data_8Q1C # _model_server_result.job_id E7NLl3Rv74LNWgTI7xTX-A _model_server_result.datetime_utc '2024-10-12 14:29:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q1c # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 8Q1C # _exptl.entry_id 8Q1C _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.637 _cell.angle_gamma 90 _cell.entry_id 8Q1C _cell.length_a 38.65 _cell.length_b 117.251 _cell.length_c 53.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q1C _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 8 A ASP 8 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? metalc ? metalc2 A O ASN 10 A ASN 10 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc3 A OD1 ASP 170 A ASP 170 1_555 C MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc4 C MG MG . A MG 301 1_555 J O HOH . A HOH 440 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? metalc ? metalc5 C MG MG . A MG 301 1_555 J O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? metalc ? metalc6 C MG MG . A MG 301 1_555 J O HOH . A HOH 463 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.185 ? metalc ? metalc7 B OD2 ASP 8 B ASP 8 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.318 ? metalc ? metalc8 B O ASN 10 B ASN 10 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.156 ? metalc ? metalc9 B OE1 GLU 169 B GLU 169 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.933 ? metalc ? metalc10 B OD1 ASP 170 B ASP 170 1_555 G MG MG . B MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc11 G MG MG . B MG 301 1_555 K O HOH . B HOH 456 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 70 n n C1 C2 EDO sing 71 n n C1 H11 EDO sing 72 n n C1 H12 EDO sing 73 n n O1 HO1 EDO sing 74 n n C2 O2 EDO sing 75 n n C2 H21 EDO sing 76 n n C2 H22 EDO sing 77 n n O2 HO2 EDO sing 78 n n # _atom_sites.entry_id 8Q1C _atom_sites.fract_transf_matrix[1][1] 0.025873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00393 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008529 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018995 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 301 1 MG MG . D 3 EDO A 1 302 1 EDO EDO . E 4 PO4 A 1 303 1 PO4 PO4 . F 5 TRS A 1 304 1 TRS TRS . G 2 MG B 1 301 2 MG MG . H 4 PO4 B 1 302 2 PO4 PO4 . I 5 TRS B 1 303 2 TRS TRS . J 6 HOH A 1 401 104 HOH HOH . J 6 HOH A 2 402 23 HOH HOH . J 6 HOH A 3 403 185 HOH HOH . J 6 HOH A 4 404 164 HOH HOH . J 6 HOH A 5 405 69 HOH HOH . J 6 HOH A 6 406 83 HOH HOH . J 6 HOH A 7 407 138 HOH HOH . J 6 HOH A 8 408 143 HOH HOH . J 6 HOH A 9 409 38 HOH HOH . J 6 HOH A 10 410 51 HOH HOH . J 6 HOH A 11 411 98 HOH HOH . J 6 HOH A 12 412 32 HOH HOH . J 6 HOH A 13 413 34 HOH HOH . J 6 HOH A 14 414 151 HOH HOH . J 6 HOH A 15 415 42 HOH HOH . J 6 HOH A 16 416 115 HOH HOH . J 6 HOH A 17 417 67 HOH HOH . J 6 HOH A 18 418 47 HOH HOH . J 6 HOH A 19 419 61 HOH HOH . J 6 HOH A 20 420 43 HOH HOH . J 6 HOH A 21 421 93 HOH HOH . J 6 HOH A 22 422 60 HOH HOH . J 6 HOH A 23 423 9 HOH HOH . J 6 HOH A 24 424 82 HOH HOH . J 6 HOH A 25 425 14 HOH HOH . J 6 HOH A 26 426 145 HOH HOH . J 6 HOH A 27 427 40 HOH HOH . J 6 HOH A 28 428 110 HOH HOH . J 6 HOH A 29 429 53 HOH HOH . J 6 HOH A 30 430 135 HOH HOH . J 6 HOH A 31 431 48 HOH HOH . J 6 HOH A 32 432 11 HOH HOH . J 6 HOH A 33 433 153 HOH HOH . J 6 HOH A 34 434 141 HOH HOH . J 6 HOH A 35 435 119 HOH HOH . J 6 HOH A 36 436 106 HOH HOH . J 6 HOH A 37 437 45 HOH HOH . J 6 HOH A 38 438 4 HOH HOH . J 6 HOH A 39 439 39 HOH HOH . J 6 HOH A 40 440 86 HOH HOH . J 6 HOH A 41 441 7 HOH HOH . J 6 HOH A 42 442 50 HOH HOH . J 6 HOH A 43 443 63 HOH HOH . J 6 HOH A 44 444 144 HOH HOH . J 6 HOH A 45 445 65 HOH HOH . J 6 HOH A 46 446 125 HOH HOH . J 6 HOH A 47 447 101 HOH HOH . J 6 HOH A 48 448 134 HOH HOH . J 6 HOH A 49 449 73 HOH HOH . J 6 HOH A 50 450 10 HOH HOH . J 6 HOH A 51 451 15 HOH HOH . J 6 HOH A 52 452 2 HOH HOH . J 6 HOH A 53 453 154 HOH HOH . J 6 HOH A 54 454 54 HOH HOH . J 6 HOH A 55 455 8 HOH HOH . J 6 HOH A 56 456 173 HOH HOH . J 6 HOH A 57 457 27 HOH HOH . J 6 HOH A 58 458 13 HOH HOH . J 6 HOH A 59 459 44 HOH HOH . J 6 HOH A 60 460 124 HOH HOH . J 6 HOH A 61 461 3 HOH HOH . J 6 HOH A 62 462 170 HOH HOH . J 6 HOH A 63 463 64 HOH HOH . J 6 HOH A 64 464 95 HOH HOH . J 6 HOH A 65 465 36 HOH HOH . J 6 HOH A 66 466 114 HOH HOH . J 6 HOH A 67 467 97 HOH HOH . J 6 HOH A 68 468 172 HOH HOH . J 6 HOH A 69 469 166 HOH HOH . J 6 HOH A 70 470 146 HOH HOH . J 6 HOH A 71 471 175 HOH HOH . J 6 HOH A 72 472 96 HOH HOH . J 6 HOH A 73 473 152 HOH HOH . J 6 HOH A 74 474 128 HOH HOH . J 6 HOH A 75 475 22 HOH HOH . J 6 HOH A 76 476 29 HOH HOH . J 6 HOH A 77 477 126 HOH HOH . J 6 HOH A 78 478 1 HOH HOH . J 6 HOH A 79 479 132 HOH HOH . J 6 HOH A 80 480 177 HOH HOH . J 6 HOH A 81 481 107 HOH HOH . J 6 HOH A 82 482 156 HOH HOH . J 6 HOH A 83 483 137 HOH HOH . J 6 HOH A 84 484 111 HOH HOH . J 6 HOH A 85 485 89 HOH HOH . J 6 HOH A 86 486 80 HOH HOH . J 6 HOH A 87 487 182 HOH HOH . J 6 HOH A 88 488 118 HOH HOH . J 6 HOH A 89 489 5 HOH HOH . J 6 HOH A 90 490 66 HOH HOH . J 6 HOH A 91 491 183 HOH HOH . J 6 HOH A 92 492 72 HOH HOH . J 6 HOH A 93 493 117 HOH HOH . J 6 HOH A 94 494 130 HOH HOH . J 6 HOH A 95 495 176 HOH HOH . J 6 HOH A 96 496 113 HOH HOH . J 6 HOH A 97 497 90 HOH HOH . J 6 HOH A 98 498 25 HOH HOH . J 6 HOH A 99 499 62 HOH HOH . J 6 HOH A 100 500 116 HOH HOH . J 6 HOH A 101 501 94 HOH HOH . J 6 HOH A 102 502 33 HOH HOH . J 6 HOH A 103 503 49 HOH HOH . J 6 HOH A 104 504 88 HOH HOH . J 6 HOH A 105 505 28 HOH HOH . K 6 HOH B 1 401 71 HOH HOH . K 6 HOH B 2 402 157 HOH HOH . K 6 HOH B 3 403 84 HOH HOH . K 6 HOH B 4 404 16 HOH HOH . K 6 HOH B 5 405 159 HOH HOH . K 6 HOH B 6 406 35 HOH HOH . K 6 HOH B 7 407 76 HOH HOH . K 6 HOH B 8 408 180 HOH HOH . K 6 HOH B 9 409 179 HOH HOH . K 6 HOH B 10 410 161 HOH HOH . K 6 HOH B 11 411 59 HOH HOH . K 6 HOH B 12 412 147 HOH HOH . K 6 HOH B 13 413 26 HOH HOH . K 6 HOH B 14 414 99 HOH HOH . K 6 HOH B 15 415 57 HOH HOH . K 6 HOH B 16 416 148 HOH HOH . K 6 HOH B 17 417 55 HOH HOH . K 6 HOH B 18 418 122 HOH HOH . K 6 HOH B 19 419 123 HOH HOH . K 6 HOH B 20 420 103 HOH HOH . K 6 HOH B 21 421 81 HOH HOH . K 6 HOH B 22 422 6 HOH HOH . K 6 HOH B 23 423 102 HOH HOH . K 6 HOH B 24 424 77 HOH HOH . K 6 HOH B 25 425 24 HOH HOH . K 6 HOH B 26 426 85 HOH HOH . K 6 HOH B 27 427 52 HOH HOH . K 6 HOH B 28 428 168 HOH HOH . K 6 HOH B 29 429 150 HOH HOH . K 6 HOH B 30 430 136 HOH HOH . K 6 HOH B 31 431 140 HOH HOH . K 6 HOH B 32 432 121 HOH HOH . K 6 HOH B 33 433 131 HOH HOH . K 6 HOH B 34 434 169 HOH HOH . K 6 HOH B 35 435 58 HOH HOH . K 6 HOH B 36 436 127 HOH HOH . K 6 HOH B 37 437 70 HOH HOH . K 6 HOH B 38 438 158 HOH HOH . K 6 HOH B 39 439 155 HOH HOH . K 6 HOH B 40 440 171 HOH HOH . K 6 HOH B 41 441 31 HOH HOH . K 6 HOH B 42 442 160 HOH HOH . K 6 HOH B 43 443 18 HOH HOH . K 6 HOH B 44 444 100 HOH HOH . K 6 HOH B 45 445 178 HOH HOH . K 6 HOH B 46 446 12 HOH HOH . K 6 HOH B 47 447 46 HOH HOH . K 6 HOH B 48 448 129 HOH HOH . K 6 HOH B 49 449 56 HOH HOH . K 6 HOH B 50 450 162 HOH HOH . K 6 HOH B 51 451 20 HOH HOH . K 6 HOH B 52 452 74 HOH HOH . K 6 HOH B 53 453 184 HOH HOH . K 6 HOH B 54 454 19 HOH HOH . K 6 HOH B 55 455 163 HOH HOH . K 6 HOH B 56 456 92 HOH HOH . K 6 HOH B 57 457 139 HOH HOH . K 6 HOH B 58 458 17 HOH HOH . K 6 HOH B 59 459 181 HOH HOH . K 6 HOH B 60 460 91 HOH HOH . K 6 HOH B 61 461 142 HOH HOH . K 6 HOH B 62 462 37 HOH HOH . K 6 HOH B 63 463 149 HOH HOH . K 6 HOH B 64 464 167 HOH HOH . K 6 HOH B 65 465 79 HOH HOH . K 6 HOH B 66 466 133 HOH HOH . K 6 HOH B 67 467 41 HOH HOH . K 6 HOH B 68 468 78 HOH HOH . K 6 HOH B 69 469 21 HOH HOH . K 6 HOH B 70 470 165 HOH HOH . K 6 HOH B 71 471 174 HOH HOH . K 6 HOH B 72 472 75 HOH HOH . K 6 HOH B 73 473 87 HOH HOH . K 6 HOH B 74 474 120 HOH HOH . K 6 HOH B 75 475 109 HOH HOH . K 6 HOH B 76 476 68 HOH HOH . K 6 HOH B 77 477 105 HOH HOH . K 6 HOH B 78 478 30 HOH HOH . K 6 HOH B 79 479 112 HOH HOH . K 6 HOH B 80 480 108 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . D 3 -2.88 -4.876 -10.118 1 31.8 0 C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . D 3 -3.757 -4.665 -9.022 1 32.17 0 O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . D 3 -3.074 -6.239 -10.656 1 43.75 0 C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . D 3 -4.457 -6.422 -10.92 1 34.69 0 O2 EDO 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #