data_8Q1E # _model_server_result.job_id Oi2MXA8fZ_WvPSDO01SJSQ _model_server_result.datetime_utc '2024-11-23 15:29:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q1e # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8Q1E # _exptl.entry_id 8Q1E _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.116 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,6-di-O-phosphono-beta-D-fructofuranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.661 _cell.angle_gamma 90 _cell.entry_id 8Q1E _cell.length_a 32.12 _cell.length_b 83.757 _cell.length_c 38.89 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q1E _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD2 ASP 8 A ASP 8 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc2 A OD1 ASP 8 A ASP 8 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? metalc ? metalc3 A O ASN 10 A ASN 10 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.055 ? metalc ? metalc4 A OE1 GLU 169 A GLU 169 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc5 A OD1 ASP 170 A ASP 170 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? metalc ? metalc6 B O6P FBP . A FBP 301 1_555 C MG MG . A MG 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc7 B O4P FBP . A FBP 301 1_555 D MG MG . A MG 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc8 C MG MG . A MG 302 1_555 G O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? metalc ? metalc9 C MG MG . A MG 302 1_555 G O HOH . A HOH 427 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc10 D MG MG . A MG 303 1_555 G O HOH . A HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? metalc ? metalc11 D MG MG . A MG 303 1_555 G O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc12 D MG MG . A MG 303 1_555 G O HOH . A HOH 491 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc13 E MG MG . A MG 304 1_555 G O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.137 ? metalc ? metalc14 E MG MG . A MG 304 1_555 G O HOH . A HOH 509 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.248 ? metalc ? metalc15 E MG MG . A MG 304 1_555 G O HOH . A HOH 516 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc16 E MG MG . A MG 304 1_555 G O HOH . A HOH 521 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.261 ? metalc ? metalc17 E MG MG . A MG 304 1_555 G O HOH . A HOH 527 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.414 ? # _chem_comp.formula 'C6 H14 O12 P2' _chem_comp.formula_weight 340.116 _chem_comp.id FBP _chem_comp.mon_nstd_flag n _chem_comp.name 1,6-di-O-phosphono-beta-D-fructofuranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms BETA-FRUCTOSE-1,6-DIPHOSPHATE;FRUCTOSE-1,6-BISPHOSPHATE;1,6-di-O-phosphono-beta-D-fructose;1,6-di-O-phosphono-D-fructose;1,6-di-O-phosphono-fructose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P1 O1P FBP doub 79 n n P1 O2P FBP sing 80 n n P1 O3P FBP sing 81 n n P1 O1 FBP sing 82 n n O2P HOP2 FBP sing 83 n n O3P HOP3 FBP sing 84 n n O1 C1 FBP sing 85 n n C1 C2 FBP sing 86 n n C1 H11 FBP sing 87 n n C1 H12 FBP sing 88 n n C2 O2 FBP sing 89 n n C2 C3 FBP sing 90 n n C2 O5 FBP sing 91 n n O2 HO2 FBP sing 92 n n C3 O3 FBP sing 93 n n C3 C4 FBP sing 94 n n C3 H3 FBP sing 95 n n O3 HO3 FBP sing 96 n n C4 O4 FBP sing 97 n n C4 C5 FBP sing 98 n n C4 H4 FBP sing 99 n n O4 HO4 FBP sing 100 n n C5 O5 FBP sing 101 n n C5 C6 FBP sing 102 n n C5 H5 FBP sing 103 n n C6 O6 FBP sing 104 n n C6 H61 FBP sing 105 n n C6 H62 FBP sing 106 n n O6 P2 FBP sing 107 n n P2 O4P FBP doub 108 n n P2 O5P FBP sing 109 n n P2 O6P FBP sing 110 n n O5P HOP5 FBP sing 111 n n O6P HOP6 FBP sing 112 n n # _pdbx_chem_comp_identifier.comp_id FBP _pdbx_chem_comp_identifier.identifier b-D-Fruf1PO36PO3 _pdbx_chem_comp_identifier.type 'IUPAC CARBOHYDRATE SYMBOL' _pdbx_chem_comp_identifier.program PDB-CARE _pdbx_chem_comp_identifier.program_version 1 # _atom_sites.entry_id 8Q1E _atom_sites.fract_transf_matrix[1][1] 0.031133 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.01174 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FBP A 1 301 1 FBP FBP . C 3 MG A 1 302 1 MG MG . D 3 MG A 1 303 2 MG MG . E 3 MG A 1 304 3 MG MG . F 4 EDO A 1 305 1 EDO EDO . G 5 HOH A 1 401 107 HOH HOH . G 5 HOH A 2 402 112 HOH HOH . G 5 HOH A 3 403 71 HOH HOH . G 5 HOH A 4 404 64 HOH HOH . G 5 HOH A 5 405 29 HOH HOH . G 5 HOH A 6 406 111 HOH HOH . G 5 HOH A 7 407 34 HOH HOH . G 5 HOH A 8 408 57 HOH HOH . G 5 HOH A 9 409 108 HOH HOH . G 5 HOH A 10 410 31 HOH HOH . G 5 HOH A 11 411 114 HOH HOH . G 5 HOH A 12 412 39 HOH HOH . G 5 HOH A 13 413 83 HOH HOH . G 5 HOH A 14 414 41 HOH HOH . G 5 HOH A 15 415 9 HOH HOH . G 5 HOH A 16 416 80 HOH HOH . G 5 HOH A 17 417 54 HOH HOH . G 5 HOH A 18 418 86 HOH HOH . G 5 HOH A 19 419 2 HOH HOH . G 5 HOH A 20 420 38 HOH HOH . G 5 HOH A 21 421 16 HOH HOH . G 5 HOH A 22 422 63 HOH HOH . G 5 HOH A 23 423 104 HOH HOH . G 5 HOH A 24 424 60 HOH HOH . G 5 HOH A 25 425 93 HOH HOH . G 5 HOH A 26 426 67 HOH HOH . G 5 HOH A 27 427 3 HOH HOH . G 5 HOH A 28 428 12 HOH HOH . G 5 HOH A 29 429 42 HOH HOH . G 5 HOH A 30 430 123 HOH HOH . G 5 HOH A 31 431 30 HOH HOH . G 5 HOH A 32 432 18 HOH HOH . G 5 HOH A 33 433 62 HOH HOH . G 5 HOH A 34 434 69 HOH HOH . G 5 HOH A 35 435 17 HOH HOH . G 5 HOH A 36 436 78 HOH HOH . G 5 HOH A 37 437 13 HOH HOH . G 5 HOH A 38 438 32 HOH HOH . G 5 HOH A 39 439 27 HOH HOH . G 5 HOH A 40 440 26 HOH HOH . G 5 HOH A 41 441 22 HOH HOH . G 5 HOH A 42 442 47 HOH HOH . G 5 HOH A 43 443 7 HOH HOH . G 5 HOH A 44 444 11 HOH HOH . G 5 HOH A 45 445 127 HOH HOH . G 5 HOH A 46 446 58 HOH HOH . G 5 HOH A 47 447 4 HOH HOH . G 5 HOH A 48 448 91 HOH HOH . G 5 HOH A 49 449 122 HOH HOH . G 5 HOH A 50 450 92 HOH HOH . G 5 HOH A 51 451 55 HOH HOH . G 5 HOH A 52 452 15 HOH HOH . G 5 HOH A 53 453 44 HOH HOH . G 5 HOH A 54 454 25 HOH HOH . G 5 HOH A 55 455 98 HOH HOH . G 5 HOH A 56 456 124 HOH HOH . G 5 HOH A 57 457 95 HOH HOH . G 5 HOH A 58 458 52 HOH HOH . G 5 HOH A 59 459 59 HOH HOH . G 5 HOH A 60 460 90 HOH HOH . G 5 HOH A 61 461 14 HOH HOH . G 5 HOH A 62 462 87 HOH HOH . G 5 HOH A 63 463 110 HOH HOH . G 5 HOH A 64 464 89 HOH HOH . G 5 HOH A 65 465 77 HOH HOH . G 5 HOH A 66 466 102 HOH HOH . G 5 HOH A 67 467 99 HOH HOH . G 5 HOH A 68 468 61 HOH HOH . G 5 HOH A 69 469 49 HOH HOH . G 5 HOH A 70 470 5 HOH HOH . G 5 HOH A 71 471 6 HOH HOH . G 5 HOH A 72 472 50 HOH HOH . G 5 HOH A 73 473 28 HOH HOH . G 5 HOH A 74 474 33 HOH HOH . G 5 HOH A 75 475 21 HOH HOH . G 5 HOH A 76 476 45 HOH HOH . G 5 HOH A 77 477 19 HOH HOH . G 5 HOH A 78 478 126 HOH HOH . G 5 HOH A 79 479 70 HOH HOH . G 5 HOH A 80 480 100 HOH HOH . G 5 HOH A 81 481 66 HOH HOH . G 5 HOH A 82 482 81 HOH HOH . G 5 HOH A 83 483 73 HOH HOH . G 5 HOH A 84 484 65 HOH HOH . G 5 HOH A 85 485 48 HOH HOH . G 5 HOH A 86 486 56 HOH HOH . G 5 HOH A 87 487 106 HOH HOH . G 5 HOH A 88 488 101 HOH HOH . G 5 HOH A 89 489 37 HOH HOH . G 5 HOH A 90 490 97 HOH HOH . G 5 HOH A 91 491 1 HOH HOH . G 5 HOH A 92 492 115 HOH HOH . G 5 HOH A 93 493 23 HOH HOH . G 5 HOH A 94 494 20 HOH HOH . G 5 HOH A 95 495 79 HOH HOH . G 5 HOH A 96 496 10 HOH HOH . G 5 HOH A 97 497 40 HOH HOH . G 5 HOH A 98 498 24 HOH HOH . G 5 HOH A 99 499 36 HOH HOH . G 5 HOH A 100 500 75 HOH HOH . G 5 HOH A 101 501 82 HOH HOH . G 5 HOH A 102 502 46 HOH HOH . G 5 HOH A 103 503 125 HOH HOH . G 5 HOH A 104 504 68 HOH HOH . G 5 HOH A 105 505 105 HOH HOH . G 5 HOH A 106 506 88 HOH HOH . G 5 HOH A 107 507 113 HOH HOH . G 5 HOH A 108 508 43 HOH HOH . G 5 HOH A 109 509 117 HOH HOH . G 5 HOH A 110 510 94 HOH HOH . G 5 HOH A 111 511 109 HOH HOH . G 5 HOH A 112 512 96 HOH HOH . G 5 HOH A 113 513 85 HOH HOH . G 5 HOH A 114 514 76 HOH HOH . G 5 HOH A 115 515 121 HOH HOH . G 5 HOH A 116 516 116 HOH HOH . G 5 HOH A 117 517 8 HOH HOH . G 5 HOH A 118 518 120 HOH HOH . G 5 HOH A 119 519 84 HOH HOH . G 5 HOH A 120 520 72 HOH HOH . G 5 HOH A 121 521 119 HOH HOH . G 5 HOH A 122 522 74 HOH HOH . G 5 HOH A 123 523 51 HOH HOH . G 5 HOH A 124 524 53 HOH HOH . G 5 HOH A 125 525 35 HOH HOH . G 5 HOH A 126 526 103 HOH HOH . G 5 HOH A 127 527 118 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P1 FBP . . . B 2 9.258 3.373 5.876 1 16.34 0 P1 FBP 301 A 1 HETATM 2 O O1P FBP . . . B 2 9.642 2.586 4.637 1 17.31 0 O1P FBP 301 A 1 HETATM 3 O O2P FBP . . . B 2 10.21 3.251 7.048 1 16.57 0 O2P FBP 301 A 1 HETATM 4 O O3P FBP . . . B 2 7.806 3.056 6.272 1 16.38 0 O3P FBP 301 A 1 HETATM 5 O O1 FBP . . . B 2 9.326 4.941 5.516 1 16.22 0 O1 FBP 301 A 1 HETATM 6 C C1 FBP . . . B 2 8.497 5.465 4.466 1 16.89 0 C1 FBP 301 A 1 HETATM 7 C C2 FBP . . . B 2 9.036 6.796 4.001 1 14.76 0 C2 FBP 301 A 1 HETATM 8 O O2 FBP . . . B 2 8.167 7.408 3.074 1 16.58 0 O2 FBP 301 A 1 HETATM 9 C C3 FBP . . . B 2 10.424 6.67 3.352 1 16.15 0 C3 FBP 301 A 1 HETATM 10 O O3 FBP . . . B 2 10.385 6.308 1.989 1 17.24 0 O3 FBP 301 A 1 HETATM 11 C C4 FBP . . . B 2 10.997 8.044 3.628 1 16.73 0 C4 FBP 301 A 1 HETATM 12 O O4 FBP . . . B 2 12.418 8.064 3.551 1 16.9 0 O4 FBP 301 A 1 HETATM 13 C C5 FBP . . . B 2 10.537 8.234 5.069 1 17.02 0 C5 FBP 301 A 1 HETATM 14 O O5 FBP . . . B 2 9.228 7.62 5.136 1 16.52 0 O5 FBP 301 A 1 HETATM 15 C C6 FBP . . . B 2 10.47 9.666 5.51 1 16.06 0 C6 FBP 301 A 1 HETATM 16 O O6 FBP . . . B 2 10.274 9.758 6.928 1 14.22 0 O6 FBP 301 A 1 HETATM 17 P P2 FBP . . . B 2 9.929 11.199 7.547 1 14.31 0 P2 FBP 301 A 1 HETATM 18 O O4P FBP . . . B 2 8.595 11.599 6.915 1 15.3 0 O4P FBP 301 A 1 HETATM 19 O O5P FBP . . . B 2 9.91 10.966 9.03 1 13.37 0 O5P FBP 301 A 1 HETATM 20 O O6P FBP . . . B 2 11.073 12.108 7.068 1 14.56 0 O6P FBP 301 A 1 # _model_server_stats.io_time_ms 86 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 20 #