data_8Q1R # _model_server_result.job_id JkyVYTDnpyCTP0ogq4WFmA _model_server_result.datetime_utc '2024-11-28 17:08:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8q1r # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":702}' # _entry.id 8Q1R # _exptl.entry_id 8Q1R _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8Q1R _cell.length_a 103.039 _cell.length_b 103.039 _cell.length_c 55.727 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8Q1R _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 74 A CYS 395 1_555 A SG CYS 85 A CYS 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? covale ? covale1 B C ACE 1 E ACE 1 1_555 B N CYS 2 E CYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale2 B SG CYS 2 E CYS 2 1_555 E C31 IZS . E IZS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.818 ? covale ? covale3 B SG CYS 9 E CYS 10 1_555 E C10 IZS . E IZS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.8 ? covale ? covale4 B C LEU 10 E LEU 11 1_555 B N NH2 11 E NH2 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8Q1R _atom_sites.fract_transf_matrix[1][1] 0.009705 _atom_sites.fract_transf_matrix[1][2] 0.005603 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011206 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017945 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 SO4 A 1 701 1 SO4 SO4 . D 4 NA A 1 702 1 NA NA . E 5 IZS E 1 101 1380 IZS INH . F 6 HOH A 1 801 133 HOH HOH . F 6 HOH A 2 802 1214 HOH HOH . F 6 HOH A 3 803 1118 HOH HOH . F 6 HOH A 4 804 1125 HOH HOH . F 6 HOH A 5 805 1138 HOH HOH . F 6 HOH A 6 806 1106 HOH HOH . F 6 HOH A 7 807 1112 HOH HOH . F 6 HOH A 8 808 1279 HOH HOH . F 6 HOH A 9 809 1140 HOH HOH . F 6 HOH A 10 810 1164 HOH HOH . F 6 HOH A 11 811 1111 HOH HOH . F 6 HOH A 12 812 1192 HOH HOH . F 6 HOH A 13 813 1142 HOH HOH . F 6 HOH A 14 814 7 HOH HOH . F 6 HOH A 15 815 41 HOH HOH . F 6 HOH A 16 816 1145 HOH HOH . F 6 HOH A 17 817 158 HOH HOH . F 6 HOH A 18 818 1124 HOH HOH . F 6 HOH A 19 819 1190 HOH HOH . F 6 HOH A 20 820 180 HOH HOH . F 6 HOH A 21 821 1178 HOH HOH . F 6 HOH A 22 822 1150 HOH HOH . F 6 HOH A 23 823 42 HOH HOH . F 6 HOH A 24 824 1107 HOH HOH . F 6 HOH A 25 825 125 HOH HOH . F 6 HOH A 26 826 44 HOH HOH . F 6 HOH A 27 827 1146 HOH HOH . F 6 HOH A 28 828 193 HOH HOH . F 6 HOH A 29 829 87 HOH HOH . F 6 HOH A 30 830 173 HOH HOH . F 6 HOH A 31 831 1139 HOH HOH . F 6 HOH A 32 832 1135 HOH HOH . F 6 HOH A 33 833 1108 HOH HOH . F 6 HOH A 34 834 184 HOH HOH . F 6 HOH A 35 835 1166 HOH HOH . F 6 HOH A 36 836 196 HOH HOH . F 6 HOH A 37 837 51 HOH HOH . F 6 HOH A 38 838 1191 HOH HOH . F 6 HOH A 39 839 156 HOH HOH . F 6 HOH A 40 840 1162 HOH HOH . F 6 HOH A 41 841 1291 HOH HOH . F 6 HOH A 42 842 104 HOH HOH . F 6 HOH A 43 843 1120 HOH HOH . F 6 HOH A 44 844 1168 HOH HOH . F 6 HOH A 45 845 166 HOH HOH . F 6 HOH A 46 846 1129 HOH HOH . F 6 HOH A 47 847 1158 HOH HOH . F 6 HOH A 48 848 1141 HOH HOH . F 6 HOH A 49 849 1184 HOH HOH . F 6 HOH A 50 850 160 HOH HOH . F 6 HOH A 51 851 72 HOH HOH . F 6 HOH A 52 852 1211 HOH HOH . F 6 HOH A 53 853 198 HOH HOH . F 6 HOH A 54 854 191 HOH HOH . F 6 HOH A 55 855 1219 HOH HOH . F 6 HOH A 56 856 1188 HOH HOH . F 6 HOH A 57 857 1226 HOH HOH . F 6 HOH A 58 858 1186 HOH HOH . F 6 HOH A 59 859 80 HOH HOH . F 6 HOH A 60 860 151 HOH HOH . F 6 HOH A 61 861 1110 HOH HOH . F 6 HOH A 62 862 161 HOH HOH . F 6 HOH A 63 863 1157 HOH HOH . F 6 HOH A 64 864 1143 HOH HOH . F 6 HOH A 65 865 1187 HOH HOH . F 6 HOH A 66 866 8 HOH HOH . F 6 HOH A 67 867 188 HOH HOH . F 6 HOH A 68 868 1172 HOH HOH . F 6 HOH A 69 869 1147 HOH HOH . F 6 HOH A 70 870 1116 HOH HOH . F 6 HOH A 71 871 1249 HOH HOH . F 6 HOH A 72 872 121 HOH HOH . F 6 HOH A 73 873 1238 HOH HOH . F 6 HOH A 74 874 20 HOH HOH . F 6 HOH A 75 875 24 HOH HOH . F 6 HOH A 76 876 1203 HOH HOH . F 6 HOH A 77 877 1181 HOH HOH . F 6 HOH A 78 878 1155 HOH HOH . F 6 HOH A 79 879 1175 HOH HOH . F 6 HOH A 80 880 199 HOH HOH . F 6 HOH A 81 881 1160 HOH HOH . F 6 HOH A 82 882 59 HOH HOH . F 6 HOH A 83 883 1133 HOH HOH . F 6 HOH A 84 884 1252 HOH HOH . F 6 HOH A 85 885 1156 HOH HOH . F 6 HOH A 86 886 148 HOH HOH . F 6 HOH A 87 887 1176 HOH HOH . F 6 HOH A 88 888 152 HOH HOH . F 6 HOH A 89 889 122 HOH HOH . F 6 HOH A 90 890 1174 HOH HOH . F 6 HOH A 91 891 132 HOH HOH . F 6 HOH A 92 892 164 HOH HOH . F 6 HOH A 93 893 1109 HOH HOH . F 6 HOH A 94 894 1171 HOH HOH . F 6 HOH A 95 895 1318 HOH HOH . F 6 HOH A 96 896 1182 HOH HOH . F 6 HOH A 97 897 1269 HOH HOH . F 6 HOH A 98 898 149 HOH HOH . F 6 HOH A 99 899 187 HOH HOH . F 6 HOH A 100 900 1266 HOH HOH . F 6 HOH A 101 901 1200 HOH HOH . F 6 HOH A 102 902 1349 HOH HOH . F 6 HOH A 103 903 167 HOH HOH . F 6 HOH A 104 904 163 HOH HOH . F 6 HOH A 105 905 139 HOH HOH . F 6 HOH A 106 906 26 HOH HOH . F 6 HOH A 107 907 136 HOH HOH . F 6 HOH A 108 908 1316 HOH HOH . F 6 HOH A 109 909 1324 HOH HOH . F 6 HOH A 110 910 1263 HOH HOH . F 6 HOH A 111 911 1328 HOH HOH . F 6 HOH A 112 912 146 HOH HOH . F 6 HOH A 113 913 1227 HOH HOH . F 6 HOH A 114 914 90 HOH HOH . F 6 HOH A 115 915 123 HOH HOH . F 6 HOH A 116 916 1244 HOH HOH . F 6 HOH A 117 917 1189 HOH HOH . F 6 HOH A 118 918 1194 HOH HOH . F 6 HOH A 119 919 176 HOH HOH . F 6 HOH A 120 920 1231 HOH HOH . F 6 HOH A 121 921 1232 HOH HOH . F 6 HOH A 122 922 1161 HOH HOH . F 6 HOH A 123 923 1212 HOH HOH . F 6 HOH A 124 924 1183 HOH HOH . F 6 HOH A 125 925 30 HOH HOH . F 6 HOH A 126 926 1228 HOH HOH . F 6 HOH A 127 927 1163 HOH HOH . F 6 HOH A 128 928 1225 HOH HOH . F 6 HOH A 129 929 34 HOH HOH . F 6 HOH A 130 930 55 HOH HOH . F 6 HOH A 131 931 1103 HOH HOH . F 6 HOH A 132 932 1265 HOH HOH . F 6 HOH A 133 933 1273 HOH HOH . F 6 HOH A 134 934 1195 HOH HOH . F 6 HOH A 135 935 1202 HOH HOH . F 6 HOH A 136 936 1213 HOH HOH . F 6 HOH A 137 937 1234 HOH HOH . F 6 HOH A 138 938 1179 HOH HOH . F 6 HOH A 139 939 12 HOH HOH . F 6 HOH A 140 940 1159 HOH HOH . F 6 HOH A 141 941 1218 HOH HOH . F 6 HOH A 142 942 157 HOH HOH . F 6 HOH A 143 943 1198 HOH HOH . F 6 HOH A 144 944 1280 HOH HOH . F 6 HOH A 145 945 1251 HOH HOH . F 6 HOH A 146 946 1286 HOH HOH . F 6 HOH A 147 947 181 HOH HOH . F 6 HOH A 148 948 1239 HOH HOH . F 6 HOH A 149 949 1296 HOH HOH . F 6 HOH A 150 950 1277 HOH HOH . F 6 HOH A 151 951 202 HOH HOH . F 6 HOH A 152 952 58 HOH HOH . F 6 HOH A 153 953 1222 HOH HOH . F 6 HOH A 154 954 1233 HOH HOH . F 6 HOH A 155 955 1284 HOH HOH . F 6 HOH A 156 956 1282 HOH HOH . F 6 HOH A 157 957 39 HOH HOH . F 6 HOH A 158 958 1267 HOH HOH . F 6 HOH A 159 959 1268 HOH HOH . F 6 HOH A 160 960 1259 HOH HOH . F 6 HOH A 161 961 1285 HOH HOH . F 6 HOH A 162 962 1257 HOH HOH . F 6 HOH A 163 963 1250 HOH HOH . F 6 HOH A 164 964 185 HOH HOH . F 6 HOH A 165 965 86 HOH HOH . F 6 HOH A 166 966 1287 HOH HOH . F 6 HOH A 167 967 1295 HOH HOH . F 6 HOH A 168 968 45 HOH HOH . F 6 HOH A 169 969 1276 HOH HOH . F 6 HOH A 170 970 1312 HOH HOH . F 6 HOH A 171 971 1216 HOH HOH . F 6 HOH A 172 972 1196 HOH HOH . F 6 HOH A 173 973 1224 HOH HOH . F 6 HOH A 174 974 1245 HOH HOH . F 6 HOH A 175 975 1255 HOH HOH . F 6 HOH A 176 976 165 HOH HOH . F 6 HOH A 177 977 1209 HOH HOH . F 6 HOH A 178 978 14 HOH HOH . F 6 HOH A 179 979 1310 HOH HOH . F 6 HOH A 180 980 1293 HOH HOH . F 6 HOH A 181 981 1208 HOH HOH . F 6 HOH A 182 982 1274 HOH HOH . F 6 HOH A 183 983 1230 HOH HOH . F 6 HOH A 184 984 1247 HOH HOH . F 6 HOH A 185 985 130 HOH HOH . F 6 HOH A 186 986 37 HOH HOH . F 6 HOH A 187 987 174 HOH HOH . F 6 HOH A 188 988 1242 HOH HOH . F 6 HOH A 189 989 138 HOH HOH . F 6 HOH A 190 990 1206 HOH HOH . F 6 HOH A 191 991 1294 HOH HOH . F 6 HOH A 192 992 85 HOH HOH . F 6 HOH A 193 993 162 HOH HOH . F 6 HOH A 194 994 1264 HOH HOH . F 6 HOH A 195 995 171 HOH HOH . F 6 HOH A 196 996 159 HOH HOH . F 6 HOH A 197 997 150 HOH HOH . F 6 HOH A 198 998 9 HOH HOH . F 6 HOH A 199 999 1308 HOH HOH . F 6 HOH A 200 1000 78 HOH HOH . F 6 HOH A 201 1001 1272 HOH HOH . F 6 HOH A 202 1002 170 HOH HOH . F 6 HOH A 203 1003 93 HOH HOH . F 6 HOH A 204 1004 155 HOH HOH . F 6 HOH A 205 1005 88 HOH HOH . F 6 HOH A 206 1006 38 HOH HOH . F 6 HOH A 207 1007 143 HOH HOH . F 6 HOH A 208 1008 1292 HOH HOH . F 6 HOH A 209 1009 77 HOH HOH . F 6 HOH A 210 1010 1262 HOH HOH . F 6 HOH A 211 1011 1288 HOH HOH . F 6 HOH A 212 1012 47 HOH HOH . F 6 HOH A 213 1013 1258 HOH HOH . F 6 HOH A 214 1014 172 HOH HOH . F 6 HOH A 215 1015 154 HOH HOH . F 6 HOH A 216 1016 134 HOH HOH . F 6 HOH A 217 1017 11 HOH HOH . F 6 HOH A 218 1018 192 HOH HOH . F 6 HOH A 219 1019 16 HOH HOH . F 6 HOH A 220 1020 35 HOH HOH . F 6 HOH A 221 1021 63 HOH HOH . F 6 HOH A 222 1022 1128 HOH HOH . F 6 HOH A 223 1023 145 HOH HOH . F 6 HOH A 224 1024 189 HOH HOH . F 6 HOH A 225 1025 195 HOH HOH . F 6 HOH A 226 1026 1270 HOH HOH . F 6 HOH A 227 1027 1341 HOH HOH . F 6 HOH A 228 1028 1303 HOH HOH . F 6 HOH A 229 1029 1235 HOH HOH . F 6 HOH A 230 1030 1345 HOH HOH . F 6 HOH A 231 1031 117 HOH HOH . F 6 HOH A 232 1032 1307 HOH HOH . F 6 HOH A 233 1033 1322 HOH HOH . F 6 HOH A 234 1034 183 HOH HOH . F 6 HOH A 235 1035 101 HOH HOH . F 6 HOH A 236 1036 140 HOH HOH . F 6 HOH A 237 1037 190 HOH HOH . F 6 HOH A 238 1038 175 HOH HOH . F 6 HOH A 239 1039 153 HOH HOH . F 6 HOH A 240 1040 1323 HOH HOH . F 6 HOH A 241 1041 18 HOH HOH . F 6 HOH A 242 1042 82 HOH HOH . F 6 HOH A 243 1043 1335 HOH HOH . F 6 HOH A 244 1044 10 HOH HOH . F 6 HOH A 245 1045 71 HOH HOH . F 6 HOH A 246 1046 67 HOH HOH . F 6 HOH A 247 1047 124 HOH HOH . F 6 HOH A 248 1048 186 HOH HOH . F 6 HOH A 249 1049 197 HOH HOH . F 6 HOH A 250 1050 201 HOH HOH . F 6 HOH A 251 1051 1205 HOH HOH . F 6 HOH A 252 1052 1330 HOH HOH . F 6 HOH A 253 1053 108 HOH HOH . F 6 HOH A 254 1054 19 HOH HOH . F 6 HOH A 255 1055 1368 HOH HOH . F 6 HOH A 256 1056 1372 HOH HOH . F 6 HOH A 257 1057 1367 HOH HOH . F 6 HOH A 258 1058 1361 HOH HOH . F 6 HOH A 259 1059 1358 HOH HOH . F 6 HOH A 260 1060 1362 HOH HOH . F 6 HOH A 261 1061 200 HOH HOH . F 6 HOH A 262 1062 1357 HOH HOH . F 6 HOH A 263 1063 1169 HOH HOH . F 6 HOH A 264 1064 168 HOH HOH . F 6 HOH A 265 1065 1364 HOH HOH . F 6 HOH A 266 1066 1370 HOH HOH . F 6 HOH A 267 1067 1374 HOH HOH . F 6 HOH A 268 1068 1376 HOH HOH . F 6 HOH A 269 1069 194 HOH HOH . F 6 HOH A 270 1070 1379 HOH HOH . F 6 HOH A 271 1071 1375 HOH HOH . F 6 HOH A 272 1072 169 HOH HOH . G 6 HOH E 1 201 141 HOH HOH . G 6 HOH E 2 202 147 HOH HOH . G 6 HOH E 3 203 142 HOH HOH . G 6 HOH E 4 204 137 HOH HOH . G 6 HOH E 5 205 144 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -87.985 _atom_site.Cartn_y 88.167 _atom_site.Cartn_z 13.52 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 98.1 _atom_site.pdbx_formal_charge 1 _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 702 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 76 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #