294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.007764 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013769 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020196 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DMS A 1 401 401 DMS DMS . C 3 IJ9 A 1 402 402 IJ9 F04 . D 4 MPD A 1 403 403 MPD MPD . E 2 DMS A 1 404 404 DMS DMS . F 2 DMS A 1 405 405 DMS DMS . G 5 ACT A 1 406 406 ACT ACT . H 5 ACT A 1 407 407 ACT ACT . I 2 DMS A 1 408 430 DMS DMS . J 6 HOH A 1 501 216 HOH HOH . J 6 HOH A 2 502 206 HOH HOH . J 6 HOH A 3 503 286 HOH HOH . J 6 HOH A 4 504 229 HOH HOH . J 6 HOH A 5 505 146 HOH HOH . J 6 HOH A 6 506 296 HOH HOH . J 6 HOH A 7 507 69 HOH HOH . J 6 HOH A 8 508 241 HOH HOH . J 6 HOH A 9 509 228 HOH HOH . J 6 HOH A 10 510 60 HOH HOH . J 6 HOH A 11 511 38 HOH HOH . J 6 HOH A 12 512 227 HOH HOH . J 6 HOH A 13 513 188 HOH HOH . J 6 HOH A 14 514 173 HOH HOH . J 6 HOH A 15 515 213 HOH HOH . J 6 HOH A 16 516 209 HOH HOH . J 6 HOH A 17 517 116 HOH HOH . J 6 HOH A 18 518 136 HOH HOH . J 6 HOH A 19 519 238 HOH HOH . J 6 HOH A 20 520 193 HOH HOH . J 6 HOH A 21 521 120 HOH HOH . J 6 HOH A 22 522 275 HOH HOH . J 6 HOH A 23 523 61 HOH HOH . J 6 HOH A 24 524 122 HOH HOH . J 6 HOH A 25 525 140 HOH HOH . J 6 HOH A 26 526 114 HOH HOH . J 6 HOH A 27 527 157 HOH HOH . J 6 HOH A 28 528 139 HOH HOH . J 6 HOH A 29 529 55 HOH HOH . J 6 HOH A 30 530 158 HOH HOH . J 6 HOH A 31 531 253 HOH HOH . J 6 HOH A 32 532 32 HOH HOH . J 6 HOH A 33 533 22 HOH HOH . J 6 HOH A 34 534 242 HOH HOH . J 6 HOH A 35 535 23 HOH HOH . J 6 HOH A 36 536 303 HOH HOH . J 6 HOH A 37 537 117 HOH HOH . J 6 HOH A 38 538 131 HOH HOH . J 6 HOH A 39 539 186 HOH HOH . J 6 HOH A 40 540 306 HOH HOH . J 6 HOH A 41 541 169 HOH HOH . J 6 HOH A 42 542 230 HOH HOH . J 6 HOH A 43 543 160 HOH HOH . J 6 HOH A 44 544 105 HOH HOH . J 6 HOH A 45 545 163 HOH HOH . J 6 HOH A 46 546 135 HOH HOH . J 6 HOH A 47 547 125 HOH HOH . J 6 HOH A 48 548 130 HOH HOH . J 6 HOH A 49 549 304 HOH HOH . J 6 HOH A 50 550 102 HOH HOH . J 6 HOH A 51 551 123 HOH HOH . J 6 HOH A 52 552 272 HOH HOH . J 6 HOH A 53 553 172 HOH HOH . J 6 HOH A 54 554 68 HOH HOH . J 6 HOH A 55 555 251 HOH HOH . J 6 HOH A 56 556 147 HOH HOH . J 6 HOH A 57 557 183 HOH HOH . J 6 HOH A 58 558 42 HOH HOH . J 6 HOH A 59 559 66 HOH HOH . J 6 HOH A 60 560 246 HOH HOH . J 6 HOH A 61 561 118 HOH HOH . J 6 HOH A 62 562 40 HOH HOH . J 6 HOH A 63 563 111 HOH HOH . J 6 HOH A 64 564 82 HOH HOH . J 6 HOH A 65 565 128 HOH HOH . J 6 HOH A 66 566 174 HOH HOH . J 6 HOH A 67 567 240 HOH HOH . J 6 HOH A 68 568 200 HOH HOH . J 6 HOH A 69 569 34 HOH HOH . J 6 HOH A 70 570 165 HOH HOH . J 6 HOH A 71 571 124 HOH HOH . J 6 HOH A 72 572 133 HOH HOH . J 6 HOH A 73 573 110 HOH HOH . J 6 HOH A 74 574 104 HOH HOH . J 6 HOH A 75 575 212 HOH HOH . J 6 HOH A 76 576 207 HOH HOH . J 6 HOH A 77 577 191 HOH HOH . J 6 HOH A 78 578 234 HOH HOH . J 6 HOH A 79 579 189 HOH HOH . J 6 HOH A 80 580 155 HOH HOH . J 6 HOH A 81 581 187 HOH HOH . J 6 HOH A 82 582 284 HOH HOH . J 6 HOH A 83 583 223 HOH HOH . J 6 HOH A 84 584 298 HOH HOH . J 6 HOH A 85 585 132 HOH HOH . J 6 HOH A 86 586 2 HOH HOH . J 6 HOH A 87 587 159 HOH HOH . J 6 HOH A 88 588 239 HOH HOH . J 6 HOH A 89 589 202 HOH HOH . J 6 HOH A 90 590 261 HOH HOH . J 6 HOH A 91 591 25 HOH HOH . J 6 HOH A 92 592 245 HOH HOH . J 6 HOH A 93 593 141 HOH HOH . J 6 HOH A 94 594 134 HOH HOH . J 6 HOH A 95 595 112 HOH HOH . J 6 HOH A 96 596 218 HOH HOH . J 6 HOH A 97 597 276 HOH HOH . J 6 HOH A 98 598 295 HOH HOH . J 6 HOH A 99 599 51 HOH HOH . J 6 HOH A 100 600 177 HOH HOH . J 6 HOH A 101 601 9 HOH HOH . J 6 HOH A 102 602 184 HOH HOH . J 6 HOH A 103 603 294 HOH HOH . J 6 HOH A 104 604 233 HOH HOH . J 6 HOH A 105 605 266 HOH HOH . J 6 HOH A 106 606 108 HOH HOH . J 6 HOH A 107 607 182 HOH HOH . J 6 HOH A 108 608 250 HOH HOH . J 6 HOH A 109 609 121 HOH HOH . J 6 HOH A 110 610 204 HOH HOH . J 6 HOH A 111 611 210 HOH HOH . J 6 HOH A 112 612 203 HOH HOH . J 6 HOH A 113 613 149 HOH HOH . J 6 HOH A 114 614 224 HOH HOH . J 6 HOH A 115 615 142 HOH HOH . J 6 HOH A 116 616 181 HOH HOH . J 6 HOH A 117 617 138 HOH HOH . J 6 HOH A 118 618 109 HOH HOH . J 6 HOH A 119 619 194 HOH HOH . J 6 HOH A 120 620 14 HOH HOH . J 6 HOH A 121 621 308 HOH HOH . J 6 HOH A 122 622 237 HOH HOH . J 6 HOH A 123 623 287 HOH HOH . J 6 HOH A 124 624 57 HOH HOH . J 6 HOH A 125 625 162 HOH HOH . J 6 HOH A 126 626 148 HOH HOH . J 6 HOH A 127 627 150 HOH HOH . J 6 HOH A 128 628 180 HOH HOH . J 6 HOH A 129 629 144 HOH HOH . J 6 HOH A 130 630 171 HOH HOH . J 6 HOH A 131 631 285 HOH HOH . J 6 HOH A 132 632 3 HOH HOH . J 6 HOH A 133 633 278 HOH HOH . J 6 HOH A 134 634 24 HOH HOH . J 6 HOH A 135 635 185 HOH HOH . J 6 HOH A 136 636 176 HOH HOH . J 6 HOH A 137 637 156 HOH HOH . J 6 HOH A 138 638 27 HOH HOH . J 6 HOH A 139 639 279 HOH HOH . J 6 HOH A 140 640 231 HOH HOH . J 6 HOH A 141 641 30 HOH HOH . J 6 HOH A 142 642 267 HOH HOH . J 6 HOH A 143 643 153 HOH HOH . J 6 HOH A 144 644 119 HOH HOH . J 6 HOH A 145 645 41 HOH HOH . J 6 HOH A 146 646 164 HOH HOH . J 6 HOH A 147 647 103 HOH HOH . J 6 HOH A 148 648 43 HOH HOH . J 6 HOH A 149 649 4 HOH HOH . J 6 HOH A 150 650 1 HOH HOH . J 6 HOH A 151 651 197 HOH HOH . J 6 HOH A 152 652 154 HOH HOH . J 6 HOH A 153 653 196 HOH HOH . J 6 HOH A 154 654 255 HOH HOH . J 6 HOH A 155 655 268 HOH HOH . J 6 HOH A 156 656 166 HOH HOH . J 6 HOH A 157 657 143 HOH HOH . J 6 HOH A 158 658 151 HOH HOH . J 6 HOH A 159 659 221 HOH HOH . J 6 HOH A 160 660 219 HOH HOH . J 6 HOH A 161 661 252 HOH HOH . J 6 HOH A 162 662 222 HOH HOH . J 6 HOH A 163 663 107 HOH HOH . J 6 HOH A 164 664 305 HOH HOH . J 6 HOH A 165 665 190 HOH HOH . J 6 HOH A 166 666 220 HOH HOH . J 6 HOH A 167 667 137 HOH HOH . J 6 HOH A 168 668 179 HOH HOH . J 6 HOH A 169 669 273 HOH HOH . J 6 HOH A 170 670 36 HOH HOH . J 6 HOH A 171 671 258 HOH HOH . J 6 HOH A 172 672 201 HOH HOH . J 6 HOH A 173 673 64 HOH HOH . J 6 HOH A 174 674 8 HOH HOH . J 6 HOH A 175 675 243 HOH HOH . J 6 HOH A 176 676 56 HOH HOH . J 6 HOH A 177 677 289 HOH HOH . J 6 HOH A 178 678 81 HOH HOH . J 6 HOH A 179 679 145 HOH HOH . J 6 HOH A 180 680 76 HOH HOH . J 6 HOH A 181 681 18 HOH HOH . J 6 HOH A 182 682 53 HOH HOH . J 6 HOH A 183 683 215 HOH HOH . J 6 HOH A 184 684 48 HOH HOH . J 6 HOH A 185 685 63 HOH HOH . J 6 HOH A 186 686 17 HOH HOH . J 6 HOH A 187 687 31 HOH HOH . J 6 HOH A 188 688 205 HOH HOH . J 6 HOH A 189 689 161 HOH HOH . J 6 HOH A 190 690 47 HOH HOH . J 6 HOH A 191 691 208 HOH HOH . J 6 HOH A 192 692 195 HOH HOH . J 6 HOH A 193 693 263 HOH HOH . J 6 HOH A 194 694 75 HOH HOH . J 6 HOH A 195 695 236 HOH HOH . J 6 HOH A 196 696 249 HOH HOH . J 6 HOH A 197 697 260 HOH HOH . J 6 HOH A 198 698 311 HOH HOH . J 6 HOH A 199 699 254 HOH HOH . J 6 HOH A 200 700 309 HOH HOH . J 6 HOH A 201 701 168 HOH HOH . J 6 HOH A 202 702 175 HOH HOH . J 6 HOH A 203 703 10 HOH HOH . J 6 HOH A 204 704 290 HOH HOH . J 6 HOH A 205 705 293 HOH HOH . J 6 HOH A 206 706 62 HOH HOH . J 6 HOH A 207 707 71 HOH HOH . J 6 HOH A 208 708 37 HOH HOH . J 6 HOH A 209 709 83 HOH HOH . J 6 HOH A 210 710 58 HOH HOH . J 6 HOH A 211 711 39 HOH HOH . J 6 HOH A 212 712 280 HOH HOH . J 6 HOH A 213 713 12 HOH HOH . J 6 HOH A 214 714 16 HOH HOH . J 6 HOH A 215 715 225 HOH HOH . J 6 HOH A 216 716 281 HOH HOH . J 6 HOH A 217 717 72 HOH HOH . J 6 HOH A 218 718 50 HOH HOH . J 6 HOH A 219 719 88 HOH HOH . J 6 HOH A 220 720 167 HOH HOH . J 6 HOH A 221 721 80 HOH HOH . J 6 HOH A 222 722 20 HOH HOH . J 6 HOH A 223 723 52 HOH HOH . J 6 HOH A 224 724 282 HOH HOH . J 6 HOH A 225 725 49 HOH HOH . J 6 HOH A 226 726 13 HOH HOH . J 6 HOH A 227 727 232 HOH HOH . J 6 HOH A 228 728 7 HOH HOH . J 6 HOH A 229 729 90 HOH HOH . J 6 HOH A 230 730 198 HOH HOH . J 6 HOH A 231 731 45 HOH HOH . J 6 HOH A 232 732 77 HOH HOH . J 6 HOH A 233 733 312 HOH HOH . J 6 HOH A 234 734 262 HOH HOH . J 6 HOH A 235 735 67 HOH HOH . J 6 HOH A 236 736 85 HOH HOH . J 6 HOH A 237 737 26 HOH HOH . J 6 HOH A 238 738 87 HOH HOH . J 6 HOH A 239 739 70 HOH HOH . J 6 HOH A 240 740 19 HOH HOH . J 6 HOH A 241 741 292 HOH HOH . J 6 HOH A 242 742 274 HOH HOH . J 6 HOH A 243 743 35 HOH HOH . J 6 HOH A 244 744 44 HOH HOH . J 6 HOH A 245 745 79 HOH HOH . J 6 HOH A 246 746 46 HOH HOH . J 6 HOH A 247 747 259 HOH HOH . J 6 HOH A 248 748 29 HOH HOH . J 6 HOH A 249 749 84 HOH HOH . J 6 HOH A 250 750 313 HOH HOH . J 6 HOH A 251 751 59 HOH HOH . J 6 HOH A 252 752 310 HOH HOH . J 6 HOH A 253 753 33 HOH HOH . J 6 HOH A 254 754 283 HOH HOH . J 6 HOH A 255 755 314 HOH HOH . J 6 HOH A 256 756 89 HOH HOH . J 6 HOH A 257 757 65 HOH HOH . J 6 HOH A 258 758 302 HOH HOH . J 6 HOH A 259 759 307 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S DMS . . . I 2 -1.166 -18.877 20.992 1 33.67 ? S DMS 408 A 1 HETATM 2 O O DMS . . . I 2 0.108 -19.597 20.675 1 32.89 ? O DMS 408 A 1 HETATM 3 C C1 DMS . . . I 2 -2.312 -19.145 19.624 1 33.6 ? C1 DMS 408 A 1 HETATM 4 C C2 DMS . . . I 2 -0.924 -17.099 20.738 1 31.31 ? C2 DMS 408 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #