data_8Q1B # _model_server_result.job_id J9Db_KUpX_yYFOLU44d9Ew _model_server_result.datetime_utc '2024-11-04 18:13:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q1b # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"MB","auth_seq_id":604}' # _entry.id 8Q1B # _exptl.entry_id 8Q1B _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 40.078 _entity.id 34 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CALCIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8Q1B _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q1B _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details 33-meric _pdbx_struct_assembly.oligomeric_count 33 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,KB,LB,MB,NB,OB,PB,QB,RB,SB,TB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 34 _struct_asym.id MB _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 E SG CYS 177 E CYS 177 1_555 E SG CYS 193 E CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf2 F SG CYS 157 F CYS 157 1_555 F SG CYS 204 F CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf3 F SG CYS 163 F CYS 163 1_555 F SG CYS 200 F CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf4 F SG CYS 173 F CYS 173 1_555 F SG CYS 190 F CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf5 O SG CYS 172 P CYS 172 1_555 O SG CYS 191 P CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.587 ? disulf ? disulf6 O SG CYS 177 P CYS 177 1_555 O SG CYS 193 P CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf7 P SG CYS 157 Q CYS 157 1_555 P SG CYS 204 Q CYS 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf8 P SG CYS 163 Q CYS 163 1_555 P SG CYS 200 Q CYS 200 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf9 P SG CYS 173 Q CYS 173 1_555 P SG CYS 190 Q CYS 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf10 X SG CYS 143 d CYS 143 1_555 X SG CYS 146 d CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.805 ? disulf ? disulf11 DA SG CYS 33 j CYS 33 1_555 DA SG CYS 65 j CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf12 DA SG CYS 43 j CYS 43 1_555 DA SG CYS 54 j CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? covale ? covale1 A CD ARG 456 A ARG 456 1_555 JA O22 PCF . A PCF 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.126 ? covale ? covale2 C NH2 ARG 99 C ARG 99 1_555 NA O2A HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.298 ? covale ? covale3 E CB CYS 172 E CYS 172 1_555 RA S1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? covale ? covale4 E SG CYS 172 E CYS 172 1_555 RA S1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.957 ? covale ? covale5 O CB CYS 191 P CYS 191 1_555 FB S1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.89 ? metalc ? metalc1 A NE2 HIS 66 A HIS 66 1_555 HA ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc2 A NE2 HIS 70 A HIS 70 1_555 HA ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc3 A OE1 GLU 146 A GLU 146 1_555 HA ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.988 ? metalc ? metalc4 A OE2 GLU 146 A GLU 146 1_555 HA ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc5 C NE2 HIS 82 C HIS 82 1_555 MA FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc6 C NE2 HIS 96 C HIS 96 1_555 NA FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.339 ? metalc ? metalc7 C NE2 HIS 183 C HIS 183 1_555 MA FE HEM . C HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc8 C NE2 HIS 197 C HIS 197 1_555 NA FE HEM . C HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.276 ? metalc ? metalc9 D NE2 HIS 106 D HIS 106 1_555 PA FE HEC . D HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.982 ? metalc ? metalc10 E SG CYS 172 E CYS 172 1_555 RA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.488 ? metalc ? metalc11 E ND1 HIS 174 E HIS 174 1_555 RA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.431 ? metalc ? metalc12 E SG CYS 191 E CYS 191 1_555 RA FE1 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc13 E ND1 HIS 194 E HIS 194 1_555 RA FE2 FES . E FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc14 K NE2 HIS 66 L HIS 66 1_555 VA ZN ZN . L ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc15 K NE2 HIS 70 L HIS 70 1_555 VA ZN ZN . L ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc16 K OE1 GLU 146 L GLU 146 1_555 VA ZN ZN . L ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.987 ? metalc ? metalc17 K OE2 GLU 146 L GLU 146 1_555 VA ZN ZN . L ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc18 M NE2 HIS 82 N HIS 82 1_555 YA FE HEM . N HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.236 ? metalc ? metalc19 M NE2 HIS 96 N HIS 96 1_555 ZA FE HEM . N HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.375 ? metalc ? metalc20 M NE2 HIS 183 N HIS 183 1_555 YA FE HEM . N HEM 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc21 M NE2 HIS 197 N HIS 197 1_555 ZA FE HEM . N HEM 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc22 N NE2 HIS 106 O HIS 106 1_555 DB FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2 ? metalc ? metalc23 N SD MET 225 O MET 225 1_555 DB FE HEC . O HEC 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc24 O SG CYS 172 P CYS 172 1_555 FB FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.683 ? metalc ? metalc25 O ND1 HIS 174 P HIS 174 1_555 FB FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.5 ? metalc ? metalc26 O SG CYS 191 P CYS 191 1_555 FB FE2 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc27 O ND1 HIS 194 P HIS 194 1_555 FB FE1 FES . P FES 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.293 ? metalc ? metalc28 U O GLU 45 a GLU 45 1_555 MB CA CA . a CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.483 ? metalc ? metalc29 U O GLY 50 a GLY 50 1_555 MB CA CA . a CA 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.818 ? metalc ? metalc30 U NE2 HIS 68 a HIS 68 1_555 JB FE HEA . a HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.275 ? metalc ? metalc31 U ND1 HIS 247 a HIS 247 1_555 LB CU CU . a CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.133 ? metalc ? metalc32 U NE2 HIS 297 a HIS 297 1_555 LB CU CU . a CU 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.35 ? metalc ? metalc33 U NE2 HIS 383 a HIS 383 1_555 KB FE HEA . a HEA 602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.501 ? metalc ? metalc34 U NE2 HIS 385 a HIS 385 1_555 JB FE HEA . a HEA 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? metalc ? metalc35 V ND1 HIS 182 b HIS 182 1_555 QB CU2 CUA . b CUA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.643 ? metalc ? metalc36 V OE1 GLU 219 b GLU 219 1_555 OB MG MG . b MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc37 V OE2 GLU 219 b GLU 219 1_555 OB MG MG . b MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc38 V O GLU 219 b GLU 219 1_555 QB CU1 CUA . b CUA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc39 V ND1 HIS 225 b HIS 225 1_555 QB CU1 CUA . b CUA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.717 ? metalc ? metalc40 X SG CYS 120 d CYS 120 1_555 SB ZN ZN . d ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc41 X NE2 HIS 128 d HIS 128 1_555 SB ZN ZN . d ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc42 X SG CYS 143 d CYS 143 1_555 SB ZN ZN . d ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.335 ? metalc ? metalc43 X SG CYS 146 d CYS 146 1_555 SB ZN ZN . d ZN 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? # _chem_comp.formula 'Ca 2' _chem_comp.formula_weight 40.078 _chem_comp.id CA _chem_comp.mon_nstd_flag . _chem_comp.name 'CALCIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8Q1B _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code HA 24 ZN A 1 501 501 ZN ZN . IA 25 CDL A 1 502 502 CDL CDL . JA 26 PCF A 1 503 503 PCF PCF . KA 27 PEF A 1 504 406 PEF PEF . LA 26 PCF A 1 505 101 PCF PCF . MA 28 HEM C 1 401 401 HEM HEM . NA 28 HEM C 1 402 402 HEM HEM . OA 29 U10 C 1 403 403 U10 U10 . PA 30 HEC D 1 401 401 HEC HEC . QA 27 PEF D 1 402 302 PEF PEF . RA 31 FES E 1 301 301 FES FES . SA 25 CDL H 1 101 404 CDL CDL . TA 25 CDL H 1 102 405 CDL CDL . UA 27 PEF J 1 101 101 PEF PEF . VA 24 ZN L 1 501 501 ZN ZN . WA 25 CDL L 1 502 502 CDL CDL . XA 26 PCF L 1 503 503 PCF PCF . YA 28 HEM N 1 401 401 HEM HEM . ZA 28 HEM N 1 402 402 HEM HEM . AB 29 U10 N 1 403 403 U10 U10 . BB 27 PEF N 1 404 406 PEF PEF . CB 27 PEF N 1 405 101 PEF PEF . DB 30 HEC O 1 401 401 HEC HEC . EB 27 PEF O 1 402 302 PEF PEF . FB 31 FES P 1 301 301 FES FES . GB 25 CDL S 1 101 404 CDL CDL . HB 25 CDL S 1 102 405 CDL CDL . IB 26 PCF T 1 101 101 PCF PCF . JB 32 HEA a 1 601 601 HEA HEA . KB 32 HEA a 1 602 602 HEA HEA . LB 33 CU a 1 603 603 CU CU . MB 34 CA a 1 604 605 CA CA . NB 27 PEF a 1 605 301 PEF PEF . OB 35 MG b 1 301 604 MG MG . PB 27 PEF b 1 302 606 PEF PEF . QB 36 CUA b 1 303 301 CUA CUA . RB 27 PEF c 1 301 302 PEF PEF . SB 24 ZN d 1 201 201 ZN ZN . TB 27 PEF k 1 201 303 PEF PEF . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol CA _atom_site.label_atom_id CA _atom_site.label_comp_id CA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id MB _atom_site.label_entity_id 34 _atom_site.Cartn_x 219.118 _atom_site.Cartn_y 236.186 _atom_site.Cartn_z 171.015 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 185.32 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id CA _atom_site.auth_comp_id CA _atom_site.auth_seq_id 604 _atom_site.auth_asym_id a _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 79 _model_server_stats.query_time_ms 303 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 1 #